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The map label for this gene is yciR [C]

Identifier: 126447769

GI number: 126447769

Start: 1700120

End: 1702186

Strand: Direct

Name: yciR [C]

Synonym: BMA10247_A1766

Alternate gene names: 126447769

Gene position: 1700120-1702186 (Clockwise)

Preceding gene: 126446161

Following gene: 126447226

Centisome position: 72.26

GC content: 68.31

Gene sequence:

>2067_bases
ATGCACGGCACCTACAACCTTTGGCTGGTCGCGCTCTCGCTTGCGGTCGCCACGCTCGCCTCCTATACCGCGCTCGACCT
GTCGGGCCGGATCGCGCTGCTCGCGCACGGCCGGCTGCGCCATGCGTGGCTCGCCGGCAGCGCGGTCGCGATGGGCGTCG
GCATCGGGTCGATGCACGTCATCGGCGTGCTGTCGGTGACGCTACCCATCCGCATCGGCTTCGACGCCGCGATCACCGGC
CTGTCGCTCGCGCTCGCGATCGTGGTGTCCGGCTTCGCGCTGTATACGATCGCCGGCGCCCAACTGACGAGGCTGCGGCT
CGGCATCGGCGGCGTTCTGATGGGGCTCGGCATCGCGGGCATGCATTACACCGGCGACGCCGCGATGCGGATGAAGCCCG
CCATCGAGTACGACCCGCTGCTGTTCACGGCATCGATCGTCATCGCGCTCGTCGCCTCGACGGTCGCGCTATGGATCGCG
CAGACGCTCATCGGCATCGGCCGATCGCGGCTGGCCCGCATCGGCGCGGCCGGCGTGATGGGCGCGGCGATCACCGGCAT
GCACTACACCGCCTACGCCGCCGCGATCTTCGCCCCCGGCTCGACCTGCGGCGCGGCGACCGGCATCGATCTGCGCTGGC
TCGCGGCGACCGTCGCGCTCTTCACGGTCGCGATCCTGATCGTCGCGCTGATCCTGTCGCACTTCGACGTGCGCACGACG
CTGCTCGCCGGATCGGTTTCGCGCCTGAGCGGCCAGATCGTGCGCATGGCCGCATTCGACACGCTCACGGATCTGCCGAA
CCGCCACACGCTGAACGAGCACCTCGGCCGCGCGCTCGCGGCGGCGCGGGCGCGCGGCGGCAAGCTGGCGATCCTGTTCA
TGGATCTCGACGGATTCAAGACCATCAACGATTCGCTCGGCCACCCGGCCGGCGACGAAGTGCTGAAAACCTTCTCGCAG
CGGCTGCTGCGCTGCGTGCGAGACGGCGACATCGTCGCGCGCCTCGGCGGCGACGAATTCGTCGTGCTGCTGGAGAGCGT
TTCGTCGGACGATGAAGCGGCCCGCGTCGCGCGCGATGTCCTCGAACGGATGCGCAAGGGGCGCTGGAACGACGGGCAGG
CGCTACAGGTCACGCCGAGCATCGGCATCGCGCTATATCCGAAGGACGGCGATACGGCCGACACGCTGCTCAGGCACGCC
GATGCGGCGATGTATGCGGCCAAGCGCGGCGGCCGCTGCACCTACCGCTTCTTCGAGGCGACGATGGACGAGGCGGCGGC
GCGGGCGCTCAAGCTTCAGCACGCGCTGCACGAAGCGCTCGATTCCGACTACTTCTCGCTGTGCTTCCAGCCGAAATTCC
GCTGCGACGGCCACCGGCTCGCGGGCGCGGAAGCGCTGTTGCGCCTGAATCATCCGACGCTCGGCAAACTCGCGCCGATG
GAATTCATCCCCGTGGCCGAACGCTCCGGCCAGATCATCGAGATCGGCTACTGGGTGATCCGCGAAACGTGCCGGCACCT
CAGACGCTGGCGGTCCGCGCACAGGGCGGCCTGCCGCATCGCGATCAATCTGTCGCCTCGGCAGCTCGCGCAGCCGGATC
TCGTCGCGAACATCCTCGAGATCGTGCGCGCCGAGCACGTCGAGCCGCGCCAGTTGATGTTCGAGATCACCGAATCGGTC
GCGATGGAAGACCCGCCGCGCACGATCGAGATGATCCGGCTGTTCCAGGCGCACGGCTTCGAGATCGCGATCGACGACTT
CGGCACCGGCTATTCGAGCCTCGCCTATCTGCAGCGATTCGGCGCGAAGCAGCTCAAGATCGACCGATTCTTCACCCACG
CGCTCGACGAGCAAGGCCACGAAGGCGGCGCGATCGTCTCCGCGATCATCGCGCTCGCCCACTCGCTCGCGATGGACGTG
GTCGCCGAAGGCGTCGAGACGCGCTCGCAGCTCGACCGGCTCAAGACGCTGATGTGCGATGAAATCCAAGGGTTCCTGCT
CGGCCGCCCCGTGCCGCCGGAAGAGTTCGAGGCGATGGTGCCGCTGCACTCCGAGGCGCCGGCATGA

Upstream 100 bases:

>100_bases
CGGCGCGAATCGCCCCTCGCCGATCCGGGAAAGCCCGCTCTACGGAAAGGGCGCGCACACGCCGATAAACCCGTGAAATC
CGCCTGTCCGTCGAGAGTCC

Downstream 100 bases:

>100_bases
CGGTGACGCGGCGCGCGGCCGCGCGCGTGGTTCGGCCGCTTTGCCGCTGGTTGGCGTTTGGGGGTTGGGCTGAGGTTTCG
GACCGGGAGTCGGGCGCTTG

Product: EAL/GGDEF domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 688; Mature: 688

Protein sequence:

>688_residues
MHGTYNLWLVALSLAVATLASYTALDLSGRIALLAHGRLRHAWLAGSAVAMGVGIGSMHVIGVLSVTLPIRIGFDAAITG
LSLALAIVVSGFALYTIAGAQLTRLRLGIGGVLMGLGIAGMHYTGDAAMRMKPAIEYDPLLFTASIVIALVASTVALWIA
QTLIGIGRSRLARIGAAGVMGAAITGMHYTAYAAAIFAPGSTCGAATGIDLRWLAATVALFTVAILIVALILSHFDVRTT
LLAGSVSRLSGQIVRMAAFDTLTDLPNRHTLNEHLGRALAAARARGGKLAILFMDLDGFKTINDSLGHPAGDEVLKTFSQ
RLLRCVRDGDIVARLGGDEFVVLLESVSSDDEAARVARDVLERMRKGRWNDGQALQVTPSIGIALYPKDGDTADTLLRHA
DAAMYAAKRGGRCTYRFFEATMDEAAARALKLQHALHEALDSDYFSLCFQPKFRCDGHRLAGAEALLRLNHPTLGKLAPM
EFIPVAERSGQIIEIGYWVIRETCRHLRRWRSAHRAACRIAINLSPRQLAQPDLVANILEIVRAEHVEPRQLMFEITESV
AMEDPPRTIEMIRLFQAHGFEIAIDDFGTGYSSLAYLQRFGAKQLKIDRFFTHALDEQGHEGGAIVSAIIALAHSLAMDV
VAEGVETRSQLDRLKTLMCDEIQGFLLGRPVPPEEFEAMVPLHSEAPA

Sequences:

>Translated_688_residues
MHGTYNLWLVALSLAVATLASYTALDLSGRIALLAHGRLRHAWLAGSAVAMGVGIGSMHVIGVLSVTLPIRIGFDAAITG
LSLALAIVVSGFALYTIAGAQLTRLRLGIGGVLMGLGIAGMHYTGDAAMRMKPAIEYDPLLFTASIVIALVASTVALWIA
QTLIGIGRSRLARIGAAGVMGAAITGMHYTAYAAAIFAPGSTCGAATGIDLRWLAATVALFTVAILIVALILSHFDVRTT
LLAGSVSRLSGQIVRMAAFDTLTDLPNRHTLNEHLGRALAAARARGGKLAILFMDLDGFKTINDSLGHPAGDEVLKTFSQ
RLLRCVRDGDIVARLGGDEFVVLLESVSSDDEAARVARDVLERMRKGRWNDGQALQVTPSIGIALYPKDGDTADTLLRHA
DAAMYAAKRGGRCTYRFFEATMDEAAARALKLQHALHEALDSDYFSLCFQPKFRCDGHRLAGAEALLRLNHPTLGKLAPM
EFIPVAERSGQIIEIGYWVIRETCRHLRRWRSAHRAACRIAINLSPRQLAQPDLVANILEIVRAEHVEPRQLMFEITESV
AMEDPPRTIEMIRLFQAHGFEIAIDDFGTGYSSLAYLQRFGAKQLKIDRFFTHALDEQGHEGGAIVSAIIALAHSLAMDV
VAEGVETRSQLDRLKTLMCDEIQGFLLGRPVPPEEFEAMVPLHSEAPA
>Mature_688_residues
MHGTYNLWLVALSLAVATLASYTALDLSGRIALLAHGRLRHAWLAGSAVAMGVGIGSMHVIGVLSVTLPIRIGFDAAITG
LSLALAIVVSGFALYTIAGAQLTRLRLGIGGVLMGLGIAGMHYTGDAAMRMKPAIEYDPLLFTASIVIALVASTVALWIA
QTLIGIGRSRLARIGAAGVMGAAITGMHYTAYAAAIFAPGSTCGAATGIDLRWLAATVALFTVAILIVALILSHFDVRTT
LLAGSVSRLSGQIVRMAAFDTLTDLPNRHTLNEHLGRALAAARARGGKLAILFMDLDGFKTINDSLGHPAGDEVLKTFSQ
RLLRCVRDGDIVARLGGDEFVVLLESVSSDDEAARVARDVLERMRKGRWNDGQALQVTPSIGIALYPKDGDTADTLLRHA
DAAMYAAKRGGRCTYRFFEATMDEAAARALKLQHALHEALDSDYFSLCFQPKFRCDGHRLAGAEALLRLNHPTLGKLAPM
EFIPVAERSGQIIEIGYWVIRETCRHLRRWRSAHRAACRIAINLSPRQLAQPDLVANILEIVRAEHVEPRQLMFEITESV
AMEDPPRTIEMIRLFQAHGFEIAIDDFGTGYSSLAYLQRFGAKQLKIDRFFTHALDEQGHEGGAIVSAIIALAHSLAMDV
VAEGVETRSQLDRLKTLMCDEIQGFLLGRPVPPEEFEAMVPLHSEAPA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=422, Percent_Identity=35.0710900473934, Blast_Score=254, Evalue=1e-68,
Organism=Escherichia coli, GI87081921, Length=436, Percent_Identity=31.8807339449541, Blast_Score=212, Evalue=5e-56,
Organism=Escherichia coli, GI226510982, Length=419, Percent_Identity=30.7875894988067, Blast_Score=187, Evalue=1e-48,
Organism=Escherichia coli, GI1790496, Length=248, Percent_Identity=35.4838709677419, Blast_Score=135, Evalue=8e-33,
Organism=Escherichia coli, GI1788849, Length=468, Percent_Identity=28.8461538461538, Blast_Score=133, Evalue=3e-32,
Organism=Escherichia coli, GI87081743, Length=244, Percent_Identity=31.9672131147541, Blast_Score=124, Evalue=2e-29,
Organism=Escherichia coli, GI1788502, Length=240, Percent_Identity=32.5, Blast_Score=122, Evalue=6e-29,
Organism=Escherichia coli, GI87081845, Length=250, Percent_Identity=29.2, Blast_Score=117, Evalue=3e-27,
Organism=Escherichia coli, GI87081980, Length=262, Percent_Identity=31.6793893129771, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI1786507, Length=244, Percent_Identity=31.9672131147541, Blast_Score=112, Evalue=6e-26,
Organism=Escherichia coli, GI87082096, Length=436, Percent_Identity=24.7706422018349, Blast_Score=110, Evalue=3e-25,
Organism=Escherichia coli, GI145693134, Length=165, Percent_Identity=37.5757575757576, Blast_Score=107, Evalue=3e-24,
Organism=Escherichia coli, GI1787055, Length=230, Percent_Identity=32.1739130434783, Blast_Score=106, Evalue=4e-24,
Organism=Escherichia coli, GI1787262, Length=219, Percent_Identity=29.2237442922374, Blast_Score=97, Evalue=4e-21,
Organism=Escherichia coli, GI1788381, Length=190, Percent_Identity=34.7368421052632, Blast_Score=97, Evalue=4e-21,
Organism=Escherichia coli, GI87081977, Length=159, Percent_Identity=37.1069182389937, Blast_Score=97, Evalue=5e-21,
Organism=Escherichia coli, GI1787802, Length=200, Percent_Identity=31.5, Blast_Score=91, Evalue=3e-19,
Organism=Escherichia coli, GI87081881, Length=166, Percent_Identity=34.3373493975904, Blast_Score=80, Evalue=6e-16,
Organism=Escherichia coli, GI1786584, Length=189, Percent_Identity=29.6296296296296, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI1787816, Length=165, Percent_Identity=30.3030303030303, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI87082007, Length=203, Percent_Identity=33.0049261083744, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1788956, Length=160, Percent_Identity=33.75, Blast_Score=74, Evalue=4e-14,
Organism=Escherichia coli, GI87081974, Length=198, Percent_Identity=26.7676767676768, Blast_Score=73, Evalue=6e-14,
Organism=Escherichia coli, GI1787410, Length=154, Percent_Identity=33.7662337662338, Blast_Score=70, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 74316; Mature: 74316

Theoretical pI: Translated: 7.39; Mature: 7.39

Prosite motif: PS50924 MHYT ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHGTYNLWLVALSLAVATLASYTALDLSGRIALLAHGRLRHAWLAGSAVAMGVGIGSMHV
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCHHHHHCCCCHHHH
IGVLSVTLPIRIGFDAAITGLSLALAIVVSGFALYTIAGAQLTRLRLGIGGVLMGLGIAG
HHHHHHHEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
MHYTGDAAMRMKPAIEYDPLLFTASIVIALVASTVALWIAQTLIGIGRSRLARIGAAGVM
EEECCCCHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
GAAITGMHYTAYAAAIFAPGSTCGAATGIDLRWLAATVALFTVAILIVALILSHFDVRTT
HHHHHCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
LLAGSVSRLSGQIVRMAAFDTLTDLPNRHTLNEHLGRALAAARARGGKLAILFMDLDGFK
HHHCCHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCC
TINDSLGHPAGDEVLKTFSQRLLRCVRDGDIVARLGGDEFVVLLESVSSDDEAARVARDV
HHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEECCCCCHHHHHHHHHH
LERMRKGRWNDGQALQVTPSIGIALYPKDGDTADTLLRHADAAMYAAKRGGRCTYRFFEA
HHHHHCCCCCCCCEEEEECCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEHHHHHH
TMDEAAARALKLQHALHEALDSDYFSLCFQPKFRCDGHRLAGAEALLRLNHPTLGKLAPM
HHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCEEHHHHHHHCCCCCCCCCCCCC
EFIPVAERSGQIIEIGYWVIRETCRHLRRWRSAHRAACRIAINLSPRQLAQPDLVANILE
CEEECCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCHHHHCCHHHHHHHHH
IVRAEHVEPRQLMFEITESVAMEDPPRTIEMIRLFQAHGFEIAIDDFGTGYSSLAYLQRF
HHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHC
GAKQLKIDRFFTHALDEQGHEGGAIVSAIIALAHSLAMDVVAEGVETRSQLDRLKTLMCD
CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EIQGFLLGRPVPPEEFEAMVPLHSEAPA
HHHHHHCCCCCCHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MHGTYNLWLVALSLAVATLASYTALDLSGRIALLAHGRLRHAWLAGSAVAMGVGIGSMHV
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCHHHHHCCCCHHHH
IGVLSVTLPIRIGFDAAITGLSLALAIVVSGFALYTIAGAQLTRLRLGIGGVLMGLGIAG
HHHHHHHEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
MHYTGDAAMRMKPAIEYDPLLFTASIVIALVASTVALWIAQTLIGIGRSRLARIGAAGVM
EEECCCCHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
GAAITGMHYTAYAAAIFAPGSTCGAATGIDLRWLAATVALFTVAILIVALILSHFDVRTT
HHHHHCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
LLAGSVSRLSGQIVRMAAFDTLTDLPNRHTLNEHLGRALAAARARGGKLAILFMDLDGFK
HHHCCHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCC
TINDSLGHPAGDEVLKTFSQRLLRCVRDGDIVARLGGDEFVVLLESVSSDDEAARVARDV
HHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEECCCCCHHHHHHHHHH
LERMRKGRWNDGQALQVTPSIGIALYPKDGDTADTLLRHADAAMYAAKRGGRCTYRFFEA
HHHHHCCCCCCCCEEEEECCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEHHHHHH
TMDEAAARALKLQHALHEALDSDYFSLCFQPKFRCDGHRLAGAEALLRLNHPTLGKLAPM
HHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCEEHHHHHHHCCCCCCCCCCCCC
EFIPVAERSGQIIEIGYWVIRETCRHLRRWRSAHRAACRIAINLSPRQLAQPDLVANILE
CEEECCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCHHHHCCHHHHHHHHH
IVRAEHVEPRQLMFEITESVAMEDPPRTIEMIRLFQAHGFEIAIDDFGTGYSSLAYLQRF
HHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHC
GAKQLKIDRFFTHALDEQGHEGGAIVSAIIALAHSLAMDVVAEGVETRSQLDRLKTLMCD
CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EIQGFLLGRPVPPEEFEAMVPLHSEAPA
HHHHHHCCCCCCHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]