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The map label for this gene is yciR [C]

Identifier: 126698599

GI number: 126698599

Start: 1183390

End: 1185003

Strand: Direct

Name: yciR [C]

Synonym: CD1015

Alternate gene names: 126698599

Gene position: 1183390-1185003 (Clockwise)

Preceding gene: 126698598

Following gene: 126698601

Centisome position: 27.58

GC content: 25.34

Gene sequence:

>1614_bases
ATGAAAGAACAGCTGATTTTTAATATTACAAATTTAGTAACGGTTGTATTTGAAGCTTTTGTCATCCATATGTTTTTATC
AGACTTTTTAGGCCAGAAAGAAGGGTATATAAAAGTTGTAAGATATGCTAAACTGGGTTTTATAATATGTTTAGGATTCT
GTAATTTAATAACTTTAAACCCTAAAATCACAATGCCTTTAATTTTCATCCTTATTTTTTCAACATCATTTTTATATAAA
GGAAATTTAAAGACACGATTGTTTACTACTGTTTTATTAAGTATATTCTTTATACTGTCAGAAATTGTAGTTACAAGTAT
TTTTGTTTTATTTGTAAAAGAAGGCTTTGAAATAATGCTTGAAAATAATAGTATAAGAGTATTGGCGACAATTTTATCTA
AAATTGTCTTTTTGTTGACTTGTAAAATTATTTGTCTATTTAAAAAAGATGTACATTTAGATATGCCCATAAAGTATTGG
CTCCCTTTATTTTTAATACCTATATTTAGTTTATTTCTGTCTGTTTCTATCTTTGATGTAAGTAAATTTTTTAGTCTTGA
AAGTTTAAAATTTCTAAGCTTAATATCTAGTGTTGGTATTTTATATATTAATTTTATTGTCTTTTATTTATTTAAATTTA
TTATAGATAAAACTAAACTATCTATGAAATATGAACTACTTGAAAAAGAAATAATTCATAAGGAAGAATTAAGACTTAGT
AATGAGTGTTATAAAATTATTGTTGAACAGACTGATTCTGTCGTTTTCGAATGGAATATCAAAGAAAATAAATCATTTGT
ATCGCAGGCTTGGACTGAAAAATTTGGATATAACAATGCATGTAAGAATATTTTTAAAGAAATTAAAGATAAAGACTTAG
TTCATTCTGAAGATAAAGCTATATTTGAAGGTTTTCTTGAAAGTATTAAAAAAAAGAATATGCACAATCAAGCAGTATAT
CGTTTAAAAAAATCTAATGGTGAATATATTTGGTGTAGAACATCAATTACAAGTATTTATAATGATGAAAATGAACTTTT
AAGAGTTGTCGGAGTAATTGTAGATGTAGATAGTGATATAAAAAAATATGAAGAGTTAAGAACTAGAGCAGAAAGTGACT
CATTGACCAATATATACAATAAAGGTACATTTGAAAAATTAGTGGAAGAAACTATAGTTATGAATACAGGTGATAAAAAA
GATGCATTATTCATTATTGATTTGGATGATTTTAAAGAAATAAATGATAATTTTGGTCATCCATTTGGTGATTTTGTACT
AAAAACATTTGCTGATAAGATACAAACTAGTTTTGGTAGTAAAGACTTAGTCGGAAGAATTGGTGGAGATGAATTTGTTG
TATATATGCAAGATTATGTTACAGAAGTAAATTTGCATAAAAAAGCTAAAGAATTAAATAGAGTACTTTCGGATAATTAC
ACTGATTTGAGTTTTAGTTTTGATGCTTCTGTCAGTATAGGTATTGCAAGGTATCCTCAAGATGGAACTTCATTTTTTGA
ATTGTTTAAAAATGCAGATAGAGCACTTTATAGCATAAAAGCATCAGGTAAAAATTCATATTGTTTATTTGAAGAAGAAC
TATATGTACAGTGA

Upstream 100 bases:

>100_bases
TGACATTTAAAGTAAATGCTTAAATATAGATACGAAAGGAAAAGTAAAATCTGAAGTGTATTTAGGTTTAAGTAAGCTTC
TTATTTTATAAAAAATATGT

Downstream 100 bases:

>100_bases
ATTTGAATTTAGATTTTATGTGAGAGTAAGATTTATATATACTTGTGGCTGTCTGATTTATAAAATATGTTACTTTGTAT
ATTTTTATATGTTTCAGTAA

Product: signaling protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 537; Mature: 537

Protein sequence:

>537_residues
MKEQLIFNITNLVTVVFEAFVIHMFLSDFLGQKEGYIKVVRYAKLGFIICLGFCNLITLNPKITMPLIFILIFSTSFLYK
GNLKTRLFTTVLLSIFFILSEIVVTSIFVLFVKEGFEIMLENNSIRVLATILSKIVFLLTCKIICLFKKDVHLDMPIKYW
LPLFLIPIFSLFLSVSIFDVSKFFSLESLKFLSLISSVGILYINFIVFYLFKFIIDKTKLSMKYELLEKEIIHKEELRLS
NECYKIIVEQTDSVVFEWNIKENKSFVSQAWTEKFGYNNACKNIFKEIKDKDLVHSEDKAIFEGFLESIKKKNMHNQAVY
RLKKSNGEYIWCRTSITSIYNDENELLRVVGVIVDVDSDIKKYEELRTRAESDSLTNIYNKGTFEKLVEETIVMNTGDKK
DALFIIDLDDFKEINDNFGHPFGDFVLKTFADKIQTSFGSKDLVGRIGGDEFVVYMQDYVTEVNLHKKAKELNRVLSDNY
TDLSFSFDASVSIGIARYPQDGTSFFELFKNADRALYSIKASGKNSYCLFEEELYVQ

Sequences:

>Translated_537_residues
MKEQLIFNITNLVTVVFEAFVIHMFLSDFLGQKEGYIKVVRYAKLGFIICLGFCNLITLNPKITMPLIFILIFSTSFLYK
GNLKTRLFTTVLLSIFFILSEIVVTSIFVLFVKEGFEIMLENNSIRVLATILSKIVFLLTCKIICLFKKDVHLDMPIKYW
LPLFLIPIFSLFLSVSIFDVSKFFSLESLKFLSLISSVGILYINFIVFYLFKFIIDKTKLSMKYELLEKEIIHKEELRLS
NECYKIIVEQTDSVVFEWNIKENKSFVSQAWTEKFGYNNACKNIFKEIKDKDLVHSEDKAIFEGFLESIKKKNMHNQAVY
RLKKSNGEYIWCRTSITSIYNDENELLRVVGVIVDVDSDIKKYEELRTRAESDSLTNIYNKGTFEKLVEETIVMNTGDKK
DALFIIDLDDFKEINDNFGHPFGDFVLKTFADKIQTSFGSKDLVGRIGGDEFVVYMQDYVTEVNLHKKAKELNRVLSDNY
TDLSFSFDASVSIGIARYPQDGTSFFELFKNADRALYSIKASGKNSYCLFEEELYVQ
>Mature_537_residues
MKEQLIFNITNLVTVVFEAFVIHMFLSDFLGQKEGYIKVVRYAKLGFIICLGFCNLITLNPKITMPLIFILIFSTSFLYK
GNLKTRLFTTVLLSIFFILSEIVVTSIFVLFVKEGFEIMLENNSIRVLATILSKIVFLLTCKIICLFKKDVHLDMPIKYW
LPLFLIPIFSLFLSVSIFDVSKFFSLESLKFLSLISSVGILYINFIVFYLFKFIIDKTKLSMKYELLEKEIIHKEELRLS
NECYKIIVEQTDSVVFEWNIKENKSFVSQAWTEKFGYNNACKNIFKEIKDKDLVHSEDKAIFEGFLESIKKKNMHNQAVY
RLKKSNGEYIWCRTSITSIYNDENELLRVVGVIVDVDSDIKKYEELRTRAESDSLTNIYNKGTFEKLVEETIVMNTGDKK
DALFIIDLDDFKEINDNFGHPFGDFVLKTFADKIQTSFGSKDLVGRIGGDEFVVYMQDYVTEVNLHKKAKELNRVLSDNY
TDLSFSFDASVSIGIARYPQDGTSFFELFKNADRALYSIKASGKNSYCLFEEELYVQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=188, Percent_Identity=29.7872340425532, Blast_Score=96, Evalue=8e-21,
Organism=Escherichia coli, GI1787262, Length=161, Percent_Identity=34.7826086956522, Blast_Score=94, Evalue=3e-20,
Organism=Escherichia coli, GI1788381, Length=216, Percent_Identity=29.6296296296296, Blast_Score=91, Evalue=3e-19,
Organism=Escherichia coli, GI1786584, Length=166, Percent_Identity=30.1204819277108, Blast_Score=89, Evalue=9e-19,
Organism=Escherichia coli, GI87082007, Length=167, Percent_Identity=34.7305389221557, Blast_Score=86, Evalue=6e-18,
Organism=Escherichia coli, GI87081881, Length=210, Percent_Identity=29.5238095238095, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1787802, Length=168, Percent_Identity=33.3333333333333, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI145693134, Length=169, Percent_Identity=31.3609467455621, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI87081974, Length=165, Percent_Identity=26.6666666666667, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1787816, Length=136, Percent_Identity=31.6176470588235, Blast_Score=64, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 62282; Mature: 62282

Theoretical pI: Translated: 6.22; Mature: 6.22

Prosite motif: PS50113 PAC ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCEEEEECCCEEEEEEECCCCCHHHHHHHHCCCHHEEEEEECCCCCEEEEEHHHCCC
>Mature Secondary Structure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CCEEEEECCCEEEEEEECCCCCHHHHHHHHCCCHHEEEEEECCCCCEEEEEHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]