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The map label for this gene is yagI [H]

Identifier: 126447850

GI number: 126447850

Start: 922570

End: 923424

Strand: Direct

Name: yagI [H]

Synonym: BMA10247_A0976

Alternate gene names: 126447850

Gene position: 922570-923424 (Clockwise)

Preceding gene: 126447341

Following gene: 126447602

Centisome position: 39.21

GC content: 68.19

Gene sequence:

>855_bases
ATGAGCGAGCCGCTGCTGAAGGACGCCGACGACGCGAGGAATGATTCGAACTACGTCGTACCGGGGCTCGAGCGCGGGCT
GCGGATCCTGGCCGAGTTCTCGCCGCGAGAGCCGGTGCTCGGCGCGCCGGAGCTGTCGAAGCGGCTCGGCATTCCGCGCA
CGACGGTGTTCCGCCTGCTGCAGACGCTCGAATCGCTCGGCTTTCTCGAGCGCGCGGACAAGGATCGCAACTATCGCCTG
GGCGTCGCGGTGCTGCGCCTCGGCTTCGAATACCTGAGCTCGCTCGAGCTGACCGATCTCGGCTTGCCGGTGATCGAAAG
CCTGCGCGATGCGACGGGCTTCACCGCGCACATCGTGATTCGCGACGGCCGCGACGTCGTGTTCGTCGCGAAGGCGCAAA
ACGCGGGGAACGCGTTCGGCTCGGTGCGGGTGAACGTCGGCACGCGCCTGCCCGCGCATGCGACGACGCACGGCCACGTG
CTGATGGGCGACCTGTCGCTCGCGCAGTTGCGCGCGTTGTATCCGGAGCGGGCGCTCGAACGCGTGACGAAGGCGACGCC
CGAGACCGTCGACGCGCTCTTCGACGTGATCCGCGACGATGCGCGGCGCGGCTACGGCATCGGCAACTCGGCGTTCGAGC
GCGACATCTCGGTCGTCACGGCGCCCGTGCGCAACGAAGCGAGCCGGATCGTCGCGGTCGTCACGGTGACGGTGCCGCGG
CCGGAGATCGATGCGGCGCTCGTCGCCGAAGGGCTCGTCGAGAAGGTCGTGCGTGCGGCGGCCGAGCTGTCGCGGCGGCT
GAACTATCGGTCCGACGACGAAAACACCTATTTGAAGGCATTGGGATTGCGATGA

Upstream 100 bases:

>100_bases
TCGCGCGCGCGGGGCACGCCGGCTACGTCGAAGCGCCCGATGCATACAGCGCGTTGATCGACGCCTTTTGCCGTCAATGC
GACGGATCGCGAGGCACACC

Downstream 100 bases:

>100_bases
TCCAGATCGACTTGAGCGGGCAGGTCGCCGTGGTGACGGGCGGCTCGTCCGGCATCGGCTACGCGAGCGCCGAGCTCTTC
CTGCGCGCGGGCGCGTCGGT

Product: IclR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 284; Mature: 283

Protein sequence:

>284_residues
MSEPLLKDADDARNDSNYVVPGLERGLRILAEFSPREPVLGAPELSKRLGIPRTTVFRLLQTLESLGFLERADKDRNYRL
GVAVLRLGFEYLSSLELTDLGLPVIESLRDATGFTAHIVIRDGRDVVFVAKAQNAGNAFGSVRVNVGTRLPAHATTHGHV
LMGDLSLAQLRALYPERALERVTKATPETVDALFDVIRDDARRGYGIGNSAFERDISVVTAPVRNEASRIVAVVTVTVPR
PEIDAALVAEGLVEKVVRAAAELSRRLNYRSDDENTYLKALGLR

Sequences:

>Translated_284_residues
MSEPLLKDADDARNDSNYVVPGLERGLRILAEFSPREPVLGAPELSKRLGIPRTTVFRLLQTLESLGFLERADKDRNYRL
GVAVLRLGFEYLSSLELTDLGLPVIESLRDATGFTAHIVIRDGRDVVFVAKAQNAGNAFGSVRVNVGTRLPAHATTHGHV
LMGDLSLAQLRALYPERALERVTKATPETVDALFDVIRDDARRGYGIGNSAFERDISVVTAPVRNEASRIVAVVTVTVPR
PEIDAALVAEGLVEKVVRAAAELSRRLNYRSDDENTYLKALGLR
>Mature_283_residues
SEPLLKDADDARNDSNYVVPGLERGLRILAEFSPREPVLGAPELSKRLGIPRTTVFRLLQTLESLGFLERADKDRNYRLG
VAVLRLGFEYLSSLELTDLGLPVIESLRDATGFTAHIVIRDGRDVVFVAKAQNAGNAFGSVRVNVGTRLPAHATTHGHVL
MGDLSLAQLRALYPERALERVTKATPETVDALFDVIRDDARRGYGIGNSAFERDISVVTAPVRNEASRIVAVVTVTVPRP
EIDAALVAEGLVEKVVRAAAELSRRLNYRSDDENTYLKALGLR

Specific function: Unknown

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1786468, Length=251, Percent_Identity=29.8804780876494, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI87082359, Length=245, Percent_Identity=23.6734693877551, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1788581, Length=252, Percent_Identity=26.5873015873016, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1786715, Length=217, Percent_Identity=21.6589861751152, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1788131, Length=200, Percent_Identity=25, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1789999, Length=202, Percent_Identity=24.2574257425743, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 31153; Mature: 31022

Theoretical pI: Translated: 6.98; Mature: 6.98

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEPLLKDADDARNDSNYVVPGLERGLRILAEFSPREPVLGAPELSKRLGIPRTTVFRLL
CCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCHHHHHHHH
QTLESLGFLERADKDRNYRLGVAVLRLGFEYLSSLELTDLGLPVIESLRDATGFTAHIVI
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHCCCCEEEEEE
RDGRDVVFVAKAQNAGNAFGSVRVNVGTRLPAHATTHGHVLMGDLSLAQLRALYPERALE
ECCCCEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHH
RVTKATPETVDALFDVIRDDARRGYGIGNSAFERDISVVTAPVRNEASRIVAVVTVTVPR
HHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHCHHEEECCCCCCCCEEEEEEEEECCC
PEIDAALVAEGLVEKVVRAAAELSRRLNYRSDDENTYLKALGLR
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHEECCC
>Mature Secondary Structure 
SEPLLKDADDARNDSNYVVPGLERGLRILAEFSPREPVLGAPELSKRLGIPRTTVFRLL
CCCCCCCCCCCCCCCCEECCCHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCHHHHHHHH
QTLESLGFLERADKDRNYRLGVAVLRLGFEYLSSLELTDLGLPVIESLRDATGFTAHIVI
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHCCCCEEEEEE
RDGRDVVFVAKAQNAGNAFGSVRVNVGTRLPAHATTHGHVLMGDLSLAQLRALYPERALE
ECCCCEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHH
RVTKATPETVDALFDVIRDDARRGYGIGNSAFERDISVVTAPVRNEASRIVAVVTVTVPR
HHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHCHHEEECCCCCCCCEEEEEEEEECCC
PEIDAALVAEGLVEKVVRAAAELSRRLNYRSDDENTYLKALGLR
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]