Click here to switch to the map view.

The map label for this gene is ychF [H]

Identifier: 126447580

GI number: 126447580

Start: 1854095

End: 1855189

Strand: Direct

Name: ychF [H]

Synonym: BMA10247_A1923

Alternate gene names: 126447580

Gene position: 1854095-1855189 (Clockwise)

Preceding gene: 126445756

Following gene: 126447059

Centisome position: 78.81

GC content: 65.11

Gene sequence:

>1095_bases
ATGAGCCTCAAATGCGGCATCGTCGGCTTGCCCAACGTCGGCAAGTCCACCCTGTTCAACGCGCTGACGAAGGCCGGCAT
CGCCGCCGAGAACTATCCGTTCTGCACGATCGAGCCGAACGTCGGCGTCGTCGAGGTGCCTGACGCACGCCTGAAGGCGC
TCGCCGAAATCATCAAGCCCGAGCGCGTCGTGCCGGCCGTCGTCGAATTCGTCGACATCGCGGGCCTCGTCGCCGGCGCG
AGCAAGGGCGAGGGCCTCGGCAACCAGTTCCTCGCGAACATCCGCGAAACCGATGCGATCACGCACGTCGTGCGCTGCTT
CGAGGACGAGAACGTCATCCACGTCGCCGGCAAGGTGAGCCCGCTCGACGACATCGAAGTCATCAACACCGAGCTCGCGC
TCGCCGACCTCGGCACCGTCGAGAAGGCGCTCGCCCGCTATTCGAAGGCGGCGAAATCGGGCAACGACAAGGAAGCGGCG
AAGCTCGTCGCGGTGCTCGACAAGGCGCGCGCGCACCTCGATCAGGGCAAGGCCGTGCGCGGGCTCGATCTGTCCGACGA
CGAGAGGGCGCTCCTCAAGCCGTTCTGCCTGATCACCGCGAAGCCGGCGATGTACGTCGCGAACGTGAAGGAAGACGGCT
TCGAGAACAATCCGCATCTCGACGCGGTGCGCCGGTACGCGGAAAGCGAGAAGTCGCCGGTCGTCGCGGTGTGCGCGGCG
ATCGAGGCGGAGATCGCCGATCTCGACGATGCCGACAAGGAAGCGTTCCTCGCCGACATGGGCATGGACGAGCCGGGCCT
CGACCGCGTGATCCGTGCGGGCTTCAAGCTGCTCGGGCTGCAGACGTACTTCACCGCGGGCGTGAAGGAAGTGCGCGCGT
GGACGATCCACATCGGCGACACCGCGCCGCAAGCGGCGGGCGTGATCCATACGGATTTCGAGCGCGGCTTCATTCGCGCG
CAGACGATCGCATACGACGATTTCATCGCGTACAAGGGCGAGCAAGGCGCGAAGGAAGCGGGCAAGATGCGCGCGGAAGG
CAAGGAATACGTCGTGCACGATGGCGATGTGATGAACTTCCTGTTCAACGTCTGA

Upstream 100 bases:

>100_bases
CCGCCCCGGATTTCGTCCAGCGACGGCCGCGCGCGGCTTCACCGGCGCACTCGACGCGACTCGCGGACCAGCCGTAACCC
ATTGAATCCCGAAGGAACCC

Downstream 100 bases:

>100_bases
GCGTTACGCCTCGGACGACGGCATTTCACGACGTGCCAAAATCGCAAAAAAGCCCGCGACCGGCGGGCTTTTTCGCATTC
CAGGGGGCTTCATCCGGTTC

Product: GTP-dependent nucleic acid-binding protein EngD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 364; Mature: 363

Protein sequence:

>364_residues
MSLKCGIVGLPNVGKSTLFNALTKAGIAAENYPFCTIEPNVGVVEVPDARLKALAEIIKPERVVPAVVEFVDIAGLVAGA
SKGEGLGNQFLANIRETDAITHVVRCFEDENVIHVAGKVSPLDDIEVINTELALADLGTVEKALARYSKAAKSGNDKEAA
KLVAVLDKARAHLDQGKAVRGLDLSDDERALLKPFCLITAKPAMYVANVKEDGFENNPHLDAVRRYAESEKSPVVAVCAA
IEAEIADLDDADKEAFLADMGMDEPGLDRVIRAGFKLLGLQTYFTAGVKEVRAWTIHIGDTAPQAAGVIHTDFERGFIRA
QTIAYDDFIAYKGEQGAKEAGKMRAEGKEYVVHDGDVMNFLFNV

Sequences:

>Translated_364_residues
MSLKCGIVGLPNVGKSTLFNALTKAGIAAENYPFCTIEPNVGVVEVPDARLKALAEIIKPERVVPAVVEFVDIAGLVAGA
SKGEGLGNQFLANIRETDAITHVVRCFEDENVIHVAGKVSPLDDIEVINTELALADLGTVEKALARYSKAAKSGNDKEAA
KLVAVLDKARAHLDQGKAVRGLDLSDDERALLKPFCLITAKPAMYVANVKEDGFENNPHLDAVRRYAESEKSPVVAVCAA
IEAEIADLDDADKEAFLADMGMDEPGLDRVIRAGFKLLGLQTYFTAGVKEVRAWTIHIGDTAPQAAGVIHTDFERGFIRA
QTIAYDDFIAYKGEQGAKEAGKMRAEGKEYVVHDGDVMNFLFNV
>Mature_363_residues
SLKCGIVGLPNVGKSTLFNALTKAGIAAENYPFCTIEPNVGVVEVPDARLKALAEIIKPERVVPAVVEFVDIAGLVAGAS
KGEGLGNQFLANIRETDAITHVVRCFEDENVIHVAGKVSPLDDIEVINTELALADLGTVEKALARYSKAAKSGNDKEAAK
LVAVLDKARAHLDQGKAVRGLDLSDDERALLKPFCLITAKPAMYVANVKEDGFENNPHLDAVRRYAESEKSPVVAVCAAI
EAEIADLDDADKEAFLADMGMDEPGLDRVIRAGFKLLGLQTYFTAGVKEVRAWTIHIGDTAPQAAGVIHTDFERGFIRAQ
TIAYDDFIAYKGEQGAKEAGKMRAEGKEYVVHDGDVMNFLFNV

Specific function: GTP-dependent nucleic acid-binding protein which may act as a translation factor [H]

COG id: COG0012

COG function: function code J; Predicted GTPase, probable translation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI58761500, Length=369, Percent_Identity=42.8184281842818, Blast_Score=298, Evalue=5e-81,
Organism=Homo sapiens, GI58761502, Length=225, Percent_Identity=36.4444444444444, Blast_Score=146, Evalue=3e-35,
Organism=Escherichia coli, GI1787454, Length=364, Percent_Identity=70.3296703296703, Blast_Score=533, Evalue=1e-153,
Organism=Escherichia coli, GI1789574, Length=99, Percent_Identity=32.3232323232323, Blast_Score=62, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17509631, Length=366, Percent_Identity=40.7103825136612, Blast_Score=284, Evalue=5e-77,
Organism=Saccharomyces cerevisiae, GI6319499, Length=370, Percent_Identity=40, Blast_Score=249, Evalue=5e-67,
Organism=Saccharomyces cerevisiae, GI6321773, Length=379, Percent_Identity=35.6200527704486, Blast_Score=204, Evalue=1e-53,
Organism=Saccharomyces cerevisiae, GI6321649, Length=166, Percent_Identity=39.1566265060241, Blast_Score=90, Evalue=7e-19,
Organism=Drosophila melanogaster, GI24640873, Length=367, Percent_Identity=41.41689373297, Blast_Score=286, Evalue=1e-77,
Organism=Drosophila melanogaster, GI24640877, Length=367, Percent_Identity=41.41689373297, Blast_Score=286, Evalue=1e-77,
Organism=Drosophila melanogaster, GI24640875, Length=367, Percent_Identity=41.41689373297, Blast_Score=286, Evalue=1e-77,
Organism=Drosophila melanogaster, GI24640879, Length=325, Percent_Identity=38.7692307692308, Blast_Score=228, Evalue=6e-60,
Organism=Drosophila melanogaster, GI24585318, Length=144, Percent_Identity=31.9444444444444, Blast_Score=69, Evalue=4e-12,

Paralogues:

None

Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012675
- InterPro:   IPR004396
- InterPro:   IPR013029
- InterPro:   IPR006073
- InterPro:   IPR002917
- InterPro:   IPR012676
- InterPro:   IPR023192 [H]

Pfam domain/function: PF01926 MMR_HSR1; PF06071 YchF-GTPase_C [H]

EC number: NA

Molecular weight: Translated: 39169; Mature: 39038

Theoretical pI: Translated: 4.73; Mature: 4.73

Prosite motif: PS00443 GATASE_TYPE_II

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLKCGIVGLPNVGKSTLFNALTKAGIAAENYPFCTIEPNVGVVEVPDARLKALAEIIKP
CCCCCCEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCEEECCHHHHHHHHHHHCC
ERVVPAVVEFVDIAGLVAGASKGEGLGNQFLANIRETDAITHVVRCFEDENVIHVAGKVS
CHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
PLDDIEVINTELALADLGTVEKALARYSKAAKSGNDKEAAKLVAVLDKARAHLDQGKAVR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEE
GLDLSDDERALLKPFCLITAKPAMYVANVKEDGFENNPHLDAVRRYAESEKSPVVAVCAA
CCCCCCCCHHHHCCHHEEEECCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCEEEHHH
IEAEIADLDDADKEAFLADMGMDEPGLDRVIRAGFKLLGLQTYFTAGVKEVRAWTIHIGD
HHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECC
TAPQAAGVIHTDFERGFIRAQTIAYDDFIAYKGEQGAKEAGKMRAEGKEYVVHDGDVMNF
CCCCCCCCEEECCCCCEEEEEEEEEHHHHEECCCCCHHHHHHHHCCCCEEEEECCHHHHH
LFNV
HHCC
>Mature Secondary Structure 
SLKCGIVGLPNVGKSTLFNALTKAGIAAENYPFCTIEPNVGVVEVPDARLKALAEIIKP
CCCCCEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCEEECCHHHHHHHHHHHCC
ERVVPAVVEFVDIAGLVAGASKGEGLGNQFLANIRETDAITHVVRCFEDENVIHVAGKVS
CHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
PLDDIEVINTELALADLGTVEKALARYSKAAKSGNDKEAAKLVAVLDKARAHLDQGKAVR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEE
GLDLSDDERALLKPFCLITAKPAMYVANVKEDGFENNPHLDAVRRYAESEKSPVVAVCAA
CCCCCCCCHHHHCCHHEEEECCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCEEEHHH
IEAEIADLDDADKEAFLADMGMDEPGLDRVIRAGFKLLGLQTYFTAGVKEVRAWTIHIGD
HHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECC
TAPQAAGVIHTDFERGFIRAQTIAYDDFIAYKGEQGAKEAGKMRAEGKEYVVHDGDVMNF
CCCCCCCCEEECCCCCEEEEEEEEEHHHHEECCCCCHHHHHHHHCCCCEEEEECCHHHHH
LFNV
HHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]