Definition | Burkholderia mallei NCTC 10247 chromosome II, complete genome. |
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Accession | NC_009079 |
Length | 2,352,693 |
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The map label for this gene is iciA [H]
Identifier: 126445611
GI number: 126445611
Start: 2030619
End: 2031596
Strand: Direct
Name: iciA [H]
Synonym: BMA10247_A2099
Alternate gene names: 126445611
Gene position: 2030619-2031596 (Clockwise)
Preceding gene: 126446391
Following gene: 126447665
Centisome position: 86.31
GC content: 73.01
Gene sequence:
>978_bases ATGACGATCGATCCGAAACAGGCGGCGGCGCTCGTCGCCGTCGCCGATACCGGCAGCTTCGAGCAGGCGGCCGCGCGGCT GCACGTGACCGCGTCGGCCGTCACGCAGCGCGTGCGGGCGCTGGAGGCGAGCCTCGGCGCGCCGCTGCTGCTGCGCACGC GGCCGTGCCGGCCGACGGCCGACGGCCAGCGCGTGCTGCAGCACCTGCGCCGGATGGCGCTGCTGCAAGTCGATCTGCAA GCGGAGCTCGAAGCCGAGCGCGGCTCGACGATCGCGGTCGCGATCGCGCTCAACTCGGACAGCCTCGGCTCGTGGTTCCT GCCCGCGCTCACTTCGGTGCTCGCGGGCGAGCGGATGCTGTTCGAGCTGATCGTCGAGGATCAGGATCACACATTCGCGC TGCTCGAAAGCGGCATGGCGATCGGCTGCGTGACGACGCAGAGCAAGCCGATGCGCGGCTGCTTCGCGACGCCGCTCGGC ACGATGCGCTACCGGTTGATCGCCGCGGAGGAATTCGCCGCGCGCTGGTTCGCGCAGGGCCTCACCCGCGAGAGCGCGCG CGAGGCGCCCGTCGTCGCGCACGGCCGGCGCGACACGCTGCAATCGTCGTTTCTGCGGGACAAGCTCGGCCTGCCGGACG GCGCGTTTCCGTGCCATTACGTGCCGGGCACGCACGCGCACTTCGCGGCCGTGCGGCACGGGCTCGGCTATGCGATGGTG CCCGAGCTGCTGCTCGGCACGACGCCGCTCGCCGAGCAGCGGCTCGTCGATCTCGCGCCCGCGCATTCGACCGACGTGTC GCTGTACTGGCACGCGTGGACCGTGCAGTCGCCGAAGATGGAATCGCTGTCGTCGCGGGTCGTCGAGGCCGCGCAGCAAC TGCTCGCGCCGCCGCCGCGCGGCGCCGCCGCGGCGGGCGGGCGCGCCGCGGCGGCGCCCGCTCCCGTCAAGCGCGCGAAC GCGCGAAATACGCGCTGA
Upstream 100 bases:
>100_bases GTCCGGGGAGGATCCCGATACCGATACAATATTTAGCTCAAGTTGATTACGCTAAATTTTATTTAGGCGGCCGGTGTGCC CGGCGCCATGCGAGCGACAG
Downstream 100 bases:
>100_bases TCGCGGCGACAGCCGTGTCGATGTCGTCGCGCGACACGTCGCAGTGCGTGACGAAGCGCGACGCATACAGCATCTGCGTG AGAATCCCGCGCTCCTTGAG
Product: chromosome replication initiation inhibitor protein
Products: NA
Alternate protein names: OriC replication inhibitor [H]
Number of amino acids: Translated: 325; Mature: 324
Protein sequence:
>325_residues MTIDPKQAAALVAVADTGSFEQAAARLHVTASAVTQRVRALEASLGAPLLLRTRPCRPTADGQRVLQHLRRMALLQVDLQ AELEAERGSTIAVAIALNSDSLGSWFLPALTSVLAGERMLFELIVEDQDHTFALLESGMAIGCVTTQSKPMRGCFATPLG TMRYRLIAAEEFAARWFAQGLTRESAREAPVVAHGRRDTLQSSFLRDKLGLPDGAFPCHYVPGTHAHFAAVRHGLGYAMV PELLLGTTPLAEQRLVDLAPAHSTDVSLYWHAWTVQSPKMESLSSRVVEAAQQLLAPPPRGAAAAGGRAAAAPAPVKRAN ARNTR
Sequences:
>Translated_325_residues MTIDPKQAAALVAVADTGSFEQAAARLHVTASAVTQRVRALEASLGAPLLLRTRPCRPTADGQRVLQHLRRMALLQVDLQ AELEAERGSTIAVAIALNSDSLGSWFLPALTSVLAGERMLFELIVEDQDHTFALLESGMAIGCVTTQSKPMRGCFATPLG TMRYRLIAAEEFAARWFAQGLTRESAREAPVVAHGRRDTLQSSFLRDKLGLPDGAFPCHYVPGTHAHFAAVRHGLGYAMV PELLLGTTPLAEQRLVDLAPAHSTDVSLYWHAWTVQSPKMESLSSRVVEAAQQLLAPPPRGAAAAGGRAAAAPAPVKRAN ARNTR >Mature_324_residues TIDPKQAAALVAVADTGSFEQAAARLHVTASAVTQRVRALEASLGAPLLLRTRPCRPTADGQRVLQHLRRMALLQVDLQA ELEAERGSTIAVAIALNSDSLGSWFLPALTSVLAGERMLFELIVEDQDHTFALLESGMAIGCVTTQSKPMRGCFATPLGT MRYRLIAAEEFAARWFAQGLTRESAREAPVVAHGRRDTLQSSFLRDKLGLPDGAFPCHYVPGTHAHFAAVRHGLGYAMVP ELLLGTTPLAEQRLVDLAPAHSTDVSLYWHAWTVQSPKMESLSSRVVEAAQQLLAPPPRGAAAAGGRAAAAPAPVKRANA RNTR
Specific function: Specific inhibitor of chromosomal initiation of replication in vitro. Binds the three 13-mers in the origin (oriC) to block initiation of replication [H]
COG id: COG0583
COG function: function code K; Transcriptional regulator
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1789283, Length=293, Percent_Identity=35.8361774744027, Blast_Score=183, Evalue=1e-47,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000847 - InterPro: IPR005119 - InterPro: IPR017685 - InterPro: IPR011991 [H]
Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]
EC number: NA
Molecular weight: Translated: 34860; Mature: 34729
Theoretical pI: Translated: 8.97; Mature: 8.97
Prosite motif: PS50931 HTH_LYSR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIDPKQAAALVAVADTGSFEQAAARLHVTASAVTQRVRALEASLGAPLLLRTRPCRPTA CCCCHHHHEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCC DGQRVLQHLRRMALLQVDLQAELEAERGSTIAVAIALNSDSLGSWFLPALTSVLAGERML CHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCHHHH FELIVEDQDHTFALLESGMAIGCVTTQSKPMRGCFATPLGTMRYRLIAAEEFAARWFAQG HHHHHCCCCCHHHHHHCCCEEEEEECCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHH LTRESAREAPVVAHGRRDTLQSSFLRDKLGLPDGAFPCHYVPGTHAHFAAVRHGLGYAMV HHHHHHHCCCEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHH PELLLGTTPLAEQRLVDLAPAHSTDVSLYWHAWTVQSPKMESLSSRVVEAAQQLLAPPPR HHHHHCCCCHHHHHHHHHCCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCC GAAAAGGRAAAAPAPVKRANARNTR CCCCCCCCCCCCCCCCHHCCCCCCC >Mature Secondary Structure TIDPKQAAALVAVADTGSFEQAAARLHVTASAVTQRVRALEASLGAPLLLRTRPCRPTA CCCHHHHEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCC DGQRVLQHLRRMALLQVDLQAELEAERGSTIAVAIALNSDSLGSWFLPALTSVLAGERML CHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCHHHH FELIVEDQDHTFALLESGMAIGCVTTQSKPMRGCFATPLGTMRYRLIAAEEFAARWFAQG HHHHHCCCCCHHHHHHCCCEEEEEECCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHH LTRESAREAPVVAHGRRDTLQSSFLRDKLGLPDGAFPCHYVPGTHAHFAAVRHGLGYAMV HHHHHHHCCCEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHH PELLLGTTPLAEQRLVDLAPAHSTDVSLYWHAWTVQSPKMESLSSRVVEAAQQLLAPPPR HHHHHCCCCHHHHHHHHHCCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCC GAAAAGGRAAAAPAPVKRANARNTR CCCCCCCCCCCCCCCCHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9286976 [H]