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The map label for this gene is soxC [H]

Identifier: 126447124

GI number: 126447124

Start: 1141871

End: 1143130

Strand: Reverse

Name: soxC [H]

Synonym: BMA10247_A1171

Alternate gene names: 126447124

Gene position: 1143130-1141871 (Counterclockwise)

Preceding gene: 262192893

Following gene: 126447825

Centisome position: 48.59

GC content: 71.59

Gene sequence:

>1260_bases
ATGTCTCACGCCCCTGCCGACCCGACGCGCTCGACCGGCGCCGATTATGCATCGCTCGCCGCCCGTTTCCGGCCGATCTT
CGCGCGCATCGCCGAAGGCGCGATCGAGCGCGACCGCACGCGCGCGCTGCCGCACGAACCGATTCGCTGGCTGAAGGAAG
CCGGTTTCGGCGCGTTGCGCGTGCCCGTGCATGCGGGCGGCGCCGGCGCGTCGGTTCCTCAGCTCGTTCAATTGCTGATC
GAGCTCGCGGCCGCGGATTCGAATCTGCCGCAGGCGCTGCGCGGCCATTTCGCCTTCGTCGAGGACTGGCTGAATGCGCC
GCCCGACGCCGCGCGGCGCGCGTGGTTCGACCGCTTCGCGAGCGGCCAGCTCGTCGGCAACGCGTGGACGGAAGTGGGCG
ACGTCGCGCTCGGCGAAGTGCGCACGAAGGTGGCGAAACGCGACGGCGGCTGGGTGGTGAACGGCGAGAAGTACTACAGC
ACCGGAGCGATCTTCGCGGACTGGATCGACGTCTACGCGCAGCGCACGGACGACGGCGGCCCGGTGATCGCCGCGGTCGC
GGCGCGCCAGGACGGCGTGATCCTCGGCGACGACTGGGACGGCTTCGGCCAGGCGACGACGGGCAGCGGCACGACACGCT
TCGTCGACGCGCACGTCGACGAAGCGAACGTCATCGATTTCGCGCGCCGCTTCAAATATCAGACCGCGTTCTACCAGTTG
TTCCATCTCGCGACGCTCGCCGGCATCGGCCGCGCGGTCGAGCGCGACGCGAGCGCGCTCGTGCGCGGGCGCCGCCGGGT
CTACAGCCACGGCAACGCGCCGCGCGTGAGCGACGACGCACAGATCCTGCAGGTCGTCGGCGAGATCTCGGCATGGGCGT
ATGCGGCCGAGGCGATCGCGCTGCGCGCCGCGCAGCCGTCGCAGCGCGCGTACGAAGCGCGCGTCGGCGGCGACGCGGCC
GCCGAGCACGACGCGAACGTCGCGGCCGAAATCGAATCGGCGCAGGGGCAACTGGTGGTGTCGGAGCTCGTGCTGCGCGC
GGCGACGCATCTGTTCGACGCGCTCGGCGCGTCGGCGACGCGCGCGACGAACGCGCTCGACCGTCACTGGCGCAACGCGC
GCACGGTCGCATCGCATAATCCGCTCGTCTACAAGGCGAGGATCGTCGGGGATCGCGCGGTCAACGGAACCGAGCCGCCC
TACGTCTGGCAGATCGGCGCCGGGCCCGGCGGGCCGCGCGAACCGGAACAGGCGGCGTGA

Upstream 100 bases:

>100_bases
GCAACCCGTGCCCCGGCGCCGCTCCCGCGCGCGAATCGCGCACGGCCCGCATCGAATCACGTTCCCTTCACCCGCCCTTC
ACTGACCCGAGGATTTCGCC

Downstream 100 bases:

>100_bases
TCCGGCGTCTGCGCGCGCAGCGCGCGCGGGGGAAGCGGGTTCCATGCCCGATACCCTTGCGGCAGGCGGTGGGCAGTGGG
CCGATCGCCAGCGCGCCGGC

Product: acyl-CoA dehydrogenase-family protein

Products: NA

Alternate protein names: DBT sulfur dioxygenase [H]

Number of amino acids: Translated: 419; Mature: 418

Protein sequence:

>419_residues
MSHAPADPTRSTGADYASLAARFRPIFARIAEGAIERDRTRALPHEPIRWLKEAGFGALRVPVHAGGAGASVPQLVQLLI
ELAAADSNLPQALRGHFAFVEDWLNAPPDAARRAWFDRFASGQLVGNAWTEVGDVALGEVRTKVAKRDGGWVVNGEKYYS
TGAIFADWIDVYAQRTDDGGPVIAAVAARQDGVILGDDWDGFGQATTGSGTTRFVDAHVDEANVIDFARRFKYQTAFYQL
FHLATLAGIGRAVERDASALVRGRRRVYSHGNAPRVSDDAQILQVVGEISAWAYAAEAIALRAAQPSQRAYEARVGGDAA
AEHDANVAAEIESAQGQLVVSELVLRAATHLFDALGASATRATNALDRHWRNARTVASHNPLVYKARIVGDRAVNGTEPP
YVWQIGAGPGGPREPEQAA

Sequences:

>Translated_419_residues
MSHAPADPTRSTGADYASLAARFRPIFARIAEGAIERDRTRALPHEPIRWLKEAGFGALRVPVHAGGAGASVPQLVQLLI
ELAAADSNLPQALRGHFAFVEDWLNAPPDAARRAWFDRFASGQLVGNAWTEVGDVALGEVRTKVAKRDGGWVVNGEKYYS
TGAIFADWIDVYAQRTDDGGPVIAAVAARQDGVILGDDWDGFGQATTGSGTTRFVDAHVDEANVIDFARRFKYQTAFYQL
FHLATLAGIGRAVERDASALVRGRRRVYSHGNAPRVSDDAQILQVVGEISAWAYAAEAIALRAAQPSQRAYEARVGGDAA
AEHDANVAAEIESAQGQLVVSELVLRAATHLFDALGASATRATNALDRHWRNARTVASHNPLVYKARIVGDRAVNGTEPP
YVWQIGAGPGGPREPEQAA
>Mature_418_residues
SHAPADPTRSTGADYASLAARFRPIFARIAEGAIERDRTRALPHEPIRWLKEAGFGALRVPVHAGGAGASVPQLVQLLIE
LAAADSNLPQALRGHFAFVEDWLNAPPDAARRAWFDRFASGQLVGNAWTEVGDVALGEVRTKVAKRDGGWVVNGEKYYST
GAIFADWIDVYAQRTDDGGPVIAAVAARQDGVILGDDWDGFGQATTGSGTTRFVDAHVDEANVIDFARRFKYQTAFYQLF
HLATLAGIGRAVERDASALVRGRRRVYSHGNAPRVSDDAQILQVVGEISAWAYAAEAIALRAAQPSQRAYEARVGGDAAA
EHDANVAAEIESAQGQLVVSELVLRAATHLFDALGASATRATNALDRHWRNARTVASHNPLVYKARIVGDRAVNGTEPPY
VWQIGAGPGGPREPEQAA

Specific function: Part of a pathway to remove covalently bound sulfur from dibenzothiophene (DBT) without breaking carbon-carbon bonds. Sulfur dioxygenase which converts DBT to DBT-sulfone (DBTO2 or DBT 5,5-dioxide) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013107
- InterPro:   IPR006092
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF08028 Acyl-CoA_dh_2; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 44957; Mature: 44826

Theoretical pI: Translated: 6.60; Mature: 6.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.2 %Met     (Translated Protein)
0.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHAPADPTRSTGADYASLAARFRPIFARIAEGAIERDRTRALPHEPIRWLKEAGFGALR
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEE
VPVHAGGAGASVPQLVQLLIELAAADSNLPQALRGHFAFVEDWLNAPPDAARRAWFDRFA
EEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
SGQLVGNAWTEVGDVALGEVRTKVAKRDGGWVVNGEKYYSTGAIFADWIDVYAQRTDDGG
CCCEECHHHHHHHHHHHHHHHHHHHHCCCCEEECCCEEECCCHHHHHHHHHHHHCCCCCC
PVIAAVAARQDGVILGDDWDGFGQATTGSGTTRFVDAHVDEANVIDFARRFKYQTAFYQL
CEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHH
FHLATLAGIGRAVERDASALVRGRRRVYSHGNAPRVSDDAQILQVVGEISAWAYAAEAIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
LRAAQPSQRAYEARVGGDAAAEHDANVAAEIESAQGQLVVSELVLRAATHLFDALGASAT
HHCCCCHHHHHHHHCCCCHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHH
RATNALDRHWRNARTVASHNPLVYKARIVGDRAVNGTEPPYVWQIGAGPGGPREPEQAA
HHHHHHHHHHHHHCHHCCCCCEEEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure 
SHAPADPTRSTGADYASLAARFRPIFARIAEGAIERDRTRALPHEPIRWLKEAGFGALR
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEE
VPVHAGGAGASVPQLVQLLIELAAADSNLPQALRGHFAFVEDWLNAPPDAARRAWFDRFA
EEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
SGQLVGNAWTEVGDVALGEVRTKVAKRDGGWVVNGEKYYSTGAIFADWIDVYAQRTDDGG
CCCEECHHHHHHHHHHHHHHHHHHHHCCCCEEECCCEEECCCHHHHHHHHHHHHCCCCCC
PVIAAVAARQDGVILGDDWDGFGQATTGSGTTRFVDAHVDEANVIDFARRFKYQTAFYQL
CEEEEEEECCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHH
FHLATLAGIGRAVERDASALVRGRRRVYSHGNAPRVSDDAQILQVVGEISAWAYAAEAIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
LRAAQPSQRAYEARVGGDAAAEHDANVAAEIESAQGQLVVSELVLRAATHLFDALGASAT
HHCCCCHHHHHHHHCCCCHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHH
RATNALDRHWRNARTVASHNPLVYKARIVGDRAVNGTEPPYVWQIGAGPGGPREPEQAA
HHHHHHHHHHHHHCHHCCCCCEEEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7961424; 7574582 [H]