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The map label for this gene is 126698556

Identifier: 126698556

GI number: 126698556

Start: 1138135

End: 1138950

Strand: Direct

Name: 126698556

Synonym: CD0972

Alternate gene names: NA

Gene position: 1138135-1138950 (Clockwise)

Preceding gene: 126698555

Following gene: 126698557

Centisome position: 26.53

GC content: 29.53

Gene sequence:

>816_bases
ATGAAAATAGGTATAAATTGTGGACATACAAAAACAGGAGCAGGAAGTGGAGCTATAGGTAAAATAAATGAGTCAATAGA
AACTAGGAATGTAGGATATAAAGTAATTGATAAATTAAAAAAATTAGGCAATAATGTAGTCGATTGTACTATAGATAAAG
CGTCTACTCAATCAGAATGTTTATCTAAGATAACAGCACAAGCTAATAGACAAGATTTAGATTGGTTCATATCAATACAT
TTCAATGCAGGTGGTGGCAAAGGATGCGAAGTTTACACATATAAAGGTAAGCAGTATCAAGATGCTATAGATGTTTGTAA
AAAAATTTCTGATTTAGGATTTACAAATCGAGGGGTAAAAGATGGAAGTGGATTATATGTAGTAAAGAAAACAAAAGCTA
AAAGTATGCTAATAGAAGTATGTTTTGTAGACACCGAAGATGCAAATAAGTATTTGAGTTTAGGAGCTGATAAATTAGCT
ACTGCAATAGTAGAAGCTATAACTAAACATATAAGTTCAGCAGAAGAAAACAATTATAATAGATATAAACATACTATAGT
CTATTCTGGAGATGATAAAGTATCAGCAGACATTTTAGGACTATATTATAAGAGAAAAAAAGAAAGTTACTTAGTAACAG
ATATAAAAGACTATAAACCACATAGAACACAAAATCTATATGTAATCGGTGGAGTAACTTGTAATAAAATGAAGGAAATG
AGTAAGACTACAGGAGAAAAATTTACTCAGCTATATGGTAATGATGTATGGTCAACAATGGATAAAGCTATAGAATTTGT
AAAAGAAAAATTGTAG

Upstream 100 bases:

>100_bases
TAGGATTAAATCCTAGTGCAGTCTTGCAAGGTGTAATTTGTTGGGGTATATCAATAGGTATAAATCAAACTTACAAACAG
TTGAAGGAGGAAAATAAACA

Downstream 100 bases:

>100_bases
AGTTAAAGGTGATAATATGTTAATACAAGAGAAAAGTTTTTATCCAAATAATATTTACCCCAAAATAGACTTTCTCAAAA
TAAAAAGGCAGTTAAAATCA

Product: phage endolysin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 271

Protein sequence:

>271_residues
MKIGINCGHTKTGAGSGAIGKINESIETRNVGYKVIDKLKKLGNNVVDCTIDKASTQSECLSKITAQANRQDLDWFISIH
FNAGGGKGCEVYTYKGKQYQDAIDVCKKISDLGFTNRGVKDGSGLYVVKKTKAKSMLIEVCFVDTEDANKYLSLGADKLA
TAIVEAITKHISSAEENNYNRYKHTIVYSGDDKVSADILGLYYKRKKESYLVTDIKDYKPHRTQNLYVIGGVTCNKMKEM
SKTTGEKFTQLYGNDVWSTMDKAIEFVKEKL

Sequences:

>Translated_271_residues
MKIGINCGHTKTGAGSGAIGKINESIETRNVGYKVIDKLKKLGNNVVDCTIDKASTQSECLSKITAQANRQDLDWFISIH
FNAGGGKGCEVYTYKGKQYQDAIDVCKKISDLGFTNRGVKDGSGLYVVKKTKAKSMLIEVCFVDTEDANKYLSLGADKLA
TAIVEAITKHISSAEENNYNRYKHTIVYSGDDKVSADILGLYYKRKKESYLVTDIKDYKPHRTQNLYVIGGVTCNKMKEM
SKTTGEKFTQLYGNDVWSTMDKAIEFVKEKL
>Mature_271_residues
MKIGINCGHTKTGAGSGAIGKINESIETRNVGYKVIDKLKKLGNNVVDCTIDKASTQSECLSKITAQANRQDLDWFISIH
FNAGGGKGCEVYTYKGKQYQDAIDVCKKISDLGFTNRGVKDGSGLYVVKKTKAKSMLIEVCFVDTEDANKYLSLGADKLA
TAIVEAITKHISSAEENNYNRYKHTIVYSGDDKVSADILGLYYKRKKESYLVTDIKDYKPHRTQNLYVIGGVTCNKMKEM
SKTTGEKFTQLYGNDVWSTMDKAIEFVKEKL

Specific function: Unknown

COG id: COG0860

COG function: function code M; N-acetylmuramoyl-L-alanine amidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To C.perfringens pIP404 ORF10 [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002508 [H]

Pfam domain/function: PF01520 Amidase_3 [H]

EC number: 3.5.1.28

Molecular weight: Translated: 30116; Mature: 30116

Theoretical pI: Translated: 9.18; Mature: 9.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIGINCGHTKTGAGSGAIGKINESIETRNVGYKVIDKLKKLGNNVVDCTIDKASTQSEC
CEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHCCCEEEEEECCCCCHHHH
LSKITAQANRQDLDWFISIHFNAGGGKGCEVYTYKGKQYQDAIDVCKKISDLGFTNRGVK
HHHHHHHCCCCCCEEEEEEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCC
DGSGLYVVKKTKAKSMLIEVCFVDTEDANKYLSLGADKLATAIVEAITKHISSAEENNYN
CCCCEEEEEECCHHEEEEEEEEECCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCC
RYKHTIVYSGDDKVSADILGLYYKRKKESYLVTDIKDYKPHRTQNLYVIGGVTCNKMKEM
EEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEECHHHCCCCCCCEEEEEECCCHHHHHHH
SKTTGEKFTQLYGNDVWSTMDKAIEFVKEKL
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKIGINCGHTKTGAGSGAIGKINESIETRNVGYKVIDKLKKLGNNVVDCTIDKASTQSEC
CEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHCCCEEEEEECCCCCHHHH
LSKITAQANRQDLDWFISIHFNAGGGKGCEVYTYKGKQYQDAIDVCKKISDLGFTNRGVK
HHHHHHHCCCCCCEEEEEEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCC
DGSGLYVVKKTKAKSMLIEVCFVDTEDANKYLSLGADKLATAIVEAITKHISSAEENNYN
CCCCEEEEEECCHHEEEEEEEEECCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCC
RYKHTIVYSGDDKVSADILGLYYKRKKESYLVTDIKDYKPHRTQNLYVIGGVTCNKMKEM
EEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEECHHHCCCCCCCEEEEEECCCHHHHHHH
SKTTGEKFTQLYGNDVWSTMDKAIEFVKEKL
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8052128; 11792842 [H]