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The map label for this gene is sciN

Identifier: 126446927

GI number: 126446927

Start: 2124789

End: 2125292

Strand: Direct

Name: sciN

Synonym: BMA10247_A2187

Alternate gene names: NA

Gene position: 2124789-2125292 (Clockwise)

Preceding gene: 126446315

Following gene: 126446378

Centisome position: 90.31

GC content: 71.03

Gene sequence:

>504_bases
ATGCATCCGACCACCCCCGTTGCCGCCGTCGCGCTCGCGCTCGCGTGCGCCGCGTGCGCGAGCGGCGCGGCCAAGCAGAA
GGAGCCGCTGCGGCTCGAGCTCGCCGTGCGCGCCGCGCCCACGGTCAATCCGGACGATCGGAGCCGGCCGGCTCCGATCG
TCGTGAGCGTCTACGAGCTGAAGACCGACGGCGCATTCAACGCCGCCGATTTCTTCACGCTGCAGGGCCCGGACAAGACC
GTGCTCGCCGACGATCTGCTCGCGCGCGAGCGTTTTCAACTGCGCCCCGGCGAGCGCCGCGTGATCCGGCGCGACGCCGA
TCCGGCGGCGGGCACGCTCGGCGTGGTCGCCGCGTACCGCGATCTGCCGAACTCGGTGTGGCGCGCGGCATATCCGCTGC
CGCCCGCGCGGGACGCCGCATGGTATCGCTTCTCGTCGCCGAAGCTGAAGCTGACCATCGAGCTCGACACGCACGCGATC
AGGATCACCGAACCCGGAAAATGA

Upstream 100 bases:

>100_bases
CCCGCGCGGGGCCCGCCGAGCGGCGCGCGGCAGAGCGCCGTTCGCCGGGCCCGCGCCGCCCTCGGCCGGTTCTCCCCCTC
ACACCCAACGCGTGCCTCGA

Downstream 100 bases:

>100_bases
CATGCACGGCGGACCGAAACCATGAGCTGGCATAACAAGGTCGTCTGGAGCGAGGGGCTTTTCATGCGCCCGCAGCTGTT
CCAGCAGCAGGAGCGCTATC

Product: SciN protein

Products: NA

Alternate protein names: Type VI Secretion Lipoprotein; Type VI Secretion Lipoprotein/VasD; SciN Protein; Replication/Virulence Associated Protein; Type VI Secretion System Protein VasD; Outer Membrane Lipoprotein; Type VI Secretion System Protein Vasd; Type VI Secretion Protein VasD

Number of amino acids: Translated: 167; Mature: 167

Protein sequence:

>167_residues
MHPTTPVAAVALALACAACASGAAKQKEPLRLELAVRAAPTVNPDDRSRPAPIVVSVYELKTDGAFNAADFFTLQGPDKT
VLADDLLARERFQLRPGERRVIRRDADPAAGTLGVVAAYRDLPNSVWRAAYPLPPARDAAWYRFSSPKLKLTIELDTHAI
RITEPGK

Sequences:

>Translated_167_residues
MHPTTPVAAVALALACAACASGAAKQKEPLRLELAVRAAPTVNPDDRSRPAPIVVSVYELKTDGAFNAADFFTLQGPDKT
VLADDLLARERFQLRPGERRVIRRDADPAAGTLGVVAAYRDLPNSVWRAAYPLPPARDAAWYRFSSPKLKLTIELDTHAI
RITEPGK
>Mature_167_residues
MHPTTPVAAVALALACAACASGAAKQKEPLRLELAVRAAPTVNPDDRSRPAPIVVSVYELKTDGAFNAADFFTLQGPDKT
VLADDLLARERFQLRPGERRVIRRDADPAAGTLGVVAAYRDLPNSVWRAAYPLPPARDAAWYRFSSPKLKLTIELDTHAI
RITEPGK

Specific function: Unknown

COG id: COG3521

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18097; Mature: 18097

Theoretical pI: Translated: 9.55; Mature: 9.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHPTTPVAAVALALACAACASGAAKQKEPLRLELAVRAAPTVNPDDRSRPAPIVVSVYEL
CCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCEEEEEEEE
KTDGAFNAADFFTLQGPDKTVLADDLLARERFQLRPGERRVIRRDADPAAGTLGVVAAYR
ECCCCCCCCEEEEECCCCCEEHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHH
DLPNSVWRAAYPLPPARDAAWYRFSSPKLKLTIELDTHAIRITEPGK
HCCHHHHHHCCCCCCCCCCEEEEECCCCEEEEEEECCEEEEEECCCC
>Mature Secondary Structure
MHPTTPVAAVALALACAACASGAAKQKEPLRLELAVRAAPTVNPDDRSRPAPIVVSVYEL
CCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCEEEEEEEE
KTDGAFNAADFFTLQGPDKTVLADDLLARERFQLRPGERRVIRRDADPAAGTLGVVAAYR
ECCCCCCCCEEEEECCCCCEEHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHH
DLPNSVWRAAYPLPPARDAAWYRFSSPKLKLTIELDTHAIRITEPGK
HCCHHHHHHCCCCCCCCCCEEEEECCCCEEEEEEECCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA