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The map label for this gene is vanR [H]

Identifier: 126446264

GI number: 126446264

Start: 809055

End: 809771

Strand: Direct

Name: vanR [H]

Synonym: BMA10247_A0854

Alternate gene names: 126446264

Gene position: 809055-809771 (Clockwise)

Preceding gene: 126447478

Following gene: 126446455

Centisome position: 34.39

GC content: 63.18

Gene sequence:

>717_bases
ATGTTCGAAGGCTTGTCCATTGGTTCGTTTAACGAAATTCTGAACGCGACTTGCAAGAAGAGCCTCTTTGAGCAGACGGC
GTATCACGTTCGCCAACTGGGCTTCAAGAATTTCGCGTACCGGCATCAGATCTCCGGCGCGGCGTCGAGCCGCTGCATGC
TCGACGGATTTCCGGCCGAGTGGCGGCTGCGCTACGACGCCGCCGACTACCTGTCGATCGATCCCGTCGTTCAGCATTGC
CGGTGCCGGACCGTGCCGCTCATCTGGCACGACGATCTCTATACGACCAGCCGCGCGAAGCTCATGCGCGACGAGGCGAA
ATCGTACGGCCTCGTCTACGGGCTCAGTTGCCCCGTTCACGATCGCAGCGGCGCGATCAGCATGCTCAGCATGGCGACCG
ACGATCCGTTCGAGCACGACGCGAGCGACATACTGCGGCTGCTGAGCCTGTCGCAGTTGCTCGCGAGCTTCGTGCACGCG
GCGATGCACGAGCTGCTCGATTGCCGGCTCAGACGGCAGGGCTCGTGCGATCTGACCGCGCGCGAGCGCGAATCGCTGCA
GTGGGCGGGGCGCGGCAAGACGGCGTGGGAAATCTCGAAGATTCTCGGCATCTCGGAGCGCACGGTCGTGTTTCATCTGT
CGAACGCCGCACGCAAGATAGGCGCGAACAACCGCGCGCAGGCGGTCGTCATCGCATCGGCGCGCGGGTTGATCTGA

Upstream 100 bases:

>100_bases
TTTCGCCGCGCGCGGGCCGCCGTTGCCCTCTCGCCCCTTTCGAGCACGCTTTCTTCATTGGTTCGCTAACGTAACTTCCT
CACTTGAGCTGGGCGGTTCT

Downstream 100 bases:

>100_bases
GCGCGCGCCGCCGCCGCGCGCAAGCGGTTGCGCGCGACCGCGCGGCGACCCGCCTGTGCGGCGGGCGCGGAACGCAGGTC
GCGCGGCTATCGCGCCGGCG

Product: ATP-dependent transcription regulator LuxR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MFEGLSIGSFNEILNATCKKSLFEQTAYHVRQLGFKNFAYRHQISGAASSRCMLDGFPAEWRLRYDAADYLSIDPVVQHC
RCRTVPLIWHDDLYTTSRAKLMRDEAKSYGLVYGLSCPVHDRSGAISMLSMATDDPFEHDASDILRLLSLSQLLASFVHA
AMHELLDCRLRRQGSCDLTARERESLQWAGRGKTAWEISKILGISERTVVFHLSNAARKIGANNRAQAVVIASARGLI

Sequences:

>Translated_238_residues
MFEGLSIGSFNEILNATCKKSLFEQTAYHVRQLGFKNFAYRHQISGAASSRCMLDGFPAEWRLRYDAADYLSIDPVVQHC
RCRTVPLIWHDDLYTTSRAKLMRDEAKSYGLVYGLSCPVHDRSGAISMLSMATDDPFEHDASDILRLLSLSQLLASFVHA
AMHELLDCRLRRQGSCDLTARERESLQWAGRGKTAWEISKILGISERTVVFHLSNAARKIGANNRAQAVVIASARGLI
>Mature_238_residues
MFEGLSIGSFNEILNATCKKSLFEQTAYHVRQLGFKNFAYRHQISGAASSRCMLDGFPAEWRLRYDAADYLSIDPVVQHC
RCRTVPLIWHDDLYTTSRAKLMRDEAKSYGLVYGLSCPVHDRSGAISMLSMATDDPFEHDASDILRLLSLSQLLASFVHA
AMHELLDCRLRRQGSCDLTARERESLQWAGRGKTAWEISKILGISERTVVFHLSNAARKIGANNRAQAVVIASARGLI

Specific function: Probable transcriptional activator. Binds to autoinducer molecule ODHL [H]

COG id: COG2771

COG function: function code K; DNA-binding HTH domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788224, Length=225, Percent_Identity=30.6666666666667, Blast_Score=94, Evalue=9e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016032
- InterPro:   IPR005143
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03472 Autoind_bind; PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 26682; Mature: 26682

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFEGLSIGSFNEILNATCKKSLFEQTAYHVRQLGFKNFAYRHQISGAASSRCMLDGFPAE
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCC
WRLRYDAADYLSIDPVVQHCRCRTVPLIWHDDLYTTSRAKLMRDEAKSYGLVYGLSCPVH
EEEEECCCCCCCHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHHHCCEEEECCCCCC
DRSGAISMLSMATDDPFEHDASDILRLLSLSQLLASFVHAAMHELLDCRLRRQGSCDLTA
CCCCCCCEEHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
RERESLQWAGRGKTAWEISKILGISERTVVFHLSNAARKIGANNRAQAVVIASARGLI
HHHHHHHHCCCCCHHHHHHHHHCCCCCEEEEEECHHHHHHCCCCCCCEEEEECCCCCC
>Mature Secondary Structure
MFEGLSIGSFNEILNATCKKSLFEQTAYHVRQLGFKNFAYRHQISGAASSRCMLDGFPAE
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCC
WRLRYDAADYLSIDPVVQHCRCRTVPLIWHDDLYTTSRAKLMRDEAKSYGLVYGLSCPVH
EEEEECCCCCCCHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHHHCCEEEECCCCCC
DRSGAISMLSMATDDPFEHDASDILRLLSLSQLLASFVHAAMHELLDCRLRRQGSCDLTA
CCCCCCCEEHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
RERESLQWAGRGKTAWEISKILGISERTVVFHLSNAARKIGANNRAQAVVIASARGLI
HHHHHHHHCCCCCHHHHHHHHHCCCCCEEEEEECHHHHHHCCCCCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9139920 [H]