Definition | Clostridium difficile 630 chromosome, complete genome. |
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Accession | NC_009089 |
Length | 4,290,252 |
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The map label for this gene is 126698603
Identifier: 126698603
GI number: 126698603
Start: 1190228
End: 1190917
Strand: Direct
Name: 126698603
Synonym: CD1019
Alternate gene names: NA
Gene position: 1190228-1190917 (Clockwise)
Preceding gene: 126698602
Following gene: 126698604
Centisome position: 27.74
GC content: 25.65
Gene sequence:
>690_bases GTGAATAAAAAATTGAACTATAGATTTGAAATGAAGCACAAAATAACTGAAGCAGATGTGTTAGCTTTAAAATCAAGACT CTATCCAATAATGAAGAAAGATGAAAATGCATCTAAAGATGGAAAATATCTTATTAGGAGTTTATATTTTGATACTCCTG AAGATAAAGCACTTTTGGATAAATTAAATGGCGTTGCAATAAGAGAAAAGTTTAGGATAAGATTTTATAATAATGACTGC TCTTATATAAGGTTAGAGAAAAAAATCAAACATTACAACATGACATCAAAGCTATCAACTAATTTAACCAAAAAAGAAGT AATAAATATACTAAATAATGATATTGAATTTCTAAAAGAGTCGACAAATTGTTTATTAAGAGAATTTTATTTGAAATTAA AATGTGAAAGATTAGAGGCAAAAAGCATAGTTGATTACAATAGAGAAGCTTTTATTTATCCAGTTGGAAATGTAAGAGTT ACAATCGATAGTGATATTAAAACTTCTGTAAATTCGGTAGATTTATTTAATAAAGATTTGCCAACTATTTCGGTAATTGA TGAGAATATGACTGTATTGGAGGTTAAATATGATGAATTTATACCAGATTTTATAAAGGATTTAATTCAAATTAATAAGA CTACCTCTACAGCAGTTTCAAAGTATGCTTCAAGTAGATTATATATTTAA
Upstream 100 bases:
>100_bases ATGCACTTATTTTACGGAGATTTAACAAAGTAGTGTAAAGTATACTCTAAATATAAAATAAATCAAATAGAGTTAAATAA ATTGAGAGGTGATATAAATA
Downstream 100 bases:
>100_bases GAATAAAGGCTATGATTTATATAAAGATATACATAAATAAGGTTAAAAAACAAATAAGTTAAAAATAAATAAAATAAAAA ATAAATAAGTTAAAAATAGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 229; Mature: 229
Protein sequence:
>229_residues MNKKLNYRFEMKHKITEADVLALKSRLYPIMKKDENASKDGKYLIRSLYFDTPEDKALLDKLNGVAIREKFRIRFYNNDC SYIRLEKKIKHYNMTSKLSTNLTKKEVINILNNDIEFLKESTNCLLREFYLKLKCERLEAKSIVDYNREAFIYPVGNVRV TIDSDIKTSVNSVDLFNKDLPTISVIDENMTVLEVKYDEFIPDFIKDLIQINKTTSTAVSKYASSRLYI
Sequences:
>Translated_229_residues MNKKLNYRFEMKHKITEADVLALKSRLYPIMKKDENASKDGKYLIRSLYFDTPEDKALLDKLNGVAIREKFRIRFYNNDC SYIRLEKKIKHYNMTSKLSTNLTKKEVINILNNDIEFLKESTNCLLREFYLKLKCERLEAKSIVDYNREAFIYPVGNVRV TIDSDIKTSVNSVDLFNKDLPTISVIDENMTVLEVKYDEFIPDFIKDLIQINKTTSTAVSKYASSRLYI >Mature_229_residues MNKKLNYRFEMKHKITEADVLALKSRLYPIMKKDENASKDGKYLIRSLYFDTPEDKALLDKLNGVAIREKFRIRFYNNDC SYIRLEKKIKHYNMTSKLSTNLTKKEVINILNNDIEFLKESTNCLLREFYLKLKCERLEAKSIVDYNREAFIYPVGNVRV TIDSDIKTSVNSVDLFNKDLPTISVIDENMTVLEVKYDEFIPDFIKDLIQINKTTSTAVSKYASSRLYI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26903; Mature: 26903
Theoretical pI: Translated: 9.43; Mature: 9.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKKLNYRFEMKHKITEADVLALKSRLYPIMKKDENASKDGKYLIRSLYFDTPEDKALLD CCCCCCEEEEECHHCCHHHHHHHHHHHCHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHHH KLNGVAIREKFRIRFYNNDCSYIRLEKKIKHYNMTSKLSTNLTKKEVINILNNDIEFLKE HHCCEEEEEEEEEEEECCCCCEEEEEHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHH STNCLLREFYLKLKCERLEAKSIVDYNREAFIYPVGNVRVTIDSDIKTSVNSVDLFNKDL HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEECCCCCCCCCHHHHHCCCC PTISVIDENMTVLEVKYDEFIPDFIKDLIQINKTTSTAVSKYASSRLYI CEEEEECCCEEEEEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCC >Mature Secondary Structure MNKKLNYRFEMKHKITEADVLALKSRLYPIMKKDENASKDGKYLIRSLYFDTPEDKALLD CCCCCCEEEEECHHCCHHHHHHHHHHHCHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHHH KLNGVAIREKFRIRFYNNDCSYIRLEKKIKHYNMTSKLSTNLTKKEVINILNNDIEFLKE HHCCEEEEEEEEEEEECCCCCEEEEEHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHH STNCLLREFYLKLKCERLEAKSIVDYNREAFIYPVGNVRVTIDSDIKTSVNSVDLFNKDL HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEECCCCCCCCCHHHHHCCCC PTISVIDENMTVLEVKYDEFIPDFIKDLIQINKTTSTAVSKYASSRLYI CEEEEECCCEEEEEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA