Definition | Burkholderia mallei NCTC 10247 chromosome II, complete genome. |
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Accession | NC_009079 |
Length | 2,352,693 |
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The map label for this gene is mocB [H]
Identifier: 126447749
GI number: 126447749
Start: 2007736
End: 2008629
Strand: Reverse
Name: mocB [H]
Synonym: BMA10247_A2074
Alternate gene names: 126447749
Gene position: 2008629-2007736 (Counterclockwise)
Preceding gene: 126446119
Following gene: 126447175
Centisome position: 85.38
GC content: 65.55
Gene sequence:
>894_bases ATGAAAGGCCAGTTCATGCAGAACTGGGTGCGCGAGATCAAGGCGCATCCGGCCGTGAAGAGCGGCGCCGTGCAGCTCAC GGTGTTCGACGGCAACTACGACGCGCTCACGCAGAACAACCAGATCGAGACGATGCTCACGCAGCAGTACAGCGGCATTT TGTTCGTGCCGATCGACACGAAGGCGGGGATCGGCGTTGCGGCGCGCGCGGGCGCCTCCGACACGCCGCTCGTCGCGTCG AACACGATGCTCGCGACGCCGAAGGTGCCGTACATCGGCAACGACGACGTCGAGGGCGGTCGCCTGCAGGCCGAGGCGCT CGCCAGGCGGATCGGCGGCAAGGGCAATGTCGTGATCATCCAGGGGCCGATCGGCCAGTCCGCGCAGATCGATCGCGAGA AGGGCGAGATGGAGGTGCTCGCGAAATATCCGGGCATCAAGGTGATCGAGAAGAAGACCGCGAACTGGTCGCGCGCGGAA GCGATGAACCTGATGGAAGACTGGCTGAACGCGCATCCGAAGCAGATCAACGGCGTGATCGCGCAGAACGACGATATGGC GCTCGGCGCGTTGCAGGCGATCAAGAACCGCGGGCTCACGCCGAAGGACATCCCGATCACGTCGATCGACGGGATGCCCG ACGCGATCCAGGCCGCCAAGCGCGGCGAGATCACGACGTTCCTGCAGGACGCGCAGGCGCAATCGCAAGGCGCGCTCGAC CTCGTGCTGCGGCAGCTCGTCGGCGCGGGCTACAAGCCGCAATCGGTGATCTGGCAGCGCTACGCGAAGGATCTGAAGTG GGACGGCGGCACCGCGAAGCGCTACATCCTGCCGTGGGTGCCCGTCACGCCGGCGAACGCCGATCAGCTGTACAAGCAGG TCACGGGCGGTTGA
Upstream 100 bases:
>100_bases GGCCGCGGCGGCGCTCGGCGCGACGCTCGCGATCGCGGCGGCGGGGAGCGCGGCGCACGCGGCGAGCGGGCCGTATCGCA TCGGCGCGGCGGTCTACGGA
Downstream 100 bases:
>100_bases GGGCGGCGGCCATGACGAATCTCTGGGATAGGGCGTTCGACCTGACGGGGCGCGTCGCACTCGTGACGGGCGGCGCGGCG GGCATCGGCCATGCGTGCGC
Product: carbohydrate ABC transporter periplasmic sugar-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 297; Mature: 297
Protein sequence:
>297_residues MKGQFMQNWVREIKAHPAVKSGAVQLTVFDGNYDALTQNNQIETMLTQQYSGILFVPIDTKAGIGVAARAGASDTPLVAS NTMLATPKVPYIGNDDVEGGRLQAEALARRIGGKGNVVIIQGPIGQSAQIDREKGEMEVLAKYPGIKVIEKKTANWSRAE AMNLMEDWLNAHPKQINGVIAQNDDMALGALQAIKNRGLTPKDIPITSIDGMPDAIQAAKRGEITTFLQDAQAQSQGALD LVLRQLVGAGYKPQSVIWQRYAKDLKWDGGTAKRYILPWVPVTPANADQLYKQVTGG
Sequences:
>Translated_297_residues MKGQFMQNWVREIKAHPAVKSGAVQLTVFDGNYDALTQNNQIETMLTQQYSGILFVPIDTKAGIGVAARAGASDTPLVAS NTMLATPKVPYIGNDDVEGGRLQAEALARRIGGKGNVVIIQGPIGQSAQIDREKGEMEVLAKYPGIKVIEKKTANWSRAE AMNLMEDWLNAHPKQINGVIAQNDDMALGALQAIKNRGLTPKDIPITSIDGMPDAIQAAKRGEITTFLQDAQAQSQGALD LVLRQLVGAGYKPQSVIWQRYAKDLKWDGGTAKRYILPWVPVTPANADQLYKQVTGG >Mature_297_residues MKGQFMQNWVREIKAHPAVKSGAVQLTVFDGNYDALTQNNQIETMLTQQYSGILFVPIDTKAGIGVAARAGASDTPLVAS NTMLATPKVPYIGNDDVEGGRLQAEALARRIGGKGNVVIIQGPIGQSAQIDREKGEMEVLAKYPGIKVIEKKTANWSRAE AMNLMEDWLNAHPKQINGVIAQNDDMALGALQAIKNRGLTPKDIPITSIDGMPDAIQAAKRGEITTFLQDAQAQSQGALD LVLRQLVGAGYKPQSVIWQRYAKDLKWDGGTAKRYILPWVPVTPANADQLYKQVTGG
Specific function: Involved in rhizopine (L-3-O-methyl-scyllo-inosamine) catabolism. Could be involved in its high affinity transport [H]
COG id: COG1879
COG function: function code G; ABC-type sugar transport system, periplasmic component
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 2 family [H]
Homologues:
Organism=Escherichia coli, GI1790674, Length=208, Percent_Identity=32.6923076923077, Blast_Score=99, Evalue=4e-22, Organism=Escherichia coli, GI1790192, Length=195, Percent_Identity=29.7435897435897, Blast_Score=85, Evalue=5e-18, Organism=Escherichia coli, GI1788473, Length=263, Percent_Identity=28.1368821292776, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1790526, Length=201, Percent_Identity=26.865671641791, Blast_Score=71, Evalue=8e-14, Organism=Escherichia coli, GI1789990, Length=198, Percent_Identity=30.8080808080808, Blast_Score=65, Evalue=4e-12,
Paralogues:
None
Copy number: 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001761 [H]
Pfam domain/function: PF00532 Peripla_BP_1 [H]
EC number: NA
Molecular weight: Translated: 32162; Mature: 32162
Theoretical pI: Translated: 9.41; Mature: 9.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKGQFMQNWVREIKAHPAVKSGAVQLTVFDGNYDALTQNNQIETMLTQQYSGILFVPIDT CCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCEEEEEECC KAGIGVAARAGASDTPLVASNTMLATPKVPYIGNDDVEGGRLQAEALARRIGGKGNVVII CCCCCEEECCCCCCCCEEECCCEEECCCCCCCCCCCCCCCEEHHHHHHHHHCCCCCEEEE QGPIGQSAQIDREKGEMEVLAKYPGIKVIEKKTANWSRAEAMNLMEDWLNAHPKQINGVI ECCCCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHCCEE AQNDDMALGALQAIKNRGLTPKDIPITSIDGMPDAIQAAKRGEITTFLQDAQAQSQGALD ECCCCHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHCCCHHHHHHHHHHHCCCHHH LVLRQLVGAGYKPQSVIWQRYAKDLKWDGGTAKRYILPWVPVTPANADQLYKQVTGG HHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHCCC >Mature Secondary Structure MKGQFMQNWVREIKAHPAVKSGAVQLTVFDGNYDALTQNNQIETMLTQQYSGILFVPIDT CCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCEEEEEECC KAGIGVAARAGASDTPLVASNTMLATPKVPYIGNDDVEGGRLQAEALARRIGGKGNVVII CCCCCEEECCCCCCCCEEECCCEEECCCCCCCCCCCCCCCEEHHHHHHHHHCCCCCEEEE QGPIGQSAQIDREKGEMEVLAKYPGIKVIEKKTANWSRAEAMNLMEDWLNAHPKQINGVI ECCCCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHCCEE AQNDDMALGALQAIKNRGLTPKDIPITSIDGMPDAIQAAKRGEITTFLQDAQAQSQGALD ECCCCHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHCCCHHHHHHHHHHHCCCHHH LVLRQLVGAGYKPQSVIWQRYAKDLKWDGGTAKRYILPWVPVTPANADQLYKQVTGG HHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7845353 [H]