Definition | Burkholderia mallei NCTC 10247 chromosome II, complete genome. |
---|---|
Accession | NC_009079 |
Length | 2,352,693 |
Click here to switch to the map view.
The map label for this gene is ybhD [H]
Identifier: 126446993
GI number: 126446993
Start: 975765
End: 976676
Strand: Reverse
Name: ybhD [H]
Synonym: BMA10247_A1037
Alternate gene names: 126446993
Gene position: 976676-975765 (Counterclockwise)
Preceding gene: 126447626
Following gene: 126445612
Centisome position: 41.51
GC content: 67.0
Gene sequence:
>912_bases ATGCGATTCGACCTGACCGATCTGCGACTTTTCCTGCACGTCTGCGAAGCCGGCAGCATCACGGGCGGCGCCGAGCGCGC GCACATGACGCTGCAATCCGCGAGCGAGCGGATTCGCGGCATGGAGGAAGAGCTCGGCGTGCCGCTTTTACAGCGCGCGA AGCGCGGCACGCGCGCGACCGAAGCCGGCCGCGCGCTCGAGCATCACGCGCGCGTCGTGCTGCAGCAGATCGACCATATG CGCGGCGAGCTGCAGCAATTCGGCGCGGGGCTGCGCGGCCACATTCGCCTGCTCAGCAACACCGCCGCGCTCAGCGAATA CCTGCCCGACGCGCTCGCCGAATACCTGCCGCGCCACCCGAAGCTGTCGGTGAGCGTCGAGGAGCGCTCGAGCCAGGAGA TCGTCCATGCGATTCGCGGCAAGACCGCCGATTTCGGGATCGTCGCGGATTCGGTCGGCCTCGACGGACTCGAGCAGATG CCGTTTCGCGAGGATTGGCTGATCGCCGTCGCGGCGGTCGATCATTCGCTCGCCGCGCGCGAGCGGGTGGCGTTCGCGGA GCTCGTCGATGCCGACTTCATCGGCATGACGGACGGCAGCGCGCTGCAGGTCCATCTCGCCGACCAGGCGAAGGCGCTCG GCAAGCGGATCGACTACCGCGTTCAACTGAAGAGCTTCGACGCGATCTGCCGATTGATCGAGCGCGGCGTCGGGATCGGC ATCGTGTCGCGCCATGCGGCGCTGCGCGCGCAGCAGACGATGCAGATCCGGCTGATCGAGCTCACGGATCCGTGGGCGCA CCGTCGGCTGACGATCTGTGCGCGCAGCTTCGACGAGCTTCCGAAATACACGCGCGAATTCATCGCGTTTCTCGCGCACG ATCCGGGCAAGGACGAATCGTTTGCAGCCTGA
Upstream 100 bases:
>100_bases ATGCGGAACCCGCGAAGCGGACCTCAGGCACGGCCTGACCGCGACGGCCCGCAATCCTGTTACCGTATCGCCCATTACAA CGACGACGCAAGCCAGCCCC
Downstream 100 bases:
>100_bases TTGCCGTCATTTGGCGGCCGGCGCGCGCCGAACGTCGTTTTATCCGCGCGCGGCCGACAAAAAATGGCGCGAACTGCGGC GCGTTCTCACGCGTGCAGCG
Product: LysR family transcriptional regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 303; Mature: 303
Protein sequence:
>303_residues MRFDLTDLRLFLHVCEAGSITGGAERAHMTLQSASERIRGMEEELGVPLLQRAKRGTRATEAGRALEHHARVVLQQIDHM RGELQQFGAGLRGHIRLLSNTAALSEYLPDALAEYLPRHPKLSVSVEERSSQEIVHAIRGKTADFGIVADSVGLDGLEQM PFREDWLIAVAAVDHSLAARERVAFAELVDADFIGMTDGSALQVHLADQAKALGKRIDYRVQLKSFDAICRLIERGVGIG IVSRHAALRAQQTMQIRLIELTDPWAHRRLTICARSFDELPKYTREFIAFLAHDPGKDESFAA
Sequences:
>Translated_303_residues MRFDLTDLRLFLHVCEAGSITGGAERAHMTLQSASERIRGMEEELGVPLLQRAKRGTRATEAGRALEHHARVVLQQIDHM RGELQQFGAGLRGHIRLLSNTAALSEYLPDALAEYLPRHPKLSVSVEERSSQEIVHAIRGKTADFGIVADSVGLDGLEQM PFREDWLIAVAAVDHSLAARERVAFAELVDADFIGMTDGSALQVHLADQAKALGKRIDYRVQLKSFDAICRLIERGVGIG IVSRHAALRAQQTMQIRLIELTDPWAHRRLTICARSFDELPKYTREFIAFLAHDPGKDESFAA >Mature_303_residues MRFDLTDLRLFLHVCEAGSITGGAERAHMTLQSASERIRGMEEELGVPLLQRAKRGTRATEAGRALEHHARVVLQQIDHM RGELQQFGAGLRGHIRLLSNTAALSEYLPDALAEYLPRHPKLSVSVEERSSQEIVHAIRGKTADFGIVADSVGLDGLEQM PFREDWLIAVAAVDHSLAARERVAFAELVDADFIGMTDGSALQVHLADQAKALGKRIDYRVQLKSFDAICRLIERGVGIG IVSRHAALRAQQTMQIRLIELTDPWAHRRLTICARSFDELPKYTREFIAFLAHDPGKDESFAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI145693105, Length=293, Percent_Identity=24.9146757679181, Blast_Score=107, Evalue=1e-24, Organism=Escherichia coli, GI157672245, Length=248, Percent_Identity=27.0161290322581, Blast_Score=93, Evalue=3e-20, Organism=Escherichia coli, GI1787530, Length=289, Percent_Identity=23.5294117647059, Blast_Score=74, Evalue=9e-15, Organism=Escherichia coli, GI1786713, Length=260, Percent_Identity=28.4615384615385, Blast_Score=74, Evalue=9e-15, Organism=Escherichia coli, GI1790399, Length=248, Percent_Identity=26.2096774193548, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1788748, Length=243, Percent_Identity=23.4567901234568, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1788297, Length=244, Percent_Identity=24.5901639344262, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1787879, Length=195, Percent_Identity=24.6153846153846, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1790208, Length=287, Percent_Identity=22.2996515679443, Blast_Score=68, Evalue=6e-13, Organism=Escherichia coli, GI1788481, Length=244, Percent_Identity=25, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1787806, Length=265, Percent_Identity=22.6415094339623, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1788887, Length=193, Percent_Identity=26.4248704663212, Blast_Score=64, Evalue=9e-12, Organism=Escherichia coli, GI1786401, Length=245, Percent_Identity=22.4489795918367, Blast_Score=62, Evalue=7e-11,
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000847 - InterPro: IPR005119 - InterPro: IPR011991 [H]
Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]
EC number: NA
Molecular weight: Translated: 33689; Mature: 33689
Theoretical pI: Translated: 6.85; Mature: 6.85
Prosite motif: PS50931 HTH_LYSR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRFDLTDLRLFLHVCEAGSITGGAERAHMTLQSASERIRGMEEELGVPLLQRAKRGTRAT CCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHCCCCHH EAGRALEHHARVVLQQIDHMRGELQQFGAGLRGHIRLLSNTAALSEYLPDALAEYLPRHP HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC KLSVSVEERSSQEIVHAIRGKTADFGIVADSVGLDGLEQMPFREDWLIAVAAVDHSLAAR CEEEEHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHCCCCCHHEEEEEHHHHHHHHH ERVAFAELVDADFIGMTDGSALQVHLADQAKALGKRIDYRVQLKSFDAICRLIERGVGIG HHHHHHHHHCCCCEECCCCCEEEEEEHHHHHHHHHHCCEEEEHHHHHHHHHHHHCCCCCC IVSRHAALRAQQTMQIRLIELTDPWAHRRLTICARSFDELPKYTREFIAFLAHDPGKDES HHHHHHHHHHHHCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC FAA CCC >Mature Secondary Structure MRFDLTDLRLFLHVCEAGSITGGAERAHMTLQSASERIRGMEEELGVPLLQRAKRGTRAT CCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHCCCCHH EAGRALEHHARVVLQQIDHMRGELQQFGAGLRGHIRLLSNTAALSEYLPDALAEYLPRHP HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC KLSVSVEERSSQEIVHAIRGKTADFGIVADSVGLDGLEQMPFREDWLIAVAAVDHSLAAR CEEEEHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHCCCCCHHEEEEEHHHHHHHHH ERVAFAELVDADFIGMTDGSALQVHLADQAKALGKRIDYRVQLKSFDAICRLIERGVGIG HHHHHHHHHCCCCEECCCCCEEEEEEHHHHHHHHHHCCEEEEHHHHHHHHHHHHCCCCCC IVSRHAALRAQQTMQIRLIELTDPWAHRRLTICARSFDELPKYTREFIAFLAHDPGKDES HHHHHHHHHHHHCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC FAA CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8905232; 9278503 [H]