Definition | Clostridium difficile 630 chromosome, complete genome. |
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Accession | NC_009089 |
Length | 4,290,252 |
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The map label for this gene is 126698583
Identifier: 126698583
GI number: 126698583
Start: 1168922
End: 1169917
Strand: Direct
Name: 126698583
Synonym: CD0999
Alternate gene names: NA
Gene position: 1168922-1169917 (Clockwise)
Preceding gene: 126698582
Following gene: 126698584
Centisome position: 27.25
GC content: 30.52
Gene sequence:
>996_bases ATGAAAAAGTATATTTCTATAATATTATTAGTGGTGTTGACTATGGTTGTTTTGGTAGGATGTTCACCAGGAAAAGATAA CCCTAAAAATAAGGAGCTATCAGTTGTCAAACAAGTAAAAGTAGCTGTTCCAGATGGACTACCAGCAGTGGCAATAGCTA AACTTGCAAATGAAAATCCAGAGATTAAAGAAGGATATGAAACAGTGTATAGCATTGAAAAGACACCTGAGGCGATTTCC ACTAGAGTGATGAAAAAAGATGCAGATATAGCTATAGTTCCTTCAAACATGGCTGCAATAGCGTATAATAAAACTTCATC ATATAATATTGTTGGAACTGTAGGAATGGGTTCACTTTATTTGGTGTCAACAGAAAATATAAAAGATTACTCTGATTTAG TTGGTAAAGAAGTTGGATGTACTGGAAAAGGACTTACTCCAGACATAACTATAAAAAGTCTTTTGTTACAAAAGGATATA AATTATTCAGATATAAAATTTAATTATGTAAGTTCAGCAAGTGAACTGGTACCATTATTGGCTACTGGTAAAGTTAAAAC AGGTATTGTTCCAGAACCTGCACTTAGTGCTTTGATGTCTAAAAATCCAGACATAAAAATTATAAAAAGTTTAAATGACT CATGGAAGGAAGTAAGTGGTTCAAAAGACGGTTATCCTCAATCTACTTTAATTGTAAAGTCTGAATTTTTAAGAGATAAT AAAGATTTTGTTGATTCTTTTGTAGGTCAATTATCAAATAGTATAGATTGGGCAAACAAAAATCCTGAAGAATTAGGTGC ATATTCTGAAAAAATAAAAATATCTACTGAATCAAAGATAATAGGAAAATCTCTTGAAAGAGCTAATTTGAAATATATTC CAGTTAAGGACATGATTAAAGATTATAAAAATTACTATGAGAAATTAGCTAATTTTGATGATAAGACATTAGGAGGCAAA GTACCAGATGAAGCAATATACTTTGTTGAGAAATAA
Upstream 100 bases:
>100_bases AAATAAAAATACTTAAAAAAGAAGGATTATTCGATAAATTAACAGAAATTAGTATAAATAAATATAATTATTTTAATGAC GTTACCTTTGGGAGGAAGAG
Downstream 100 bases:
>100_bases AAAAAATAAAGAACAATTTATAGATAAAATGGAGGTAACACTTTCTTGTGTTATCCTCTTATTTTTATGGCAAATTATTG CTTTAAAAATTGATAATGAT
Product: ABC transporter substrate-binding protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 331; Mature: 331
Protein sequence:
>331_residues MKKYISIILLVVLTMVVLVGCSPGKDNPKNKELSVVKQVKVAVPDGLPAVAIAKLANENPEIKEGYETVYSIEKTPEAIS TRVMKKDADIAIVPSNMAAIAYNKTSSYNIVGTVGMGSLYLVSTENIKDYSDLVGKEVGCTGKGLTPDITIKSLLLQKDI NYSDIKFNYVSSASELVPLLATGKVKTGIVPEPALSALMSKNPDIKIIKSLNDSWKEVSGSKDGYPQSTLIVKSEFLRDN KDFVDSFVGQLSNSIDWANKNPEELGAYSEKIKISTESKIIGKSLERANLKYIPVKDMIKDYKNYYEKLANFDDKTLGGK VPDEAIYFVEK
Sequences:
>Translated_331_residues MKKYISIILLVVLTMVVLVGCSPGKDNPKNKELSVVKQVKVAVPDGLPAVAIAKLANENPEIKEGYETVYSIEKTPEAIS TRVMKKDADIAIVPSNMAAIAYNKTSSYNIVGTVGMGSLYLVSTENIKDYSDLVGKEVGCTGKGLTPDITIKSLLLQKDI NYSDIKFNYVSSASELVPLLATGKVKTGIVPEPALSALMSKNPDIKIIKSLNDSWKEVSGSKDGYPQSTLIVKSEFLRDN KDFVDSFVGQLSNSIDWANKNPEELGAYSEKIKISTESKIIGKSLERANLKYIPVKDMIKDYKNYYEKLANFDDKTLGGK VPDEAIYFVEK >Mature_331_residues MKKYISIILLVVLTMVVLVGCSPGKDNPKNKELSVVKQVKVAVPDGLPAVAIAKLANENPEIKEGYETVYSIEKTPEAIS TRVMKKDADIAIVPSNMAAIAYNKTSSYNIVGTVGMGSLYLVSTENIKDYSDLVGKEVGCTGKGLTPDITIKSLLLQKDI NYSDIKFNYVSSASELVPLLATGKVKTGIVPEPALSALMSKNPDIKIIKSLNDSWKEVSGSKDGYPQSTLIVKSEFLRDN KDFVDSFVGQLSNSIDWANKNPEELGAYSEKIKISTESKIIGKSLERANLKYIPVKDMIKDYKNYYEKLANFDDKTLGGK VPDEAIYFVEK
Specific function: Unknown
COG id: COG0715
COG function: function code P; ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36298; Mature: 36298
Theoretical pI: Translated: 8.49; Mature: 8.49
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKYISIILLVVLTMVVLVGCSPGKDNPKNKELSVVKQVKVAVPDGLPAVAIAKLANENP CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCC EIKEGYETVYSIEKTPEAISTRVMKKDADIAIVPSNMAAIAYNKTSSYNIVGTVGMGSLY CHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEECCCCEEEEEECCCCCEEEEEECCCEEE LVSTENIKDYSDLVGKEVGCTGKGLTPDITIKSLLLQKDINYSDIKFNYVSSASELVPLL EEECCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHH ATGKVKTGIVPEPALSALMSKNPDIKIIKSLNDSWKEVSGSKDGYPQSTLIVKSEFLRDN CCCCCCCCCCCCHHHHHHHHCCCCEEEEHHCCHHHHHHCCCCCCCCCCEEEEEHHHHCCC KDFVDSFVGQLSNSIDWANKNPEELGAYSEKIKISTESKIIGKSLERANLKYIPVKDMIK HHHHHHHHHHHHCCCCCCCCCHHHHCCHHHEEEECCHHHHHHHHHHHCCCEEECHHHHHH DYKNYYEKLANFDDKTLGGKVPDEAIYFVEK HHHHHHHHHCCCCCCCCCCCCCCHHEEEEEC >Mature Secondary Structure MKKYISIILLVVLTMVVLVGCSPGKDNPKNKELSVVKQVKVAVPDGLPAVAIAKLANENP CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCC EIKEGYETVYSIEKTPEAISTRVMKKDADIAIVPSNMAAIAYNKTSSYNIVGTVGMGSLY CHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEECCCCEEEEEECCCCCEEEEEECCCEEE LVSTENIKDYSDLVGKEVGCTGKGLTPDITIKSLLLQKDINYSDIKFNYVSSASELVPLL EEECCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHH ATGKVKTGIVPEPALSALMSKNPDIKIIKSLNDSWKEVSGSKDGYPQSTLIVKSEFLRDN CCCCCCCCCCCCHHHHHHHHCCCCEEEEHHCCHHHHHHCCCCCCCCCCEEEEEHHHHCCC KDFVDSFVGQLSNSIDWANKNPEELGAYSEKIKISTESKIIGKSLERANLKYIPVKDMIK HHHHHHHHHHHHCCCCCCCCCHHHHCCHHHEEEECCHHHHHHHHHHHCCCEEECHHHHHH DYKNYYEKLANFDDKTLGGKVPDEAIYFVEK HHHHHHHHHCCCCCCCCCCCCCCHHEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA