The gene/protein map for NC_009079 is currently unavailable.
Definition Burkholderia mallei NCTC 10247 chromosome II, complete genome.
Accession NC_009079
Length 2,352,693

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The map label for this gene is ygfF [C]

Identifier: 126447023

GI number: 126447023

Start: 1233963

End: 1234706

Strand: Direct

Name: ygfF [C]

Synonym: BMA10247_A1272

Alternate gene names: 126447023

Gene position: 1233963-1234706 (Clockwise)

Preceding gene: 126447345

Following gene: 126446696

Centisome position: 52.45

GC content: 72.58

Gene sequence:

>744_bases
ATGAACGCCACGCCCCTCACCCGAGTCGCGCTCGTCACCGGCGCGTCGCGCGGCATCGGCGCGGCCGTCGCGCGGCGCCT
TGCGCGCGACGGCTTTTCGGTCGCCGTCAACTATGCGTCGAGCGGCGCCGAAGCCGACGCGCTCGTCGCCGAGCTGCGCG
CGGGCGGCGCGGCCGCGCTCGCGGTGCGGGCGGACATCGGGCGCGCGGACGACGTGCGCCGGATGTTCGACGCCGTCGAG
CGGCAGCTCGGCCGCGTCGACGTGCTCGTCAACAACGCGGGCATCCTGAAGACGGGGCCGCTCGCCGACGCCACCGACGA
CGCGTTCGACCGGATCTTCGACATCAACGTGCGCGGCACCTTCAACACGCTGCGCGAAGCGGCGAAGCGGCTCGCCGACG
GCGGCCGGATCATCAACTTCTCGAGCACGACGCTCGCGCTGAAGCTGCCCGGCTACGGGCTCTACAACGCGACGAAGGGC
GCGGTCGAGGCGCTCTCGCACGTGTTCGCGAAGGAACTGCGCGGACGGCGGGTGAGCGTGAATGTCGTCGCGCCGGGCCC
GGTCGCGACCTCGCTGTTCCTCGAAGGCAAGACCGACGAGCAGATCCAGGGCTACGCGAAGATGCCGCCGCTCGAGCGCC
TCGGCGAGCCGGAGGACATCGCGGGCGTCGTGTCGTTTCTCGCCGGCCCGGACGGCGGCTGGGTCAACGCGCAGGTGCTG
CGCGCGAACGGCGGGCTCGCTTGA

Upstream 100 bases:

>100_bases
TAAAGCAAATGGAATGATGATATCCATTTGATCATGATTATCTCTGCGATGGAATGGCCGATCATTCGTCCCATCCACCC
ACTTCATCGAGGACCTGATC

Downstream 100 bases:

>100_bases
GCGGGCGCGGCGGCGCGCGGTGACGCGCCGCGGCCCGCGTGACCGGCGGACGCGACGCGACGCGGCGCGCGCTTGTGCGC
CGCGTCGCGTCGCCGTGCGA

Product: short chain dehydrogenase/reductase family oxidoreductase

Products: NA

Alternate protein names: ORFC [H]

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MNATPLTRVALVTGASRGIGAAVARRLARDGFSVAVNYASSGAEADALVAELRAGGAAALAVRADIGRADDVRRMFDAVE
RQLGRVDVLVNNAGILKTGPLADATDDAFDRIFDINVRGTFNTLREAAKRLADGGRIINFSSTTLALKLPGYGLYNATKG
AVEALSHVFAKELRGRRVSVNVVAPGPVATSLFLEGKTDEQIQGYAKMPPLERLGEPEDIAGVVSFLAGPDGGWVNAQVL
RANGGLA

Sequences:

>Translated_247_residues
MNATPLTRVALVTGASRGIGAAVARRLARDGFSVAVNYASSGAEADALVAELRAGGAAALAVRADIGRADDVRRMFDAVE
RQLGRVDVLVNNAGILKTGPLADATDDAFDRIFDINVRGTFNTLREAAKRLADGGRIINFSSTTLALKLPGYGLYNATKG
AVEALSHVFAKELRGRRVSVNVVAPGPVATSLFLEGKTDEQIQGYAKMPPLERLGEPEDIAGVVSFLAGPDGGWVNAQVL
RANGGLA
>Mature_247_residues
MNATPLTRVALVTGASRGIGAAVARRLARDGFSVAVNYASSGAEADALVAELRAGGAAALAVRADIGRADDVRRMFDAVE
RQLGRVDVLVNNAGILKTGPLADATDDAFDRIFDINVRGTFNTLREAAKRLADGGRIINFSSTTLALKLPGYGLYNATKG
AVEALSHVFAKELRGRRVSVNVVAPGPVATSLFLEGKTDEQIQGYAKMPPLERLGEPEDIAGVVSFLAGPDGGWVNAQVL
RANGGLA

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=247, Percent_Identity=34.412955465587, Blast_Score=132, Evalue=3e-31,
Organism=Homo sapiens, GI5031737, Length=237, Percent_Identity=32.4894514767932, Blast_Score=117, Evalue=7e-27,
Organism=Homo sapiens, GI40254992, Length=243, Percent_Identity=34.156378600823, Blast_Score=112, Evalue=2e-25,
Organism=Homo sapiens, GI126723750, Length=255, Percent_Identity=32.5490196078431, Blast_Score=110, Evalue=1e-24,
Organism=Homo sapiens, GI109715829, Length=237, Percent_Identity=34.5991561181435, Blast_Score=104, Evalue=9e-23,
Organism=Homo sapiens, GI15277342, Length=249, Percent_Identity=33.3333333333333, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI7705925, Length=246, Percent_Identity=32.520325203252, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI126723191, Length=185, Percent_Identity=35.1351351351351, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI4758504, Length=257, Percent_Identity=29.9610894941634, Blast_Score=88, Evalue=8e-18,
Organism=Homo sapiens, GI10190704, Length=249, Percent_Identity=29.3172690763052, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI33667109, Length=188, Percent_Identity=31.9148936170213, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI19923817, Length=252, Percent_Identity=26.984126984127, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI83715985, Length=262, Percent_Identity=29.3893129770992, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI4504505, Length=189, Percent_Identity=33.8624338624339, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI209862901, Length=213, Percent_Identity=31.4553990610329, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI19923983, Length=213, Percent_Identity=31.4553990610329, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI59889578, Length=177, Percent_Identity=29.9435028248588, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI40807363, Length=198, Percent_Identity=28.2828282828283, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI31542939, Length=207, Percent_Identity=29.4685990338164, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI4502601, Length=240, Percent_Identity=28.75, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI7657478, Length=214, Percent_Identity=28.9719626168224, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI66933014, Length=183, Percent_Identity=25.6830601092896, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI4503301, Length=198, Percent_Identity=26.7676767676768, Blast_Score=65, Evalue=8e-11,
Organism=Homo sapiens, GI223718074, Length=200, Percent_Identity=33, Blast_Score=64, Evalue=9e-11,
Organism=Escherichia coli, GI2367175, Length=244, Percent_Identity=34.4262295081967, Blast_Score=126, Evalue=1e-30,
Organism=Escherichia coli, GI1788459, Length=245, Percent_Identity=32.6530612244898, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI2367365, Length=241, Percent_Identity=33.195020746888, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1789378, Length=241, Percent_Identity=33.195020746888, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1787335, Length=241, Percent_Identity=32.7800829875519, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1787905, Length=240, Percent_Identity=32.9166666666667, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI87082100, Length=248, Percent_Identity=30.6451612903226, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1790717, Length=239, Percent_Identity=27.1966527196653, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1789208, Length=246, Percent_Identity=28.8617886178862, Blast_Score=100, Evalue=7e-23,
Organism=Escherichia coli, GI87082160, Length=242, Percent_Identity=29.7520661157025, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1786812, Length=245, Percent_Identity=28.1632653061224, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1789057, Length=256, Percent_Identity=28.90625, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1786701, Length=191, Percent_Identity=30.8900523560209, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1787820, Length=230, Percent_Identity=25.2173913043478, Blast_Score=65, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17561402, Length=251, Percent_Identity=30.6772908366534, Blast_Score=110, Evalue=8e-25,
Organism=Caenorhabditis elegans, GI17560676, Length=243, Percent_Identity=30.4526748971193, Blast_Score=108, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI71994604, Length=246, Percent_Identity=28.8617886178862, Blast_Score=107, Evalue=6e-24,
Organism=Caenorhabditis elegans, GI71994600, Length=256, Percent_Identity=27.34375, Blast_Score=99, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI25147288, Length=244, Percent_Identity=31.9672131147541, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17555706, Length=244, Percent_Identity=29.9180327868852, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI115534694, Length=241, Percent_Identity=27.8008298755187, Blast_Score=88, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17562910, Length=256, Percent_Identity=27.734375, Blast_Score=87, Evalue=8e-18,
Organism=Caenorhabditis elegans, GI193204405, Length=255, Percent_Identity=30.1960784313725, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17536025, Length=251, Percent_Identity=29.4820717131474, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17538182, Length=254, Percent_Identity=29.5275590551181, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17544670, Length=242, Percent_Identity=29.3388429752066, Blast_Score=84, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI17562906, Length=261, Percent_Identity=28.735632183908, Blast_Score=84, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI17562908, Length=257, Percent_Identity=29.1828793774319, Blast_Score=80, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI17531453, Length=255, Percent_Identity=29.0196078431373, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17560150, Length=257, Percent_Identity=26.8482490272374, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17560332, Length=265, Percent_Identity=29.811320754717, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17559104, Length=263, Percent_Identity=27.3764258555133, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17568967, Length=188, Percent_Identity=31.3829787234043, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17538486, Length=256, Percent_Identity=26.5625, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17562990, Length=252, Percent_Identity=29.3650793650794, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17538480, Length=265, Percent_Identity=30.5660377358491, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17560220, Length=263, Percent_Identity=29.277566539924, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17561272, Length=207, Percent_Identity=26.5700483091787, Blast_Score=74, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI17562904, Length=259, Percent_Identity=27.027027027027, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17563726, Length=265, Percent_Identity=27.5471698113208, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17536651, Length=256, Percent_Identity=26.953125, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI72000259, Length=262, Percent_Identity=28.2442748091603, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17565030, Length=258, Percent_Identity=28.2945736434109, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17508895, Length=191, Percent_Identity=25.6544502617801, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17508651, Length=254, Percent_Identity=29.1338582677165, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI32563809, Length=213, Percent_Identity=29.1079812206573, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17551412, Length=264, Percent_Identity=28.7878787878788, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17507613, Length=213, Percent_Identity=29.1079812206573, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI71982365, Length=196, Percent_Identity=26.0204081632653, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI193203115, Length=241, Percent_Identity=24.896265560166, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI193203117, Length=241, Percent_Identity=24.896265560166, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17555612, Length=215, Percent_Identity=29.7674418604651, Blast_Score=64, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI71997099, Length=236, Percent_Identity=27.9661016949153, Blast_Score=64, Evalue=8e-11,
Organism=Saccharomyces cerevisiae, GI6322861, Length=232, Percent_Identity=31.4655172413793, Blast_Score=84, Evalue=3e-17,
Organism=Saccharomyces cerevisiae, GI6322067, Length=188, Percent_Identity=30.8510638297872, Blast_Score=76, Evalue=6e-15,
Organism=Saccharomyces cerevisiae, GI6324126, Length=203, Percent_Identity=27.5862068965517, Blast_Score=70, Evalue=4e-13,
Organism=Saccharomyces cerevisiae, GI6320089, Length=202, Percent_Identity=25.2475247524752, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI28571526, Length=249, Percent_Identity=34.9397590361446, Blast_Score=123, Evalue=1e-28,
Organism=Drosophila melanogaster, GI21357041, Length=249, Percent_Identity=35.3413654618474, Blast_Score=119, Evalue=2e-27,
Organism=Drosophila melanogaster, GI24639444, Length=245, Percent_Identity=35.1020408163265, Blast_Score=115, Evalue=4e-26,
Organism=Drosophila melanogaster, GI24644339, Length=245, Percent_Identity=30.6122448979592, Blast_Score=113, Evalue=9e-26,
Organism=Drosophila melanogaster, GI21355319, Length=251, Percent_Identity=30.2788844621514, Blast_Score=112, Evalue=2e-25,
Organism=Drosophila melanogaster, GI23397609, Length=248, Percent_Identity=33.0645161290323, Blast_Score=101, Evalue=6e-22,
Organism=Drosophila melanogaster, GI24663911, Length=239, Percent_Identity=34.7280334728033, Blast_Score=100, Evalue=7e-22,
Organism=Drosophila melanogaster, GI24643142, Length=241, Percent_Identity=30.7053941908714, Blast_Score=99, Evalue=3e-21,
Organism=Drosophila melanogaster, GI281364494, Length=237, Percent_Identity=32.4894514767932, Blast_Score=95, Evalue=4e-20,
Organism=Drosophila melanogaster, GI116007234, Length=235, Percent_Identity=34.0425531914894, Blast_Score=92, Evalue=4e-19,
Organism=Drosophila melanogaster, GI24648693, Length=235, Percent_Identity=34.0425531914894, Blast_Score=89, Evalue=2e-18,
Organism=Drosophila melanogaster, GI21355889, Length=235, Percent_Identity=34.0425531914894, Blast_Score=89, Evalue=2e-18,
Organism=Drosophila melanogaster, GI116007236, Length=254, Percent_Identity=31.496062992126, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI24644337, Length=172, Percent_Identity=34.8837209302326, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24641232, Length=251, Percent_Identity=31.4741035856574, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI116007238, Length=205, Percent_Identity=33.6585365853659, Blast_Score=85, Evalue=4e-17,
Organism=Drosophila melanogaster, GI24648944, Length=244, Percent_Identity=30.7377049180328, Blast_Score=84, Evalue=7e-17,
Organism=Drosophila melanogaster, GI17737361, Length=255, Percent_Identity=30.5882352941176, Blast_Score=81, Evalue=5e-16,
Organism=Drosophila melanogaster, GI24641388, Length=235, Percent_Identity=33.1914893617021, Blast_Score=81, Evalue=8e-16,
Organism=Drosophila melanogaster, GI116007232, Length=186, Percent_Identity=35.4838709677419, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI21355631, Length=169, Percent_Identity=28.9940828402367, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI28571387, Length=253, Percent_Identity=30.0395256916996, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI18859837, Length=231, Percent_Identity=31.1688311688312, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI281364892, Length=169, Percent_Identity=27.810650887574, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI21356301, Length=196, Percent_Identity=30.6122448979592, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI21357673, Length=191, Percent_Identity=28.2722513089005, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24580925, Length=204, Percent_Identity=27.9411764705882, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 25772; Mature: 25772

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MNATPLTRVALVTGASRGIGAAVARRLARDGFSVAVNYASSGAEADALVAELRAGGAAAL
CCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCEEEE
AVRADIGRADDVRRMFDAVERQLGRVDVLVNNAGILKTGPLADATDDAFDRIFDINVRGT
EEEECCCCHHHHHHHHHHHHHHHCCEEEEEECCCCEECCCCCCCCHHHHHHEEEEECCCH
FNTLREAAKRLADGGRIINFSSTTLALKLPGYGLYNATKGAVEALSHVFAKELRGRRVSV
HHHHHHHHHHHHCCCEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEE
NVVAPGPVATSLFLEGKTDEQIQGYAKMPPLERLGEPEDIAGVVSFLAGPDGGWVNAQVL
EEEECCCCEEEEEECCCCCHHHCCCCCCCCHHHCCCCHHHHHHHHHHHCCCCCCEEEEEE
RANGGLA
ECCCCCC
>Mature Secondary Structure
MNATPLTRVALVTGASRGIGAAVARRLARDGFSVAVNYASSGAEADALVAELRAGGAAAL
CCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCEEEE
AVRADIGRADDVRRMFDAVERQLGRVDVLVNNAGILKTGPLADATDDAFDRIFDINVRGT
EEEECCCCHHHHHHHHHHHHHHHCCEEEEEECCCCEECCCCCCCCHHHHHHEEEEECCCH
FNTLREAAKRLADGGRIINFSSTTLALKLPGYGLYNATKGAVEALSHVFAKELRGRRVSV
HHHHHHHHHHHHCCCEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEE
NVVAPGPVATSLFLEGKTDEQIQGYAKMPPLERLGEPEDIAGVVSFLAGPDGGWVNAQVL
EEEECCCCEEEEEECCCCCHHHCCCCCCCCHHHCCCCHHHHHHHHHHHCCCCCCEEEEEE
RANGGLA
ECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8868443 [H]