Definition | Clostridium difficile 630 chromosome, complete genome. |
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Accession | NC_009089 |
Length | 4,290,252 |
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The map label for this gene is 126698549
Identifier: 126698549
GI number: 126698549
Start: 1133954
End: 1134571
Strand: Direct
Name: 126698549
Synonym: CD0965
Alternate gene names: NA
Gene position: 1133954-1134571 (Clockwise)
Preceding gene: 126698548
Following gene: 126698550
Centisome position: 26.43
GC content: 28.16
Gene sequence:
>618_bases TTGGATAAAGAGATTAATCTAATAAATTACTTACCACAAATTCTACAAGATAAAGAAGAATATATAAAAGTATTTAATGT AGAAAACAAAGAAATAAAAACACTACATGAAAAATTAAATGACCTATCAAGTGACCAGTTTTTAGAGGATTTAACTCCAA GTGGTATAAAAAGATGGGAAAAGATAATGTCTATAACTCCTAAAAGTAATGAGAGTTTAGAAGATAGAAGGTTTAGGATT TTTAGTAAATATATAAGTAAACTACCTTACTCAGAGAGATTTTTAAGGAACTGGCTAGATAGTATAGTTGGAGAAGGCAA TTATGAATTAACTATTAATAATGCTACTTATAATATACATCTTGAAAGTGATGCTAGAAATCAAGATTGGTTTGAGGAAG TTCATTCTTTTGTAAGTAATATTAAGCCATGTAATATGACTTTAGATTACACTAGAGTGCTTATAAGCAAAGACAATTAT ATGAATTTTGGTATAACAACCTTAATGGGTCAAGAAATAACTATATACCCTTGGAGTCCACCAGATATAGAAACTTATGG AGAAATTGATGTATTAACTGGCAATGGAGTTGGATACCAAGAGATAACAATATTTTAG
Upstream 100 bases:
>100_bases AGTATTGATGGAGTGTTAGATATTACAAACACAATGATAAATGATGTTAAATCTAATCTAACAATAGATAGTAACAGTAT AGTAGTGAGAGGTGAGGTAG
Downstream 100 bases:
>100_bases GAGGTGATATATTGGCTATAGATAAAAGTTATTACACTATAATTACAGATGTAGGAAAAGCAAAGATAGCAAATGCAAGT GTCACAGGTAATAAAGTGGG
Product: phage protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 205; Mature: 205
Protein sequence:
>205_residues MDKEINLINYLPQILQDKEEYIKVFNVENKEIKTLHEKLNDLSSDQFLEDLTPSGIKRWEKIMSITPKSNESLEDRRFRI FSKYISKLPYSERFLRNWLDSIVGEGNYELTINNATYNIHLESDARNQDWFEEVHSFVSNIKPCNMTLDYTRVLISKDNY MNFGITTLMGQEITIYPWSPPDIETYGEIDVLTGNGVGYQEITIF
Sequences:
>Translated_205_residues MDKEINLINYLPQILQDKEEYIKVFNVENKEIKTLHEKLNDLSSDQFLEDLTPSGIKRWEKIMSITPKSNESLEDRRFRI FSKYISKLPYSERFLRNWLDSIVGEGNYELTINNATYNIHLESDARNQDWFEEVHSFVSNIKPCNMTLDYTRVLISKDNY MNFGITTLMGQEITIYPWSPPDIETYGEIDVLTGNGVGYQEITIF >Mature_205_residues MDKEINLINYLPQILQDKEEYIKVFNVENKEIKTLHEKLNDLSSDQFLEDLTPSGIKRWEKIMSITPKSNESLEDRRFRI FSKYISKLPYSERFLRNWLDSIVGEGNYELTINNATYNIHLESDARNQDWFEEVHSFVSNIKPCNMTLDYTRVLISKDNY MNFGITTLMGQEITIYPWSPPDIETYGEIDVLTGNGVGYQEITIF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24129; Mature: 24129
Theoretical pI: Translated: 4.46; Mature: 4.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDKEINLINYLPQILQDKEEYIKVFNVENKEIKTLHEKLNDLSSDQFLEDLTPSGIKRWE CCCCCHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHH KIMSITPKSNESLEDRRFRIFSKYISKLPYSERFLRNWLDSIVGEGNYELTINNATYNIH HHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEECEEEEEE LESDARNQDWFEEVHSFVSNIKPCNMTLDYTRVLISKDNYMNFGITTLMGQEITIYPWSP ECCCCCCHHHHHHHHHHHHCCCCCCEEHHHEEEEEECCCCCCCCHHHHCCCEEEEECCCC PDIETYGEIDVLTGNGVGYQEITIF CCCCCCCCEEEEECCCCCCEEEEEC >Mature Secondary Structure MDKEINLINYLPQILQDKEEYIKVFNVENKEIKTLHEKLNDLSSDQFLEDLTPSGIKRWE CCCCCHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHH KIMSITPKSNESLEDRRFRIFSKYISKLPYSERFLRNWLDSIVGEGNYELTINNATYNIH HHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEECEEEEEE LESDARNQDWFEEVHSFVSNIKPCNMTLDYTRVLISKDNYMNFGITTLMGQEITIYPWSP ECCCCCCHHHHHHHHHHHHCCCCCCEEHHHEEEEEECCCCCCCCHHHHCCCEEEEECCCC PDIETYGEIDVLTGNGVGYQEITIF CCCCCCCCEEEEECCCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA