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The map label for this gene is rbsC [H]

Identifier: 126446119

GI number: 126446119

Start: 2008807

End: 2009646

Strand: Reverse

Name: rbsC [H]

Synonym: BMA10247_A2075

Alternate gene names: 126446119

Gene position: 2009646-2008807 (Counterclockwise)

Preceding gene: 126446637

Following gene: 126447749

Centisome position: 85.42

GC content: 69.52

Gene sequence:

>840_bases
GTGAACGTCGCGGAGCTCGCGAGCCGCTTCGGCATCCCGATCGTCTTCGTCGCGCTGTGCGTCGTGCTCGCGTTCGCGAG
CCCGTACTTCCTCACCTGGCGCAACTGGAGCGACATCCTGCGCCAGACGTCGATCAACGGCATTCTCGCGATCGGCATGA
CGTACGTGATCCTGACCAAGGGCATCGACCTGTCGGTGGGCTCGGTGCTCGCGCTCGCGGGCATCGTGAGCGGCCTCGCC
GGCGCGGCGGGGCACGGGCTCGCGGTGTCGCTCGCGGCCGGCGTCGCGTGCGGCGCGGCGCTCGGCGCGATCAACGGCGT
GGCGATCGCGCGCTTGAACGTGCCGCCGTTCGTCGCGACGCTCGGCATGCTGAGCGTCGCGCGCGGCGTCACGTACATCG
CCAACGACGGCAGCCCGGTCGCGAACCTGCCCGACGATTACCTGTCGCTCGGCATCGGCAGGCTCGGCCCGCTCGGCATG
CCGGTGCTGATCTTCGCGGGCGTCGCGCTCGCGTGCTGGTGGGTGCTGCGCTACACGACATACGGCCGCTATCTGTATGC
GGTCGGCGGCAACGAGAAGAGTGCGCGCACGACGTCCGCGCTGCCGCAGGCGGGCGTGTCGTACGAGCTCGACGCGATCG
CGGCCGTCGTGATCGGCGGCACGAGCCTGTCGGGCGGGCAGGGCGGCGTCGTCGGCACGCTGTTCGGCGCGTTGTTGATC
GGCGTGATCAACAACGGGCTGAACCTGCTCGGCGTGTCGTCGTATTACCAGCAGATCGCGAAGGGACTCATCATCGTGCT
GGCCGTGCTCATCGACGTGGCCCGCAAACAGCAGCGCTGA

Upstream 100 bases:

>100_bases
CGGGCGACGGCGCCACCCAGGAATCCCTGCTCCATCTCGCTTCATGAACAAGACCATGAACACTCAGACCCTGTCCCGTC
TCGACGCGGCGCCCAGGCGC

Downstream 100 bases:

>100_bases
CGCAGCGCATTCCCACCCGGAGGAGACGACAATGCAAACACGAAAGACCTGGTTCGGCCGCTTCGCGGCCGCTTCGCGGC
CGCGGCGGCGCTCGGCGCGA

Product: carbohydrate ABC transporter permease

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 279

Protein sequence:

>279_residues
MNVAELASRFGIPIVFVALCVVLAFASPYFLTWRNWSDILRQTSINGILAIGMTYVILTKGIDLSVGSVLALAGIVSGLA
GAAGHGLAVSLAAGVACGAALGAINGVAIARLNVPPFVATLGMLSVARGVTYIANDGSPVANLPDDYLSLGIGRLGPLGM
PVLIFAGVALACWWVLRYTTYGRYLYAVGGNEKSARTTSALPQAGVSYELDAIAAVVIGGTSLSGGQGGVVGTLFGALLI
GVINNGLNLLGVSSYYQQIAKGLIIVLAVLIDVARKQQR

Sequences:

>Translated_279_residues
MNVAELASRFGIPIVFVALCVVLAFASPYFLTWRNWSDILRQTSINGILAIGMTYVILTKGIDLSVGSVLALAGIVSGLA
GAAGHGLAVSLAAGVACGAALGAINGVAIARLNVPPFVATLGMLSVARGVTYIANDGSPVANLPDDYLSLGIGRLGPLGM
PVLIFAGVALACWWVLRYTTYGRYLYAVGGNEKSARTTSALPQAGVSYELDAIAAVVIGGTSLSGGQGGVVGTLFGALLI
GVINNGLNLLGVSSYYQQIAKGLIIVLAVLIDVARKQQR
>Mature_279_residues
MNVAELASRFGIPIVFVALCVVLAFASPYFLTWRNWSDILRQTSINGILAIGMTYVILTKGIDLSVGSVLALAGIVSGLA
GAAGHGLAVSLAAGVACGAALGAINGVAIARLNVPPFVATLGMLSVARGVTYIANDGSPVANLPDDYLSLGIGRLGPLGM
PVLIFAGVALACWWVLRYTTYGRYLYAVGGNEKSARTTSALPQAGVSYELDAIAAVVIGGTSLSGGQGGVVGTLFGALLI
GVINNGLNLLGVSSYYQQIAKGLIIVLAVLIDVARKQQR

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=301, Percent_Identity=47.8405315614618, Blast_Score=209, Evalue=2e-55,
Organism=Escherichia coli, GI1790524, Length=305, Percent_Identity=33.7704918032787, Blast_Score=138, Evalue=4e-34,
Organism=Escherichia coli, GI145693152, Length=303, Percent_Identity=29.7029702970297, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI1788896, Length=309, Percent_Identity=33.6569579288026, Blast_Score=127, Evalue=6e-31,
Organism=Escherichia coli, GI87082395, Length=288, Percent_Identity=36.8055555555556, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI145693214, Length=253, Percent_Identity=34.3873517786561, Blast_Score=104, Evalue=7e-24,
Organism=Escherichia coli, GI1788471, Length=320, Percent_Identity=34.0625, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1787793, Length=262, Percent_Identity=31.2977099236641, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1789992, Length=131, Percent_Identity=36.6412213740458, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1787794, Length=278, Percent_Identity=29.136690647482, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 28522; Mature: 28522

Theoretical pI: Translated: 9.29; Mature: 9.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVAELASRFGIPIVFVALCVVLAFASPYFLTWRNWSDILRQTSINGILAIGMTYVILTK
CCHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCHHHHHHHHHHHHHC
GIDLSVGSVLALAGIVSGLAGAAGHGLAVSLAAGVACGAALGAINGVAIARLNVPPFVAT
CCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHH
LGMLSVARGVTYIANDGSPVANLPDDYLSLGIGRLGPLGMPVLIFAGVALACWWVLRYTT
HHHHHHHHCCEEEECCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
YGRYLYAVGGNEKSARTTSALPQAGVSYELDAIAAVVIGGTSLSGGQGGVVGTLFGALLI
HCCEEEEECCCCCCCHHHHHCCCCCCCEEHHHHHHHEECCCCCCCCCCCHHHHHHHHHHH
GVINNGLNLLGVSSYYQQIAKGLIIVLAVLIDVARKQQR
HHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNVAELASRFGIPIVFVALCVVLAFASPYFLTWRNWSDILRQTSINGILAIGMTYVILTK
CCHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCHHHHHHHHHHHHHC
GIDLSVGSVLALAGIVSGLAGAAGHGLAVSLAAGVACGAALGAINGVAIARLNVPPFVAT
CCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHH
LGMLSVARGVTYIANDGSPVANLPDDYLSLGIGRLGPLGMPVLIFAGVALACWWVLRYTT
HHHHHHHHCCEEEECCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
YGRYLYAVGGNEKSARTTSALPQAGVSYELDAIAAVVIGGTSLSGGQGGVVGTLFGALLI
HCCEEEEECCCCCCCHHHHHCCCCCCCEEHHHHHHHEECCCCCCCCCCCHHHHHHHHHHH
GVINNGLNLLGVSSYYQQIAKGLIIVLAVLIDVARKQQR
HHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]