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The map label for this gene is yqgF [C]

Identifier: 126696190

GI number: 126696190

Start: 739168

End: 739629

Strand: Reverse

Name: yqgF [C]

Synonym: P9301_08521

Alternate gene names: 126696190

Gene position: 739629-739168 (Counterclockwise)

Preceding gene: 126696191

Following gene: 126696189

Centisome position: 45.05

GC content: 30.95

Gene sequence:

>462_bases
GTGAAATTTTGCAAACCCAAGCCCAAATCAATTTTGAGTTTGGATATAGGTTCCAAAAGAATAGGATTAGCTTATTGTGA
TCCCCTCTGCATAACATCAAATATACTTCCAGCAGTAAAACGATTTGAAAATAATCAAGAGATTAAAATCATTAGAAATT
ATATAAATGAATTTAATTTGACTGGTTTTATTGTGGGTATTCCGCTAGATGAGAAAGGTAAAATGACCACTCAAGCTATT
GACTGTAAAAATTACGGTCAATTACTTTCAAATGAATTAAAGCTTCCATTTTCTTATGTCAACGAACATAGTTCAACTTG
GGAATCTTCAGAAAGATTTGGAATAAAAAAAGATAAATCCGGATTAATTGATAGTTTTTCAGCAAAAATAATACTTGAAC
AATGGATCGAAGAGGGTCCTGAATTAGAAGAAATAGCTGGTAAACGTCAGATAAAAGATTAG

Upstream 100 bases:

>100_bases
CCAAACAAGTAAATAAAATAAATCAATCTTTGGAATCAATCATTGAAAAATTAAGTCCACAAGGTAATCCATATCCATCT
CCTTTTCCATTAAAAACAAA

Downstream 100 bases:

>100_bases
TATTAAAAAGGATAGATAATTTTTAAATGAAAGAAGCCAATTCAAATGATAATTATGATGCACAGACTCTTTTATTAAAT
GACTCAAATGGAAACGAGCT

Product: endonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 153; Mature: 153

Protein sequence:

>153_residues
MKFCKPKPKSILSLDIGSKRIGLAYCDPLCITSNILPAVKRFENNQEIKIIRNYINEFNLTGFIVGIPLDEKGKMTTQAI
DCKNYGQLLSNELKLPFSYVNEHSSTWESSERFGIKKDKSGLIDSFSAKIILEQWIEEGPELEEIAGKRQIKD

Sequences:

>Translated_153_residues
MKFCKPKPKSILSLDIGSKRIGLAYCDPLCITSNILPAVKRFENNQEIKIIRNYINEFNLTGFIVGIPLDEKGKMTTQAI
DCKNYGQLLSNELKLPFSYVNEHSSTWESSERFGIKKDKSGLIDSFSAKIILEQWIEEGPELEEIAGKRQIKD
>Mature_153_residues
MKFCKPKPKSILSLDIGSKRIGLAYCDPLCITSNILPAVKRFENNQEIKIIRNYINEFNLTGFIVGIPLDEKGKMTTQAI
DCKNYGQLLSNELKLPFSYVNEHSSTWESSERFGIKKDKSGLIDSFSAKIILEQWIEEGPELEEIAGKRQIKD

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_PROM0 (A3PCK0)

Other databases:

- EMBL:   CP000576
- RefSeq:   YP_001091076.1
- ProteinModelPortal:   A3PCK0
- STRING:   A3PCK0
- GeneID:   4911185
- GenomeReviews:   CP000576_GR
- KEGG:   pmg:P9301_08521
- eggNOG:   COG0816
- HOGENOM:   HBG607919
- OMA:   NEHSSTW
- ProtClustDB:   CLSK919441
- BioCyc:   PMAR167546:P9301ORF_0868-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 17401; Mature: 17401

Theoretical pI: Translated: 7.91; Mature: 7.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFCKPKPKSILSLDIGSKRIGLAYCDPLCITSNILPAVKRFENNQEIKIIRNYINEFNL
CCCCCCCCCCEEEEECCCCEECCEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC
TGFIVGIPLDEKGKMTTQAIDCKNYGQLLSNELKLPFSYVNEHSSTWESSERFGIKKDKS
CEEEEECCCCCCCCCHHHHHCHHHHHHHHHHCCCCCHHHHHCCCCCCCCHHHCCCCCCCC
GLIDSFSAKIILEQWIEEGPELEEIAGKRQIKD
CCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCC
>Mature Secondary Structure
MKFCKPKPKSILSLDIGSKRIGLAYCDPLCITSNILPAVKRFENNQEIKIIRNYINEFNL
CCCCCCCCCCEEEEECCCCEECCEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC
TGFIVGIPLDEKGKMTTQAIDCKNYGQLLSNELKLPFSYVNEHSSTWESSERFGIKKDKS
CEEEEECCCCCCCCCHHHHHCHHHHHHHHHHCCCCCHHHHHCCCCCCCCHHHCCCCCCCC
GLIDSFSAKIILEQWIEEGPELEEIAGKRQIKD
CCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA