Definition | Burkholderia mallei NCTC 10247 chromosome II, complete genome. |
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Accession | NC_009079 |
Length | 2,352,693 |
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The map label for this gene is ydcR [H]
Identifier: 126447925
GI number: 126447925
Start: 1013783
End: 1015201
Strand: Direct
Name: ydcR [H]
Synonym: BMA10247_A1073
Alternate gene names: 126447925
Gene position: 1013783-1015201 (Clockwise)
Preceding gene: 126447038
Following gene: 126447756
Centisome position: 43.09
GC content: 69.7
Gene sequence:
>1419_bases GTGAAGCGCTACGAACAACTGGCGGACGACATCGAGGCGATGATCCGGCGCGGCGTCTACCGGCCGGGCGAGCGGATACC GTCGGTGCGGCAGGCGAGCGTGCAGCACCGGCTCAGCATCACGACCGTCGTGCGCGCGTACCTGGTGCTCGAGAGCCGCG GCGCGATCGAGAGCCGGCCGCAGTCCGGCTATTTCGTGCGCGCGCGGCAGGATGCGCCGGCGCTCGCGCTGCATGCGTCG GCGCCCGTCGCGGTGTCGTCGGCCGTCGACGTGAGCCGGCTCGTGCTGTCGACGCTGCGCTCGATCGCGCGCGACGACGC GGTGCCGCTCGGCTCGCCGTATCCGGACGCGACGCCGTTCCCCGCGCAGCGCATCGCGCGGCACGCGCACGCTATCGCGC GGCGGCGCGCGCGCTGGGGCGTGATCGACGATCTGCCGCCGGGCAATCCGGAGCTGATCCGGCAGATCGCGCGCCGCTAT CTGGAAGGCGGCGTCGCGGTCGATCCGGGCGAGATCGTCGTGACGATCGGCGCGACCGAGGCGATCAATTTGTGCCTGCA GGCGGTGGCCAAGCCGGGCGACACGATCGCCGTCGAATCGCCGACGTTCTACGCGATGCTGCACGCGATCGAGCGGCTCG GGATGCGTGCGATCGAAGTCGCGACGCACCCGGGCGAGGGCATCGATATCGACGCGCTCGCGCGGATTCTCGCGACCGAG CGCATTGCCGCGTGCATGGTGATGCCCAATTTCCAGAACCCGCTCGGCTTCCTGATGCCGGACGAGCGCAAGCGCGCGCT CGTCGAGCTGCTCGCGCGGCACGACGTGCCGGCGATCGAGAACGACGTCTACCACGAGCTGTACTACGGCGCCGCGCGGC CGAGCACGCTCAAGGCGTTCGATGCGCGCGGGCTCGTGCTGCACTGCGCGTCGTTCTCGAAAAGCCTGTCGCCCGCGTAC CGGGTCGGCTGGGCGATGCCGGGGCGTTACCGCGATCAGGTCGAAAAGCTCAAGTTCCTGAACACCCTCGCGACGCCCGC GATCGACCAGCTCGCGATCGCCGAGTATCTGCGGCACGACGGCTACGATCACCATCTGCGGCGGATTCGCAAGCTCTATG CGCAGCAGGCGAGCATGATGGCGGCGCTCGTGCGGCGTTTCTTTCCGGACGGCACGCGGCTGTCGCAGCCGAAGGGCGGC TACGTGCTATGGATCGAGCTGCCGGACGGCGTCGACGCGATGGCGCTCTACCGGCTCGCGCTCGCGCAGAAGATCACGCT CGGGCCGGGGCACATGTTCTCGACGACGCTCGCGTATCGGCACTGCATCCGGCTGAACTACAGCTATGCGTGGTCGCCGC AGATCGAGGCGGCGGTGAAGACGCTCGGGCGGCTGGCCGCGGTGTGCGCGAAACGATGA
Upstream 100 bases:
>100_bases CACCTTGCCGGAAAGAAAAAGAGCACAGTTCTTGGTTATGGTGCGATGCGTCAATAAACTGTACTCTTGCATATCGACAA ACGGACCGGCGGGGCGGGCA
Downstream 100 bases:
>100_bases GGGCGGGGGGATGAAGACGAACGCGGCGAAAGACGGGCGCGATGCATGCGGCGCATGGCGCGAGGACGATGTGCATGCGC CGTGGGCGTGCGATGCGCGG
Product: GntR family transcriptional regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 472; Mature: 472
Protein sequence:
>472_residues MKRYEQLADDIEAMIRRGVYRPGERIPSVRQASVQHRLSITTVVRAYLVLESRGAIESRPQSGYFVRARQDAPALALHAS APVAVSSAVDVSRLVLSTLRSIARDDAVPLGSPYPDATPFPAQRIARHAHAIARRRARWGVIDDLPPGNPELIRQIARRY LEGGVAVDPGEIVVTIGATEAINLCLQAVAKPGDTIAVESPTFYAMLHAIERLGMRAIEVATHPGEGIDIDALARILATE RIAACMVMPNFQNPLGFLMPDERKRALVELLARHDVPAIENDVYHELYYGAARPSTLKAFDARGLVLHCASFSKSLSPAY RVGWAMPGRYRDQVEKLKFLNTLATPAIDQLAIAEYLRHDGYDHHLRRIRKLYAQQASMMAALVRRFFPDGTRLSQPKGG YVLWIELPDGVDAMALYRLALAQKITLGPGHMFSTTLAYRHCIRLNYSYAWSPQIEAAVKTLGRLAAVCAKR
Sequences:
>Translated_472_residues MKRYEQLADDIEAMIRRGVYRPGERIPSVRQASVQHRLSITTVVRAYLVLESRGAIESRPQSGYFVRARQDAPALALHAS APVAVSSAVDVSRLVLSTLRSIARDDAVPLGSPYPDATPFPAQRIARHAHAIARRRARWGVIDDLPPGNPELIRQIARRY LEGGVAVDPGEIVVTIGATEAINLCLQAVAKPGDTIAVESPTFYAMLHAIERLGMRAIEVATHPGEGIDIDALARILATE RIAACMVMPNFQNPLGFLMPDERKRALVELLARHDVPAIENDVYHELYYGAARPSTLKAFDARGLVLHCASFSKSLSPAY RVGWAMPGRYRDQVEKLKFLNTLATPAIDQLAIAEYLRHDGYDHHLRRIRKLYAQQASMMAALVRRFFPDGTRLSQPKGG YVLWIELPDGVDAMALYRLALAQKITLGPGHMFSTTLAYRHCIRLNYSYAWSPQIEAAVKTLGRLAAVCAKR >Mature_472_residues MKRYEQLADDIEAMIRRGVYRPGERIPSVRQASVQHRLSITTVVRAYLVLESRGAIESRPQSGYFVRARQDAPALALHAS APVAVSSAVDVSRLVLSTLRSIARDDAVPLGSPYPDATPFPAQRIARHAHAIARRRARWGVIDDLPPGNPELIRQIARRY LEGGVAVDPGEIVVTIGATEAINLCLQAVAKPGDTIAVESPTFYAMLHAIERLGMRAIEVATHPGEGIDIDALARILATE RIAACMVMPNFQNPLGFLMPDERKRALVELLARHDVPAIENDVYHELYYGAARPSTLKAFDARGLVLHCASFSKSLSPAY RVGWAMPGRYRDQVEKLKFLNTLATPAIDQLAIAEYLRHDGYDHHLRRIRKLYAQQASMMAALVRRFFPDGTRLSQPKGG YVLWIELPDGVDAMALYRLALAQKITLGPGHMFSTTLAYRHCIRLNYSYAWSPQIEAAVKTLGRLAAVCAKR
Specific function: Unknown
COG id: COG1167
COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]
Homologues:
Organism=Homo sapiens, GI7705897, Length=312, Percent_Identity=25.6410256410256, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI33469970, Length=312, Percent_Identity=25.6410256410256, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI4507369, Length=180, Percent_Identity=24.4444444444444, Blast_Score=75, Evalue=2e-13, Organism=Escherichia coli, GI1787710, Length=465, Percent_Identity=41.2903225806452, Blast_Score=375, Evalue=1e-105, Organism=Escherichia coli, GI1790797, Length=464, Percent_Identity=37.0689655172414, Blast_Score=320, Evalue=2e-88, Organism=Saccharomyces cerevisiae, GI6321000, Length=247, Percent_Identity=25.5060728744939, Blast_Score=82, Evalue=2e-16, Organism=Drosophila melanogaster, GI21356535, Length=356, Percent_Identity=23.5955056179775, Blast_Score=90, Evalue=4e-18,
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004839 - InterPro: IPR000524 - InterPro: IPR015424 - InterPro: IPR015421 - InterPro: IPR011991 [H]
Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]
EC number: NA
Molecular weight: Translated: 52310; Mature: 52310
Theoretical pI: Translated: 9.83; Mature: 9.83
Prosite motif: PS50949 HTH_GNTR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRYEQLADDIEAMIRRGVYRPGERIPSVRQASVQHRLSITTVVRAYLVLESRGAIESRP CCHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC QSGYFVRARQDAPALALHASAPVAVSSAVDVSRLVLSTLRSIARDDAVPLGSPYPDATPF CCCEEEEECCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC PAQRIARHAHAIARRRARWGVIDDLPPGNPELIRQIARRYLEGGVAVDPGEIVVTIGATE CHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCEEEEECCHH AINLCLQAVAKPGDTIAVESPTFYAMLHAIERLGMRAIEVATHPGEGIDIDALARILATE HHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHH RIAACMVMPNFQNPLGFLMPDERKRALVELLARHDVPAIENDVYHELYYGAARPSTLKAF HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHH DARGLVLHCASFSKSLSPAYRVGWAMPGRYRDQVEKLKFLNTLATPAIDQLAIAEYLRHD CCCCCEEEHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC GYDHHLRRIRKLYAQQASMMAALVRRFFPDGTRLSQPKGGYVLWIELPDGVDAMALYRLA CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHH LAQKITLGPGHMFSTTLAYRHCIRLNYSYAWSPQIEAAVKTLGRLAAVCAKR HHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MKRYEQLADDIEAMIRRGVYRPGERIPSVRQASVQHRLSITTVVRAYLVLESRGAIESRP CCHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC QSGYFVRARQDAPALALHASAPVAVSSAVDVSRLVLSTLRSIARDDAVPLGSPYPDATPF CCCEEEEECCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC PAQRIARHAHAIARRRARWGVIDDLPPGNPELIRQIARRYLEGGVAVDPGEIVVTIGATE CHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCEEEEECCHH AINLCLQAVAKPGDTIAVESPTFYAMLHAIERLGMRAIEVATHPGEGIDIDALARILATE HHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHH RIAACMVMPNFQNPLGFLMPDERKRALVELLARHDVPAIENDVYHELYYGAARPSTLKAF HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHH DARGLVLHCASFSKSLSPAYRVGWAMPGRYRDQVEKLKFLNTLATPAIDQLAIAEYLRHD CCCCCEEEHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC GYDHHLRRIRKLYAQQASMMAALVRRFFPDGTRLSQPKGGYVLWIELPDGVDAMALYRLA CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHH LAQKITLGPGHMFSTTLAYRHCIRLNYSYAWSPQIEAAVKTLGRLAAVCAKR HHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9097039; 9278503 [H]