Definition | Burkholderia mallei NCTC 10247 chromosome II, complete genome. |
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Accession | NC_009079 |
Length | 2,352,693 |
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The map label for this gene is cioB [H]
Identifier: 126446875
GI number: 126446875
Start: 2034621
End: 2035628
Strand: Direct
Name: cioB [H]
Synonym: BMA10247_A2101
Alternate gene names: 126446875
Gene position: 2034621-2035628 (Clockwise)
Preceding gene: 126447665
Following gene: 126447687
Centisome position: 86.48
GC content: 66.67
Gene sequence:
>1008_bases ATGGATGTCACCGTAATCTGGGCCGCGATCATCGCACTCGGCCTGTTCATGTACGTCGTGCTCGACGGCTTCGACCTGGG CATCGGCATCGTGTTTCCGTTCTTTCCCGCCGAACAGGAACGGGACCTGATGATGAACACCGTCGCGCCCGTGTGGGACG GCAACGAGACGTGGCTCGTGCTCGGCGGCGCGGGGCTCTTCGCGGTGTTTCCGATCGTCTACTCGACCGTGCTCTCGGCG CTGTATCTGCCGCTCGTGTTCATGCTCGTGTGCCTGATCTTTCGCGGCGTGTCGTTCGAGATCCGCGCGAAGGCGCGCCG CACCAAGCACCTGTGGGATCTCGCGTTCATCGGCGGCTCGACGGGCGCGACGTTCTTCCAGGGCGTCGCGCTCGGCGCGT TCCTGCAGGGCATTCCCGTCGACGGCGGCCGCTTCGCGAGCGACGCATTCGGCTGGCTCACGCCGTTCAGCCTGCTCACG GGCCTGGGGCTCATCGCGACCTACGCGCTGCTCGGCTGCTGCTGGCTCGTCGCGAAAACGGAAGGCGACCTGCAACGGCG GCTGCATCGCGTCGTGTGGCCGCTCACCGTCGTGCTGCTCGGCTTCATCGCGGTGGTGAGCCTCTGGACGCCGCTGCAGG ACACGAACATCGCGCAGCGCTGGTTCGCCACGGGGCTGTTCTGGCGGCTGTTGCCGGTGCCGTTCCTCGTCGCCGGCTGC GCGGTGCTGATGCGCCGCGCGGTGCGCGAGCGCCACGACACGACGCCGTTCGCGCTCGCGCTCGCGCTCGTGTTCCTCGG CTACGTCGGGCTGCTCGCGAGCCTGTGGCCGTATGCGATTCCGCAGAGCGTGACGCTGTGGGAAGCCGCCGCGCCGCGTT CGAGCCAGACGTTCACGCTGATCGGCGCGGCCGTCATCATTCCGGTCATCCTCGCGTACACGACGATGGGTTATTGGGTA TTCCGTGGAAAGGTGCGTCATGAAGACCAGCATTACTACCACCACTGA
Upstream 100 bases:
>100_bases CGCGGCCCGAGCGCACCGCCCGGCGCCCGCTGTCGGCCGCGAACCAGTTGATCGACGCCGCGTGAAGCCGGCGCGCCACC AAGCCAAGCGAGGTTAGCAA
Downstream 100 bases:
>100_bases GCCGCGCGCCGTCGCGCGCGGCGCGCGGCTGCCGGGCTGGATGTGGTTCGCGCTGCTGTGGATGGGCGGCGTCGCGGGCG CGGTGACGCTCGGTTACGCG
Product: cyanide-insensitive terminal oxidase
Products: Ubiquinone-8; H2O. [C]
Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]
Number of amino acids: Translated: 335; Mature: 335
Protein sequence:
>335_residues MDVTVIWAAIIALGLFMYVVLDGFDLGIGIVFPFFPAEQERDLMMNTVAPVWDGNETWLVLGGAGLFAVFPIVYSTVLSA LYLPLVFMLVCLIFRGVSFEIRAKARRTKHLWDLAFIGGSTGATFFQGVALGAFLQGIPVDGGRFASDAFGWLTPFSLLT GLGLIATYALLGCCWLVAKTEGDLQRRLHRVVWPLTVVLLGFIAVVSLWTPLQDTNIAQRWFATGLFWRLLPVPFLVAGC AVLMRRAVRERHDTTPFALALALVFLGYVGLLASLWPYAIPQSVTLWEAAAPRSSQTFTLIGAAVIIPVILAYTTMGYWV FRGKVRHEDQHYYHH
Sequences:
>Translated_335_residues MDVTVIWAAIIALGLFMYVVLDGFDLGIGIVFPFFPAEQERDLMMNTVAPVWDGNETWLVLGGAGLFAVFPIVYSTVLSA LYLPLVFMLVCLIFRGVSFEIRAKARRTKHLWDLAFIGGSTGATFFQGVALGAFLQGIPVDGGRFASDAFGWLTPFSLLT GLGLIATYALLGCCWLVAKTEGDLQRRLHRVVWPLTVVLLGFIAVVSLWTPLQDTNIAQRWFATGLFWRLLPVPFLVAGC AVLMRRAVRERHDTTPFALALALVFLGYVGLLASLWPYAIPQSVTLWEAAAPRSSQTFTLIGAAVIIPVILAYTTMGYWV FRGKVRHEDQHYYHH >Mature_335_residues MDVTVIWAAIIALGLFMYVVLDGFDLGIGIVFPFFPAEQERDLMMNTVAPVWDGNETWLVLGGAGLFAVFPIVYSTVLSA LYLPLVFMLVCLIFRGVSFEIRAKARRTKHLWDLAFIGGSTGATFFQGVALGAFLQGIPVDGGRFASDAFGWLTPFSLLT GLGLIATYALLGCCWLVAKTEGDLQRRLHRVVWPLTVVLLGFIAVVSLWTPLQDTNIAQRWFATGLFWRLLPVPFLVAGC AVLMRRAVRERHDTTPFALALALVFLGYVGLLASLWPYAIPQSVTLWEAAAPRSSQTFTLIGAAVIIPVILAYTTMGYWV FRGKVRHEDQHYYHH
Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]
COG id: COG1294
COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: To E.coli AppB [H]
Homologues:
Organism=Escherichia coli, GI1786954, Length=372, Percent_Identity=27.4193548387097, Blast_Score=140, Evalue=2e-34, Organism=Escherichia coli, GI1787213, Length=369, Percent_Identity=27.9132791327913, Blast_Score=119, Evalue=3e-28,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003317 [H]
Pfam domain/function: PF02322 Cyto_ox_2 [H]
EC number: 1.10.3.- [C]
Molecular weight: Translated: 37120; Mature: 37120
Theoretical pI: Translated: 8.32; Mature: 8.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDVTVIWAAIIALGLFMYVVLDGFDLGIGIVFPFFPAEQERDLMMNTVAPVWDGNETWLV CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCHHHHHHHHCCCCCCCCCEEEE LGGAGLFAVFPIVYSTVLSALYLPLVFMLVCLIFRGVSFEIRAKARRTKHLWDLAFIGGS EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHEECCC TGATFFQGVALGAFLQGIPVDGGRFASDAFGWLTPFSLLTGLGLIATYALLGCCWLVAKT CCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC EGDLQRRLHRVVWPLTVVLLGFIAVVSLWTPLQDTNIAQRWFATGLFWRLLPVPFLVAGC CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH AVLMRRAVRERHDTTPFALALALVFLGYVGLLASLWPYAIPQSVTLWEAAAPRSSQTFTL HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCHHHH IGAAVIIPVILAYTTMGYWVFRGKVRHEDQHYYHH HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC >Mature Secondary Structure MDVTVIWAAIIALGLFMYVVLDGFDLGIGIVFPFFPAEQERDLMMNTVAPVWDGNETWLV CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCHHHHHHHHCCCCCCCCCEEEE LGGAGLFAVFPIVYSTVLSALYLPLVFMLVCLIFRGVSFEIRAKARRTKHLWDLAFIGGS EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHEECCC TGATFFQGVALGAFLQGIPVDGGRFASDAFGWLTPFSLLTGLGLIATYALLGCCWLVAKT CCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC EGDLQRRLHRVVWPLTVVLLGFIAVVSLWTPLQDTNIAQRWFATGLFWRLLPVPFLVAGC CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH AVLMRRAVRERHDTTPFALALALVFLGYVGLLASLWPYAIPQSVTLWEAAAPRSSQTFTL HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCHHHH IGAAVIIPVILAYTTMGYWVFRGKVRHEDQHYYHH HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Ubiquinol-8; O(2) [C]
Specific reaction: Ubiquinol-8 + O(2) = Ubiquinone-8 + H2O. [C]
General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]