Definition | Burkholderia mallei NCTC 10247 chromosome II, complete genome. |
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Accession | NC_009079 |
Length | 2,352,693 |
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The map label for this gene is ynfJ [C]
Identifier: 126446720
GI number: 126446720
Start: 1115150
End: 1117054
Strand: Reverse
Name: ynfJ [C]
Synonym: BMA10247_A1138
Alternate gene names: 126446720
Gene position: 1117054-1115150 (Counterclockwise)
Preceding gene: 126445593
Following gene: 126447224
Centisome position: 47.48
GC content: 71.65
Gene sequence:
>1905_bases ATGAGCATCGCCGCCCCACACAAACGCGATTTCGCGTCGAACGCGCGACTGCCGCGCATCGCCCTCCTCGCGCTCGCGAT CGGCGTGCTCAGCACGTTCGCCGCGTTCGCGCTGCTGAGCCTCATCCATCTGTTCACGAACCTGTTCTTCTTCCAGCGGT TCTCGTTCGCCGAGCACTCGCCCGCGCTGAACACGCTCGGGCCGTGGGCGGCCGCGGTGCCCGTCGCGGGCGGCATCGTC GTCGGGCTGATCGCGCGCTTCGGCTCCGAGAAGATCCGCGGCCACGGCATTCCCGAGGCGATCGAGGCGATCCTGTTCGG CAAGAGCCGGATGTCGCCGAAGGTCGCCGTATTGAAGCCGCTCGCGTCGGGCATCGTGATCGGCAGCGGCGGGCCGTTCG GCGCCGAAGGGCCGATCATCATGACGGGCGGCGCGATCGGCTCGCTGATCGCGCAGTTCGTGAAGGTGACGGCGGCCGAG CGCAAGACGCTGCTCGTCGCGGGCGCGACGGCCGGGATGACCGCGGTGTTCGGCACGCCGGTGGCCGCCGTGCTGCTCGC CGTCGAACTGCTGCTGTTCGAATGGCGGCCGCGCAGCTTCCTGCCGGTCGCGCTCGCGTGCGCGGTCGCGGGCTTCGCGC GCGCCGCGTTCTTCGGCGTCGGCCCGCTGTTTCCGGTCGAGACCGCGGCTCCGACGGCCGCCGCGCTCGGCTCGTGCGCG CTGGCGGGGCTCCTGTCGGGCGCGCTCGCGTGCGGGCTGTCGGTCTCGCTCTACAAGATCGAGGACCGGTTCGGCAAGCT GCCGGTTCACTGGATGTGGTGGCCCGCGATCGGCGGCCTCGCGGTCGGGATCGGCGGGCTCATCGAGCCGCGCGCGCTCG GCGTCGGCTACGACGTGATCGGCGATCTGCTGCACGGCCATATCGCGCTGCAGATCGCGCTCGCGATTCTCGTCGTCAAG GCGGTGATCTGGGTGATCGCGCTCGGCTCGGGCACCTCGGGCGGCGTGCTCGCGCCGCTGCTGATGCTGGGCGCGGGGCT CGGCACGCTGCTCGGGCCCGTGCTGCCGGGCGGCGAGCCCGCGCTGTGGCCGCTCGTGTGCATGGCCGCGACGCTCGGCG CCACGCTCGGCGCGCCGCTCACCGCGATCGTGTTCGCATTCGGCCTCACGCACGACGCGAACGCGCTGCTGCCGCTGCTC ACCGCGACGCTCGTCGCGCACGGCTTCGCGACTGTCGCGATGAAGCGCTCGATCATGACCGAGAAAATCGCGCGGCGCGG CTATCACATCTATCGCGAATACGGCGTCGATCCGCTCGAGCGCCATTACGTCGACGAAGTAATGACGCGCAGCGCGGTGA CGATCGACGCGGACCTGAGCGTCGAGGTCGTGCGCGCGCGCTACTTCGGCGCGACGCAGGCGCACCGCGCGTATCCGGTC GTGCGCGACGGCGTGCTGATCGGCATGCTCGATCGCGCGACGCTCGACGGGAGCCCCGCCGCGCACGACGGCGACGGGCA GGCCGACGACGCGCGAGCGGCGAAGGACGGGCAGGCCGACGACGCACGAGCGGCGAAGATGCGAGCGGCCGACGTGCAGA TGATCGACATGCGGGTGGCCGACATGCGGGTGGCCGACGTGCTGCCGCGCCGCGCCCCGCTCTTCTCGCTCGCCGACGAA ACGTGCCGCCTCGTCGCGACGCGGCTCGCCGTGCACCAGCTCGAACGCCTGCCGGTCGTCGCCGATCCGGACACGATGCG CGTCGTCGGCATCGTGTCGCGCAGCGATCTCGTGAAGCCGGCGCTGCGCCACTTCGACGACGAGCACAAACGCGAACGCT TCCGTCGCGCGCATCCCGCCGCGTTCGTCAAGCGCCGCTTCGCACCGGCGCGCAAGACGGGCTGA
Upstream 100 bases:
>100_bases GAGCTGCACCGCGCCGAGCTGAAATCGCTGCGCGGCGCATTCCAGGTGCCGCAGATCGATTACTGAACCGATAAGACCAC GAACGCTTGCCCCCGACATC
Downstream 100 bases:
>100_bases GCGGCGCGGCGGCGCGGCGGCGGCCGCGCGCGAGGCCGCGCGAGACTGATTCACGCGTCGCCTCGTCCGGCGCGCGCCGC GCTCGGCATGCCCGGCGGGC
Product: chloride channel (ClC) family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 634; Mature: 633
Protein sequence:
>634_residues MSIAAPHKRDFASNARLPRIALLALAIGVLSTFAAFALLSLIHLFTNLFFFQRFSFAEHSPALNTLGPWAAAVPVAGGIV VGLIARFGSEKIRGHGIPEAIEAILFGKSRMSPKVAVLKPLASGIVIGSGGPFGAEGPIIMTGGAIGSLIAQFVKVTAAE RKTLLVAGATAGMTAVFGTPVAAVLLAVELLLFEWRPRSFLPVALACAVAGFARAAFFGVGPLFPVETAAPTAAALGSCA LAGLLSGALACGLSVSLYKIEDRFGKLPVHWMWWPAIGGLAVGIGGLIEPRALGVGYDVIGDLLHGHIALQIALAILVVK AVIWVIALGSGTSGGVLAPLLMLGAGLGTLLGPVLPGGEPALWPLVCMAATLGATLGAPLTAIVFAFGLTHDANALLPLL TATLVAHGFATVAMKRSIMTEKIARRGYHIYREYGVDPLERHYVDEVMTRSAVTIDADLSVEVVRARYFGATQAHRAYPV VRDGVLIGMLDRATLDGSPAAHDGDGQADDARAAKDGQADDARAAKMRAADVQMIDMRVADMRVADVLPRRAPLFSLADE TCRLVATRLAVHQLERLPVVADPDTMRVVGIVSRSDLVKPALRHFDDEHKRERFRRAHPAAFVKRRFAPARKTG
Sequences:
>Translated_634_residues MSIAAPHKRDFASNARLPRIALLALAIGVLSTFAAFALLSLIHLFTNLFFFQRFSFAEHSPALNTLGPWAAAVPVAGGIV VGLIARFGSEKIRGHGIPEAIEAILFGKSRMSPKVAVLKPLASGIVIGSGGPFGAEGPIIMTGGAIGSLIAQFVKVTAAE RKTLLVAGATAGMTAVFGTPVAAVLLAVELLLFEWRPRSFLPVALACAVAGFARAAFFGVGPLFPVETAAPTAAALGSCA LAGLLSGALACGLSVSLYKIEDRFGKLPVHWMWWPAIGGLAVGIGGLIEPRALGVGYDVIGDLLHGHIALQIALAILVVK AVIWVIALGSGTSGGVLAPLLMLGAGLGTLLGPVLPGGEPALWPLVCMAATLGATLGAPLTAIVFAFGLTHDANALLPLL TATLVAHGFATVAMKRSIMTEKIARRGYHIYREYGVDPLERHYVDEVMTRSAVTIDADLSVEVVRARYFGATQAHRAYPV VRDGVLIGMLDRATLDGSPAAHDGDGQADDARAAKDGQADDARAAKMRAADVQMIDMRVADMRVADVLPRRAPLFSLADE TCRLVATRLAVHQLERLPVVADPDTMRVVGIVSRSDLVKPALRHFDDEHKRERFRRAHPAAFVKRRFAPARKTG >Mature_633_residues SIAAPHKRDFASNARLPRIALLALAIGVLSTFAAFALLSLIHLFTNLFFFQRFSFAEHSPALNTLGPWAAAVPVAGGIVV GLIARFGSEKIRGHGIPEAIEAILFGKSRMSPKVAVLKPLASGIVIGSGGPFGAEGPIIMTGGAIGSLIAQFVKVTAAER KTLLVAGATAGMTAVFGTPVAAVLLAVELLLFEWRPRSFLPVALACAVAGFARAAFFGVGPLFPVETAAPTAAALGSCAL AGLLSGALACGLSVSLYKIEDRFGKLPVHWMWWPAIGGLAVGIGGLIEPRALGVGYDVIGDLLHGHIALQIALAILVVKA VIWVIALGSGTSGGVLAPLLMLGAGLGTLLGPVLPGGEPALWPLVCMAATLGATLGAPLTAIVFAFGLTHDANALLPLLT ATLVAHGFATVAMKRSIMTEKIARRGYHIYREYGVDPLERHYVDEVMTRSAVTIDADLSVEVVRARYFGATQAHRAYPVV RDGVLIGMLDRATLDGSPAAHDGDGQADDARAAKDGQADDARAAKMRAADVQMIDMRVADMRVADVLPRRAPLFSLADET CRLVATRLAVHQLERLPVVADPDTMRVVGIVSRSDLVKPALRHFDDEHKRERFRRAHPAAFVKRRFAPARKTG
Specific function: Unknown
COG id: COG0038
COG function: function code P; Chloride channel protein EriC
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the chloride channel (TC 2.A.49) family. ClcB subfamily [H]
Homologues:
Organism=Escherichia coli, GI87081943, Length=426, Percent_Identity=29.5774647887324, Blast_Score=67, Evalue=3e-12, Organism=Escherichia coli, GI1786350, Length=316, Percent_Identity=26.5822784810127, Blast_Score=64, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014743 - InterPro: IPR001807 [H]
Pfam domain/function: PF00654 Voltage_CLC [H]
EC number: NA
Molecular weight: Translated: 66660; Mature: 66529
Theoretical pI: Translated: 10.01; Mature: 10.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIAAPHKRDFASNARLPRIALLALAIGVLSTFAAFALLSLIHLFTNLFFFQRFSFAEHS CCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PALNTLGPWAAAVPVAGGIVVGLIARFGSEKIRGHGIPEAIEAILFGKSRMSPKVAVLKP CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHCCCCCHHHHHHHHHCCCCCCCHHHHHHH LASGIVIGSGGPFGAEGPIIMTGGAIGSLIAQFVKVTAAERKTLLVAGATAGMTAVFGTP HHCCEEEECCCCCCCCCCEEEECCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHCCH VAAVLLAVELLLFEWRPRSFLPVALACAVAGFARAAFFGVGPLFPVETAAPTAAALGSCA HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH LAGLLSGALACGLSVSLYKIEDRFGKLPVHWMWWPAIGGLAVGIGGLIEPRALGVGYDVI HHHHHHHHHHHCCCEEEEEEHHHHCCCCEEEEEHHHHHHHHHHHCCCCCCHHHCCCHHHH GDLLHGHIALQIALAILVVKAVIWVIALGSGTSGGVLAPLLMLGAGLGTLLGPVLPGGEP HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHCCCCCCCC ALWPLVCMAATLGATLGAPLTAIVFAFGLTHDANALLPLLTATLVAHGFATVAMKRSIMT HHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH EKIARRGYHIYREYGVDPLERHYVDEVMTRSAVTIDADLSVEVVRARYFGATQAHRAYPV HHHHHCCHHHHHHHCCCHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHCCCHHHHCCCH VRDGVLIGMLDRATLDGSPAAHDGDGQADDARAAKDGQADDARAAKMRAADVQMIDMRVA HHCCEEEEEEHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH DMRVADVLPRRAPLFSLADETCRLVATRLAVHQLERLPVVADPDTMRVVGIVSRSDLVKP HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCEEEEEEECHHHHHHH ALRHFDDEHKRERFRRAHPAAFVKRRFAPARKTG HHHHCCHHHHHHHHHHHCHHHHHHHHCCCCCCCC >Mature Secondary Structure SIAAPHKRDFASNARLPRIALLALAIGVLSTFAAFALLSLIHLFTNLFFFQRFSFAEHS CCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PALNTLGPWAAAVPVAGGIVVGLIARFGSEKIRGHGIPEAIEAILFGKSRMSPKVAVLKP CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHCCCCCHHHHHHHHHCCCCCCCHHHHHHH LASGIVIGSGGPFGAEGPIIMTGGAIGSLIAQFVKVTAAERKTLLVAGATAGMTAVFGTP HHCCEEEECCCCCCCCCCEEEECCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHCCH VAAVLLAVELLLFEWRPRSFLPVALACAVAGFARAAFFGVGPLFPVETAAPTAAALGSCA HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH LAGLLSGALACGLSVSLYKIEDRFGKLPVHWMWWPAIGGLAVGIGGLIEPRALGVGYDVI HHHHHHHHHHHCCCEEEEEEHHHHCCCCEEEEEHHHHHHHHHHHCCCCCCHHHCCCHHHH GDLLHGHIALQIALAILVVKAVIWVIALGSGTSGGVLAPLLMLGAGLGTLLGPVLPGGEP HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHCCCCCCCC ALWPLVCMAATLGATLGAPLTAIVFAFGLTHDANALLPLLTATLVAHGFATVAMKRSIMT HHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH EKIARRGYHIYREYGVDPLERHYVDEVMTRSAVTIDADLSVEVVRARYFGATQAHRAYPV HHHHHCCHHHHHHHCCCHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHCCCHHHHCCCH VRDGVLIGMLDRATLDGSPAAHDGDGQADDARAAKDGQADDARAAKMRAADVQMIDMRVA HHCCEEEEEEHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH DMRVADVLPRRAPLFSLADETCRLVATRLAVHQLERLPVVADPDTMRVVGIVSRSDLVKP HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCEEEEEEECHHHHHHH ALRHFDDEHKRERFRRAHPAAFVKRRFAPARKTG HHHHCCHHHHHHHHHHHCHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11823852 [H]