Definition | Burkholderia mallei NCTC 10247 chromosome II, complete genome. |
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Accession | NC_009079 |
Length | 2,352,693 |
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The map label for this gene is hrpB [H]
Identifier: 126445664
GI number: 126445664
Start: 1045783
End: 1047342
Strand: Reverse
Name: hrpB [H]
Synonym: BMA10247_A1111
Alternate gene names: 126445664
Gene position: 1047342-1045783 (Counterclockwise)
Preceding gene: 126446577
Following gene: 126447671
Centisome position: 44.52
GC content: 67.95
Gene sequence:
>1560_bases ATGTTTTGTGATTTCTATTTCCCGTTGATCGCCACGCTCGCCTCCGCGCTCGCGCCGCCCGGGCTGCGCGCGAAAATCCG CGAGGCGAGAGTCCTCTCCGCGTCCGCCGACCTCGCGCGTCTCACGCAGGACGGTTGCGGCGACGCGGAGCGAGCGTACC GGATCCAGCTGCACGCCGACATGCAGCTCGCGATGGCGCTCGAATTCGATGCCGAGGAATCGTATAGAAGGTCACGCAAG CTGATGCATGCGCCGAAGGACGAGATCCGTCTGCTGTCGTTTCGCAACACCGGATGGCAGGCGCTGTTCCGGCGCCGGCT CGGCACCGCGATGGCCTGCTTCGCGAACGTGACCAGCGAGCCCGCCGTCGATCCCTGCCGCCGCATCGAGGGGCTGTTCG GGACGATGTGCGTGTGGTTCGAGCTCGGCCATCTCGACGAGGCCGGCTACCTGCTCGACGACATCGAGCTCGCGATCGAG CGCCTGCTCGCCTCGCACGAGGATTTCGCGCTGTGGCGCGAGCTCGCGCAGACGATGCGCGCGGATCTGGATCTGCAAAG ACTCGTGCGGCATGCACCGGAGCTCTCCGATCACGTGTACTGGCAATCGGCGCGCCTGAGCGATCCGGTCCGCCCGCCCG TCGAGCGCGAGCGGCTCGCGAGCCGCCCGATCGCCGAACAGGACGTGCGCTCGCCGCTGCTGCGCGCGCGCCTCGATTTC AGGACCGCGCTGCGCCGCCTCGCCGGCGGGCAAGCCGACGCGCTCAACGATCTGATGGCGCATCTCGACTGGGCCGACGC GAACGGCCTGACGTCCTATCAGAACTCGGCCCGGCAGGAAATCGCGCTCGCCGGCCTGATCGGCAACGCGCCGCATGTCG CGGAGATGGTGCTCGCGCCGCTCGCGAACGAAATCCGCGTCGGGCACCATCACGGTCATCTCGAGATCCTGTACTGCCTC GCGAAGGTGAATCAGGCGCAGGGCCGAACCCACCATTCGCAACAGCTGTACAGCCGCTACGCGATGACGGCGGTCCATTG CGCGCGCAAGGGCGCGTGCGATCTCGCGCGCAACAGCCCGCAGGGGCACGCGCCCCACGTCGCGGACGACATCAGCGCGC GCCTGCCCGCCAAATACCGCCGCGCGTACCATTTCCTGCTGAGCAACCTCGAACGCAGCGATCTGGCGATCGGCGAGATC GCGGAAGTCATCGGCGTGACGGTTCGCTCGCTGCAGAACACGTTCAAGGCGAGCCTGGGCGCGACGCCGTCGGAGATCAT CCGTCAGGAACGGATGAAGCGCATCCATCGTGAACTGCAGGGCGAGGATGCGCGGTTCGGCCAGCGCGTGCTCGACTCCG GCAACCGCTGGGGCGTGCCGAATCGCTCGACGCTGCTCAACGCGTACAAGCGGCAGTTCAACGAGGCGCCTTCGCAGACG CTGCACCGCAAGCATCCGTACAAGCCCGGCGAAGACGTCGCGTCCGGCGTCCTCGCGAGCGCCGCGCATCCGGCGGCGGC CAGGCAGCAGCACGAAGCGAGCGTGTCGACGGCCGACTGA
Upstream 100 bases:
>100_bases CGCCGCCCGTCATTCGCCGGCTCATCCCGGCCGCCCCGCGCACGTCGACGGGCCGGGCGCAACGCCGGGACGTTGCACGC CTCACACCATGGAGTAGCGC
Downstream 100 bases:
>100_bases GCCGCGCCGCGGGCGGCGGGGCCGCGCATCGCCCCCCGCCCGCGGCCGTATGGTAAGCTCGCGCGGCGAGCCGGCGGCGG CTGCCGGCACGGCGCGCCGC
Product: AraC family transcriptional regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 519; Mature: 519
Protein sequence:
>519_residues MFCDFYFPLIATLASALAPPGLRAKIREARVLSASADLARLTQDGCGDAERAYRIQLHADMQLAMALEFDAEESYRRSRK LMHAPKDEIRLLSFRNTGWQALFRRRLGTAMACFANVTSEPAVDPCRRIEGLFGTMCVWFELGHLDEAGYLLDDIELAIE RLLASHEDFALWRELAQTMRADLDLQRLVRHAPELSDHVYWQSARLSDPVRPPVERERLASRPIAEQDVRSPLLRARLDF RTALRRLAGGQADALNDLMAHLDWADANGLTSYQNSARQEIALAGLIGNAPHVAEMVLAPLANEIRVGHHHGHLEILYCL AKVNQAQGRTHHSQQLYSRYAMTAVHCARKGACDLARNSPQGHAPHVADDISARLPAKYRRAYHFLLSNLERSDLAIGEI AEVIGVTVRSLQNTFKASLGATPSEIIRQERMKRIHRELQGEDARFGQRVLDSGNRWGVPNRSTLLNAYKRQFNEAPSQT LHRKHPYKPGEDVASGVLASAAHPAAARQQHEASVSTAD
Sequences:
>Translated_519_residues MFCDFYFPLIATLASALAPPGLRAKIREARVLSASADLARLTQDGCGDAERAYRIQLHADMQLAMALEFDAEESYRRSRK LMHAPKDEIRLLSFRNTGWQALFRRRLGTAMACFANVTSEPAVDPCRRIEGLFGTMCVWFELGHLDEAGYLLDDIELAIE RLLASHEDFALWRELAQTMRADLDLQRLVRHAPELSDHVYWQSARLSDPVRPPVERERLASRPIAEQDVRSPLLRARLDF RTALRRLAGGQADALNDLMAHLDWADANGLTSYQNSARQEIALAGLIGNAPHVAEMVLAPLANEIRVGHHHGHLEILYCL AKVNQAQGRTHHSQQLYSRYAMTAVHCARKGACDLARNSPQGHAPHVADDISARLPAKYRRAYHFLLSNLERSDLAIGEI AEVIGVTVRSLQNTFKASLGATPSEIIRQERMKRIHRELQGEDARFGQRVLDSGNRWGVPNRSTLLNAYKRQFNEAPSQT LHRKHPYKPGEDVASGVLASAAHPAAARQQHEASVSTAD >Mature_519_residues MFCDFYFPLIATLASALAPPGLRAKIREARVLSASADLARLTQDGCGDAERAYRIQLHADMQLAMALEFDAEESYRRSRK LMHAPKDEIRLLSFRNTGWQALFRRRLGTAMACFANVTSEPAVDPCRRIEGLFGTMCVWFELGHLDEAGYLLDDIELAIE RLLASHEDFALWRELAQTMRADLDLQRLVRHAPELSDHVYWQSARLSDPVRPPVERERLASRPIAEQDVRSPLLRARLDF RTALRRLAGGQADALNDLMAHLDWADANGLTSYQNSARQEIALAGLIGNAPHVAEMVLAPLANEIRVGHHHGHLEILYCL AKVNQAQGRTHHSQQLYSRYAMTAVHCARKGACDLARNSPQGHAPHVADDISARLPAKYRRAYHFLLSNLERSDLAIGEI AEVIGVTVRSLQNTFKASLGATPSEIIRQERMKRIHRELQGEDARFGQRVLDSGNRWGVPNRSTLLNAYKRQFNEAPSQT LHRKHPYKPGEDVASGVLASAAHPAAARQQHEASVSTAD
Specific function: Positive regulation of hypersensitive response genes involved in plant pathogenicity and partly of its own synthesis in minimal medium [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]
Homologues:
None
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009057 - InterPro: IPR012287 - InterPro: IPR018062 - InterPro: IPR018060 [H]
Pfam domain/function: PF00165 HTH_AraC [H]
EC number: NA
Molecular weight: Translated: 58058; Mature: 58058
Theoretical pI: Translated: 8.25; Mature: 8.25
Prosite motif: PS01124 HTH_ARAC_FAMILY_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFCDFYFPLIATLASALAPPGLRAKIREARVLSASADLARLTQDGCGDAERAYRIQLHAD CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECC MQLAMALEFDAEESYRRSRKLMHAPKDEIRLLSFRNTGWQALFRRRLGTAMACFANVTSE CEEEHHEECCCHHHHHHHHHHHCCCHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHCCCC PAVDPCRRIEGLFGTMCVWFELGHLDEAGYLLDDIELAIERLLASHEDFALWRELAQTMR CCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH ADLDLQRLVRHAPELSDHVYWQSARLSDPVRPPVERERLASRPIAEQDVRSPLLRARLDF HCCCHHHHHHHCCCHHHHHEECCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHH RTALRRLAGGQADALNDLMAHLDWADANGLTSYQNSARQEIALAGLIGNAPHVAEMVLAP HHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH LANEIRVGHHHGHLEILYCLAKVNQAQGRTHHSQQLYSRYAMTAVHCARKGACDLARNSP HHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHCCCC QGHAPHVADDISARLPAKYRRAYHFLLSNLERSDLAIGEIAEVIGVTVRSLQNTFKASLG CCCCCCCHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC ATPSEIIRQERMKRIHRELQGEDARFGQRVLDSGNRWGVPNRSTLLNAYKRQFNEAPSQT CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCHHHH LHRKHPYKPGEDVASGVLASAAHPAAARQQHEASVSTAD HHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCC >Mature Secondary Structure MFCDFYFPLIATLASALAPPGLRAKIREARVLSASADLARLTQDGCGDAERAYRIQLHAD CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECC MQLAMALEFDAEESYRRSRKLMHAPKDEIRLLSFRNTGWQALFRRRLGTAMACFANVTSE CEEEHHEECCCHHHHHHHHHHHCCCHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHCCCC PAVDPCRRIEGLFGTMCVWFELGHLDEAGYLLDDIELAIERLLASHEDFALWRELAQTMR CCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH ADLDLQRLVRHAPELSDHVYWQSARLSDPVRPPVERERLASRPIAEQDVRSPLLRARLDF HCCCHHHHHHHCCCHHHHHEECCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHH RTALRRLAGGQADALNDLMAHLDWADANGLTSYQNSARQEIALAGLIGNAPHVAEMVLAP HHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH LANEIRVGHHHGHLEILYCLAKVNQAQGRTHHSQQLYSRYAMTAVHCARKGACDLARNSP HHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHCCCC QGHAPHVADDISARLPAKYRRAYHFLLSNLERSDLAIGEIAEVIGVTVRSLQNTFKASLG CCCCCCCHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC ATPSEIIRQERMKRIHRELQGEDARFGQRVLDSGNRWGVPNRSTLLNAYKRQFNEAPSQT CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCHHHH LHRKHPYKPGEDVASGVLASAAHPAAARQQHEASVSTAD HHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1479894; 11823852 [H]