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The map label for this gene is ydcN [C]

Identifier: 126446842

GI number: 126446842

Start: 1660783

End: 1661526

Strand: Direct

Name: ydcN [C]

Synonym: BMA10247_A1732

Alternate gene names: 126446842

Gene position: 1660783-1661526 (Clockwise)

Preceding gene: 126447500

Following gene: 126446535

Centisome position: 70.59

GC content: 67.74

Gene sequence:

>744_bases
ATGGATTCGGACATCATGCATATCGGCGGGCGCATCCGCCGCCTGCGCCGAGAGCTGAAAAAGACACTGCTCGAAGTCGC
CACCGAGGCAAACCTGTCGGTCGGATTCCTGTCGCAAGTCGAGCGCAACCTGACCGGCATTTCGATTTCCTCGCTCGTGA
ACGTCGCCAAAGCGCTGCGCGCGCCGCTCAGCGCGCTCATCGACCAGCCCCGCCAGGATCAGCCGGATTCGCACGAAGGC
AGCCGCGAATCGTACGCGATCCGTCCGACGCAGCAGCGCTACGAGCGTCTGTCGACGACCTTCGCGGGCAGCCTGCTCAA
CGCGGTCAAGGTATCGATGATGGAAGGCTATTCGTCCGAATGGGTCGCGCACGCCGGCGACGAATTCGTGTTCGTGCTGT
CCGGGCACGTGCGCTACACGGTCGGCAAGCAGGACTACCCGCTCGGCCCCGGCGATTCGCTGCACTTCGATGCGCACGAG
CGGCATCGCGTCGTGAACGTGGGCCACGGGCCCGTCGAGCTGATCGCGGTCGGCACGCTGCCGCTCTTCGGCGACGGACA
GCCCGCCTTTCCGTCGCTGCCGGGCGAGCGCAAGCCGCCGCGCACGCGCGCGGCGCGCAAGCGCATCGAGCCGCCGCCGA
CGCCTTCGGCGCAACAAGATGCGCGGCATGACGAAGCGGCCGCGCCCAACGCGGTCACGACGCACGACGGCGCACCGCGC
GCCGCGAAAAAGAACACGCGCTGA

Upstream 100 bases:

>100_bases
CATCATCGCCGCGCCGCGCCCGCGCAATGGGCGCGGCCGACGCAATCGCGGGCGCCGCGCGCCTTGCGTCGAACGGCAAC
CGTAGCCTCGTGGGAGATTC

Downstream 100 bases:

>100_bases
ACGCCGCGCGCGCGATGCCCGCGCGCCGCCCTGCATCACGCGGCGCCGCCCGCCGGCATCCGCTGCGCAGCGGCGCGCAT
GCATCGCGTGACGCACGCGC

Product: DNA-binding protein

Products: NA

Alternate protein names: Transcriptional Regulator; Transcriptional Regulator XRE Family With Cupin Sensor; Cupin Domain Protein; Cupin 2 Domain-Containing Protein; Transcriptional Regulator XRE Family; Transcriptional Regulator MerR Family; Cupin 2 Conserved Barrel Domain-Containing Protein; MerR Family Transcriptional Regulator; Transcriptional Regulator Cro/CI Family; Helix-Turn-Helix Protein; Cupin 2 Conserved Barrel Domain Protein

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MDSDIMHIGGRIRRLRRELKKTLLEVATEANLSVGFLSQVERNLTGISISSLVNVAKALRAPLSALIDQPRQDQPDSHEG
SRESYAIRPTQQRYERLSTTFAGSLLNAVKVSMMEGYSSEWVAHAGDEFVFVLSGHVRYTVGKQDYPLGPGDSLHFDAHE
RHRVVNVGHGPVELIAVGTLPLFGDGQPAFPSLPGERKPPRTRAARKRIEPPPTPSAQQDARHDEAAAPNAVTTHDGAPR
AAKKNTR

Sequences:

>Translated_247_residues
MDSDIMHIGGRIRRLRRELKKTLLEVATEANLSVGFLSQVERNLTGISISSLVNVAKALRAPLSALIDQPRQDQPDSHEG
SRESYAIRPTQQRYERLSTTFAGSLLNAVKVSMMEGYSSEWVAHAGDEFVFVLSGHVRYTVGKQDYPLGPGDSLHFDAHE
RHRVVNVGHGPVELIAVGTLPLFGDGQPAFPSLPGERKPPRTRAARKRIEPPPTPSAQQDARHDEAAAPNAVTTHDGAPR
AAKKNTR
>Mature_247_residues
MDSDIMHIGGRIRRLRRELKKTLLEVATEANLSVGFLSQVERNLTGISISSLVNVAKALRAPLSALIDQPRQDQPDSHEG
SRESYAIRPTQQRYERLSTTFAGSLLNAVKVSMMEGYSSEWVAHAGDEFVFVLSGHVRYTVGKQDYPLGPGDSLHFDAHE
RHRVVNVGHGPVELIAVGTLPLFGDGQPAFPSLPGERKPPRTRAARKRIEPPPTPSAQQDARHDEAAAPNAVTTHDGAPR
AAKKNTR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27060; Mature: 27060

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSDIMHIGGRIRRLRRELKKTLLEVATEANLSVGFLSQVERNLTGISISSLVNVAKALR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHH
APLSALIDQPRQDQPDSHEGSRESYAIRPTQQRYERLSTTFAGSLLNAVKVSMMEGYSSE
HHHHHHHCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
WVAHAGDEFVFVLSGHVRYTVGKQDYPLGPGDSLHFDAHERHRVVNVGHGPVELIAVGTL
HHHCCCCCEEEEEECCEEEEECCCCCCCCCCCCEEECCCCCCEEEECCCCCEEEEEEECC
PLFGDGQPAFPSLPGERKPPRTRAARKRIEPPPTPSAQQDARHDEAAAPNAVTTHDGAPR
CEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHCCHHHCCCCCEECCCCCCC
AAKKNTR
CCCCCCC
>Mature Secondary Structure
MDSDIMHIGGRIRRLRRELKKTLLEVATEANLSVGFLSQVERNLTGISISSLVNVAKALR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHH
APLSALIDQPRQDQPDSHEGSRESYAIRPTQQRYERLSTTFAGSLLNAVKVSMMEGYSSE
HHHHHHHCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
WVAHAGDEFVFVLSGHVRYTVGKQDYPLGPGDSLHFDAHERHRVVNVGHGPVELIAVGTL
HHHCCCCCEEEEEECCEEEEECCCCCCCCCCCCEEECCCCCCEEEECCCCCEEEEEEECC
PLFGDGQPAFPSLPGERKPPRTRAARKRIEPPPTPSAQQDARHDEAAAPNAVTTHDGAPR
CEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHCCHHHCCCCCEECCCCCCC
AAKKNTR
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA