Definition Burkholderia mallei NCTC 10247 chromosome II, complete genome.
Accession NC_009079
Length 2,352,693

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The map label for this gene is hrpB [H]

Identifier: 126445664

GI number: 126445664

Start: 1045783

End: 1047342

Strand: Reverse

Name: hrpB [H]

Synonym: BMA10247_A1111

Alternate gene names: 126445664

Gene position: 1047342-1045783 (Counterclockwise)

Preceding gene: 126446577

Following gene: 126447671

Centisome position: 44.52

GC content: 67.95

Gene sequence:

>1560_bases
ATGTTTTGTGATTTCTATTTCCCGTTGATCGCCACGCTCGCCTCCGCGCTCGCGCCGCCCGGGCTGCGCGCGAAAATCCG
CGAGGCGAGAGTCCTCTCCGCGTCCGCCGACCTCGCGCGTCTCACGCAGGACGGTTGCGGCGACGCGGAGCGAGCGTACC
GGATCCAGCTGCACGCCGACATGCAGCTCGCGATGGCGCTCGAATTCGATGCCGAGGAATCGTATAGAAGGTCACGCAAG
CTGATGCATGCGCCGAAGGACGAGATCCGTCTGCTGTCGTTTCGCAACACCGGATGGCAGGCGCTGTTCCGGCGCCGGCT
CGGCACCGCGATGGCCTGCTTCGCGAACGTGACCAGCGAGCCCGCCGTCGATCCCTGCCGCCGCATCGAGGGGCTGTTCG
GGACGATGTGCGTGTGGTTCGAGCTCGGCCATCTCGACGAGGCCGGCTACCTGCTCGACGACATCGAGCTCGCGATCGAG
CGCCTGCTCGCCTCGCACGAGGATTTCGCGCTGTGGCGCGAGCTCGCGCAGACGATGCGCGCGGATCTGGATCTGCAAAG
ACTCGTGCGGCATGCACCGGAGCTCTCCGATCACGTGTACTGGCAATCGGCGCGCCTGAGCGATCCGGTCCGCCCGCCCG
TCGAGCGCGAGCGGCTCGCGAGCCGCCCGATCGCCGAACAGGACGTGCGCTCGCCGCTGCTGCGCGCGCGCCTCGATTTC
AGGACCGCGCTGCGCCGCCTCGCCGGCGGGCAAGCCGACGCGCTCAACGATCTGATGGCGCATCTCGACTGGGCCGACGC
GAACGGCCTGACGTCCTATCAGAACTCGGCCCGGCAGGAAATCGCGCTCGCCGGCCTGATCGGCAACGCGCCGCATGTCG
CGGAGATGGTGCTCGCGCCGCTCGCGAACGAAATCCGCGTCGGGCACCATCACGGTCATCTCGAGATCCTGTACTGCCTC
GCGAAGGTGAATCAGGCGCAGGGCCGAACCCACCATTCGCAACAGCTGTACAGCCGCTACGCGATGACGGCGGTCCATTG
CGCGCGCAAGGGCGCGTGCGATCTCGCGCGCAACAGCCCGCAGGGGCACGCGCCCCACGTCGCGGACGACATCAGCGCGC
GCCTGCCCGCCAAATACCGCCGCGCGTACCATTTCCTGCTGAGCAACCTCGAACGCAGCGATCTGGCGATCGGCGAGATC
GCGGAAGTCATCGGCGTGACGGTTCGCTCGCTGCAGAACACGTTCAAGGCGAGCCTGGGCGCGACGCCGTCGGAGATCAT
CCGTCAGGAACGGATGAAGCGCATCCATCGTGAACTGCAGGGCGAGGATGCGCGGTTCGGCCAGCGCGTGCTCGACTCCG
GCAACCGCTGGGGCGTGCCGAATCGCTCGACGCTGCTCAACGCGTACAAGCGGCAGTTCAACGAGGCGCCTTCGCAGACG
CTGCACCGCAAGCATCCGTACAAGCCCGGCGAAGACGTCGCGTCCGGCGTCCTCGCGAGCGCCGCGCATCCGGCGGCGGC
CAGGCAGCAGCACGAAGCGAGCGTGTCGACGGCCGACTGA

Upstream 100 bases:

>100_bases
CGCCGCCCGTCATTCGCCGGCTCATCCCGGCCGCCCCGCGCACGTCGACGGGCCGGGCGCAACGCCGGGACGTTGCACGC
CTCACACCATGGAGTAGCGC

Downstream 100 bases:

>100_bases
GCCGCGCCGCGGGCGGCGGGGCCGCGCATCGCCCCCCGCCCGCGGCCGTATGGTAAGCTCGCGCGGCGAGCCGGCGGCGG
CTGCCGGCACGGCGCGCCGC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 519; Mature: 519

Protein sequence:

>519_residues
MFCDFYFPLIATLASALAPPGLRAKIREARVLSASADLARLTQDGCGDAERAYRIQLHADMQLAMALEFDAEESYRRSRK
LMHAPKDEIRLLSFRNTGWQALFRRRLGTAMACFANVTSEPAVDPCRRIEGLFGTMCVWFELGHLDEAGYLLDDIELAIE
RLLASHEDFALWRELAQTMRADLDLQRLVRHAPELSDHVYWQSARLSDPVRPPVERERLASRPIAEQDVRSPLLRARLDF
RTALRRLAGGQADALNDLMAHLDWADANGLTSYQNSARQEIALAGLIGNAPHVAEMVLAPLANEIRVGHHHGHLEILYCL
AKVNQAQGRTHHSQQLYSRYAMTAVHCARKGACDLARNSPQGHAPHVADDISARLPAKYRRAYHFLLSNLERSDLAIGEI
AEVIGVTVRSLQNTFKASLGATPSEIIRQERMKRIHRELQGEDARFGQRVLDSGNRWGVPNRSTLLNAYKRQFNEAPSQT
LHRKHPYKPGEDVASGVLASAAHPAAARQQHEASVSTAD

Sequences:

>Translated_519_residues
MFCDFYFPLIATLASALAPPGLRAKIREARVLSASADLARLTQDGCGDAERAYRIQLHADMQLAMALEFDAEESYRRSRK
LMHAPKDEIRLLSFRNTGWQALFRRRLGTAMACFANVTSEPAVDPCRRIEGLFGTMCVWFELGHLDEAGYLLDDIELAIE
RLLASHEDFALWRELAQTMRADLDLQRLVRHAPELSDHVYWQSARLSDPVRPPVERERLASRPIAEQDVRSPLLRARLDF
RTALRRLAGGQADALNDLMAHLDWADANGLTSYQNSARQEIALAGLIGNAPHVAEMVLAPLANEIRVGHHHGHLEILYCL
AKVNQAQGRTHHSQQLYSRYAMTAVHCARKGACDLARNSPQGHAPHVADDISARLPAKYRRAYHFLLSNLERSDLAIGEI
AEVIGVTVRSLQNTFKASLGATPSEIIRQERMKRIHRELQGEDARFGQRVLDSGNRWGVPNRSTLLNAYKRQFNEAPSQT
LHRKHPYKPGEDVASGVLASAAHPAAARQQHEASVSTAD
>Mature_519_residues
MFCDFYFPLIATLASALAPPGLRAKIREARVLSASADLARLTQDGCGDAERAYRIQLHADMQLAMALEFDAEESYRRSRK
LMHAPKDEIRLLSFRNTGWQALFRRRLGTAMACFANVTSEPAVDPCRRIEGLFGTMCVWFELGHLDEAGYLLDDIELAIE
RLLASHEDFALWRELAQTMRADLDLQRLVRHAPELSDHVYWQSARLSDPVRPPVERERLASRPIAEQDVRSPLLRARLDF
RTALRRLAGGQADALNDLMAHLDWADANGLTSYQNSARQEIALAGLIGNAPHVAEMVLAPLANEIRVGHHHGHLEILYCL
AKVNQAQGRTHHSQQLYSRYAMTAVHCARKGACDLARNSPQGHAPHVADDISARLPAKYRRAYHFLLSNLERSDLAIGEI
AEVIGVTVRSLQNTFKASLGATPSEIIRQERMKRIHRELQGEDARFGQRVLDSGNRWGVPNRSTLLNAYKRQFNEAPSQT
LHRKHPYKPGEDVASGVLASAAHPAAARQQHEASVSTAD

Specific function: Positive regulation of hypersensitive response genes involved in plant pathogenicity and partly of its own synthesis in minimal medium [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 58058; Mature: 58058

Theoretical pI: Translated: 8.25; Mature: 8.25

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFCDFYFPLIATLASALAPPGLRAKIREARVLSASADLARLTQDGCGDAERAYRIQLHAD
CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECC
MQLAMALEFDAEESYRRSRKLMHAPKDEIRLLSFRNTGWQALFRRRLGTAMACFANVTSE
CEEEHHEECCCHHHHHHHHHHHCCCHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHCCCC
PAVDPCRRIEGLFGTMCVWFELGHLDEAGYLLDDIELAIERLLASHEDFALWRELAQTMR
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
ADLDLQRLVRHAPELSDHVYWQSARLSDPVRPPVERERLASRPIAEQDVRSPLLRARLDF
HCCCHHHHHHHCCCHHHHHEECCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHH
RTALRRLAGGQADALNDLMAHLDWADANGLTSYQNSARQEIALAGLIGNAPHVAEMVLAP
HHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
LANEIRVGHHHGHLEILYCLAKVNQAQGRTHHSQQLYSRYAMTAVHCARKGACDLARNSP
HHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHCCCC
QGHAPHVADDISARLPAKYRRAYHFLLSNLERSDLAIGEIAEVIGVTVRSLQNTFKASLG
CCCCCCCHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
ATPSEIIRQERMKRIHRELQGEDARFGQRVLDSGNRWGVPNRSTLLNAYKRQFNEAPSQT
CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCHHHH
LHRKHPYKPGEDVASGVLASAAHPAAARQQHEASVSTAD
HHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCC
>Mature Secondary Structure
MFCDFYFPLIATLASALAPPGLRAKIREARVLSASADLARLTQDGCGDAERAYRIQLHAD
CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECC
MQLAMALEFDAEESYRRSRKLMHAPKDEIRLLSFRNTGWQALFRRRLGTAMACFANVTSE
CEEEHHEECCCHHHHHHHHHHHCCCHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHCCCC
PAVDPCRRIEGLFGTMCVWFELGHLDEAGYLLDDIELAIERLLASHEDFALWRELAQTMR
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
ADLDLQRLVRHAPELSDHVYWQSARLSDPVRPPVERERLASRPIAEQDVRSPLLRARLDF
HCCCHHHHHHHCCCHHHHHEECCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHH
RTALRRLAGGQADALNDLMAHLDWADANGLTSYQNSARQEIALAGLIGNAPHVAEMVLAP
HHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
LANEIRVGHHHGHLEILYCLAKVNQAQGRTHHSQQLYSRYAMTAVHCARKGACDLARNSP
HHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHCCCC
QGHAPHVADDISARLPAKYRRAYHFLLSNLERSDLAIGEIAEVIGVTVRSLQNTFKASLG
CCCCCCCHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
ATPSEIIRQERMKRIHRELQGEDARFGQRVLDSGNRWGVPNRSTLLNAYKRQFNEAPSQT
CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCHHHH
LHRKHPYKPGEDVASGVLASAAHPAAARQQHEASVSTAD
HHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1479894; 11823852 [H]