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The map label for this gene is yhjC [H]

Identifier: 126445711

GI number: 126445711

Start: 1232784

End: 1233839

Strand: Reverse

Name: yhjC [H]

Synonym: BMA10247_A1270

Alternate gene names: 126445711

Gene position: 1233839-1232784 (Counterclockwise)

Preceding gene: 126446528

Following gene: 126447856

Centisome position: 52.44

GC content: 72.25

Gene sequence:

>1056_bases
ATGGACCGATTTCAGGAAATGCAGGTTTTCGTGCGGATCGCCGAGCGGCAGAGCTTCAGCCGGGCGTCGGACGATCTGCG
GATTCCGCGCGCGACCGTGACCAACCTGATGAAGCGCATGGAGGCGCGGCTCGGCGCGCGGCTGCTCGAACGGACGACGC
GCACCGTGTGCCTCACGCAGGACGGCGAAGCCTACTACCGGCGCTGCGTGCGGCTGATCGCCGATCTGGAGGAGGCCGAG
GGCGCGTTTCGCGCCGCGGCGCCGCGGGGGCTGCTGCGCGTGAACCTGCAGGGCACGCTCGCGCGCTATTTCGTCGTGCC
CGCGCTGCCGGATTTTCTCGCGCGCTATCCGGGGATCCGGCTGCACATCGGCGAGGACGACCGCTTCGTCGATCTGGTGC
GCGAGGGCGTCGATTGCGTGCTGCGCTCGGGCAACCTGCAGGATTCGTCGATGGTCGGGCGGCGGGTCGCGCAGCTCGAG
CAGGTGACGGTCGCGAGCCCCGGCTATCTCGCGCGGCACGGCGAGCCGGCCGAGCTCGCCGCGCTGGCCGCGCATCGCGC
GGTCGACTACGTGTCGAGCGCGACGGGCAAGCCGATGCCGCTCGAATTCACCGTCGACGGGCGCGTGACCGAGGTGCGGC
TCGACGCGGCGATTTCCGTCGCGGGCGTCGAGCTCTACACGGGCGCGGCCGTCGCGGGGCTCGGCATCGTGCAGGTGCCG
CGCTACCGGATCGCCGACGAACTGGCCGACGGACGCCTGAGGATCGTGCTCGGCGCGTATCCGCCGCCGCCGATGCCCGT
CAGCGTGCTGTATCCGCACAGCCGGCAGTTGTCGTCGCGCGTGCGGGCGTTCGCGCAGTGGCTGCGGGAGCGGTTCGACG
CGGCGCAGGCGGGGCGGGCGACGGCGCGTGCGGCGCGCCGGGCTCTTCGGGTTCCGCCGCGCGCGCGCCGTCGCCGGCTC
GGTCGGAACCGGCGAAAGCGTTGCTATCGCGGCGGCCGCGTCGCTAGATTCGTCTTCGTTGTCGCGAACACGCCCGATGC
GGGGGGCACGCGATGA

Upstream 100 bases:

>100_bases
TGGATGGGACGAATGATCGGCCATTCCATCGCAGAGATAATCATGATCAAATGGATATCATCATTCCATTTGCTTTAACG
ATCAGCCGAGGACCGACGCG

Downstream 100 bases:

>100_bases
AAACGATCGAACTGATCGGCGGGATGAGCTGGGAATCGTCGGCCGCATACTATCGGCCGATCAACCCGCGGAGGACGGCG
CGCCTCGGCGGGCATCGCAA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 351; Mature: 351

Protein sequence:

>351_residues
MDRFQEMQVFVRIAERQSFSRASDDLRIPRATVTNLMKRMEARLGARLLERTTRTVCLTQDGEAYYRRCVRLIADLEEAE
GAFRAAAPRGLLRVNLQGTLARYFVVPALPDFLARYPGIRLHIGEDDRFVDLVREGVDCVLRSGNLQDSSMVGRRVAQLE
QVTVASPGYLARHGEPAELAALAAHRAVDYVSSATGKPMPLEFTVDGRVTEVRLDAAISVAGVELYTGAAVAGLGIVQVP
RYRIADELADGRLRIVLGAYPPPPMPVSVLYPHSRQLSSRVRAFAQWLRERFDAAQAGRATARAARRALRVPPRARRRRL
GRNRRKRCYRGGRVARFVFVVANTPDAGGTR

Sequences:

>Translated_351_residues
MDRFQEMQVFVRIAERQSFSRASDDLRIPRATVTNLMKRMEARLGARLLERTTRTVCLTQDGEAYYRRCVRLIADLEEAE
GAFRAAAPRGLLRVNLQGTLARYFVVPALPDFLARYPGIRLHIGEDDRFVDLVREGVDCVLRSGNLQDSSMVGRRVAQLE
QVTVASPGYLARHGEPAELAALAAHRAVDYVSSATGKPMPLEFTVDGRVTEVRLDAAISVAGVELYTGAAVAGLGIVQVP
RYRIADELADGRLRIVLGAYPPPPMPVSVLYPHSRQLSSRVRAFAQWLRERFDAAQAGRATARAARRALRVPPRARRRRL
GRNRRKRCYRGGRVARFVFVVANTPDAGGTR
>Mature_351_residues
MDRFQEMQVFVRIAERQSFSRASDDLRIPRATVTNLMKRMEARLGARLLERTTRTVCLTQDGEAYYRRCVRLIADLEEAE
GAFRAAAPRGLLRVNLQGTLARYFVVPALPDFLARYPGIRLHIGEDDRFVDLVREGVDCVLRSGNLQDSSMVGRRVAQLE
QVTVASPGYLARHGEPAELAALAAHRAVDYVSSATGKPMPLEFTVDGRVTEVRLDAAISVAGVELYTGAAVAGLGIVQVP
RYRIADELADGRLRIVLGAYPPPPMPVSVLYPHSRQLSSRVRAFAQWLRERFDAAQAGRATARAARRALRVPPRARRRRL
GRNRRKRCYRGGRVARFVFVVANTPDAGGTR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=290, Percent_Identity=37.5862068965517, Blast_Score=208, Evalue=5e-55,
Organism=Escherichia coli, GI1786401, Length=297, Percent_Identity=31.6498316498317, Blast_Score=160, Evalue=1e-40,
Organism=Escherichia coli, GI1789639, Length=297, Percent_Identity=28.2828282828283, Blast_Score=131, Evalue=7e-32,
Organism=Escherichia coli, GI1787589, Length=293, Percent_Identity=26.6211604095563, Blast_Score=121, Evalue=8e-29,
Organism=Escherichia coli, GI1787128, Length=288, Percent_Identity=28.8194444444444, Blast_Score=118, Evalue=5e-28,
Organism=Escherichia coli, GI87081978, Length=299, Percent_Identity=28.4280936454849, Blast_Score=101, Evalue=7e-23,
Organism=Escherichia coli, GI1789440, Length=306, Percent_Identity=24.5098039215686, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1789173, Length=138, Percent_Identity=32.6086956521739, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788706, Length=172, Percent_Identity=27.3255813953488, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI157672245, Length=138, Percent_Identity=31.8840579710145, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI87082132, Length=293, Percent_Identity=25.2559726962457, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI145693105, Length=255, Percent_Identity=27.843137254902, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 39092; Mature: 39092

Theoretical pI: Translated: 11.49; Mature: 11.49

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRFQEMQVFVRIAERQSFSRASDDLRIPRATVTNLMKRMEARLGARLLERTTRTVCLTQ
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEC
DGEAYYRRCVRLIADLEEAEGAFRAAAPRGLLRVNLQGTLARYFVVPALPDFLARYPGIR
CCHHHHHHHHHHHHHHHHHCCHHHHCCCCCEEEEECCHHHHHHHHHHCCHHHHHHCCCEE
LHIGEDDRFVDLVREGVDCVLRSGNLQDSSMVGRRVAQLEQVTVASPGYLARHGEPAELA
EEECCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHCCCCCHHHH
ALAAHRAVDYVSSATGKPMPLEFTVDGRVTEVRLDAAISVAGVELYTGAAVAGLGIVQVP
HHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEEECHHHEEECHHHHCCHHHHCCCHHHCC
RYRIADELADGRLRIVLGAYPPPPMPVSVLYPHSRQLSSRVRAFAQWLRERFDAAQAGRA
CHHHHHHHCCCEEEEEEECCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCHH
TARAARRALRVPPRARRRRLGRNRRKRCYRGGRVARFVFVVANTPDAGGTR
HHHHHHHHHCCCCHHHHHHHCHHHHHHHHCCCCEEEEEEEEEECCCCCCCC
>Mature Secondary Structure
MDRFQEMQVFVRIAERQSFSRASDDLRIPRATVTNLMKRMEARLGARLLERTTRTVCLTQ
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEC
DGEAYYRRCVRLIADLEEAEGAFRAAAPRGLLRVNLQGTLARYFVVPALPDFLARYPGIR
CCHHHHHHHHHHHHHHHHHCCHHHHCCCCCEEEEECCHHHHHHHHHHCCHHHHHHCCCEE
LHIGEDDRFVDLVREGVDCVLRSGNLQDSSMVGRRVAQLEQVTVASPGYLARHGEPAELA
EEECCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHCCCCCHHHH
ALAAHRAVDYVSSATGKPMPLEFTVDGRVTEVRLDAAISVAGVELYTGAAVAGLGIVQVP
HHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEEECHHHEEECHHHHCCHHHHCCCHHHCC
RYRIADELADGRLRIVLGAYPPPPMPVSVLYPHSRQLSSRVRAFAQWLRERFDAAQAGRA
CHHHHHHHCCCEEEEEEECCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCHH
TARAARRALRVPPRARRRRLGRNRRKRCYRGGRVARFVFVVANTPDAGGTR
HHHHHHHHHCCCCHHHHHHHCHHHHHHHHCCCCEEEEEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]