Click here to switch to the map view.

The map label for this gene is secD [H]

Identifier: 126454226

GI number: 126454226

Start: 3284215

End: 3286239

Strand: Direct

Name: secD [H]

Synonym: BURPS1106A_3364

Alternate gene names: 126454226

Gene position: 3284215-3286239 (Clockwise)

Preceding gene: 126452530

Following gene: 126455336

Centisome position: 82.34

GC content: 68.74

Gene sequence:

>2025_bases
ATGAATCGTTATCCAATCTGGAAATATGTGGTGATGGTCGTGGCGCTCGCCATCGGCTTTCTGTACACATTGCCCAACTT
CTTCGGCGAAGCGCCGGCGGTGCAGGTATCGAGCGGCAAGGCCACGGTCAAGCTCGGCGCCGACACGCTCGCGCAGGTCG
AAGCAGCGCTCAAGGCCAACCAGGTCGCGGCCGACGACGTCACGTTCGACAATTCCAGCGCCAACGCGACCATCCGCGTG
CGCCTGAAGGACACCGACACGCAATTGCGCGTGAAGGACATGCTGCAAAAGACGCTGAACGCCGATCCGAACGATCCGCA
GTACGTCGTCGCGTTGAACCTGCAGAGCGCGTCGCCGCGCTGGCTGACCGCGCTGCACGCGCTGCCGATGTATCTCGGCC
TCGATCTGCGCGGCGGCGTCCACTTCCTGCTGCAAGTCGACATGACGGGCGCGCTCACGAAGAAGCTCGATTCCGACGCG
TCCGACGCCCGCACGCAACTGCGCGACAAGGGCATTCGCGACGGCGGCGTCGCCCGCGTCGATCAGACGGTCGTCGCGAA
CTTCGCCGACCAGGACACCGCCGAGCAAGCGCGCAAGCTGCTCGCCTCGTCCGTCTCCGAACTCCAGTGGGCGACGCAGC
CGGGCGGCGGCGGCTATCAGGTCGTCGGCACGTTCACGCCGGCCGTCCAGAAGGCCGTCGAGGAAGCGGCGCTCAAGCAG
AACCTGACGACGCTGCACAACCGCGTCAACGAACTCGGCGTGTCCGAGCCGATCCTCCAGCAGCAGGGCAACGACCGGAT
CGTCGTCGAGCTGCCGGGCGTGCAGGACACCGCGAAGGCGAAGGACATCATCGGCCGCACCGCGACGCTCGAGGCGCGCC
TCGCCGATCCGCTGAACACGCACCCGAATCCGAACGATCCGGTGCCGCCGGGCGAGGAACTGTTCACGCAGGGCAACCAG
GCGCCGGTGCTGCTCAAGAAGCAGGTGATCTTCACGGGCGACCGCATCATCGACGCGTCCGCGGGCTTCGACGAGCATCA
GCGTCCGTCCGTGAACATCCGCCTCGATTCGGCGGGCGGCCGCGCGGTGCGCGCGGTGTCGCGCGAGAACATCGGCAAGC
CGATGGCGATGGTGCTGTTCGAGAAGGGCAAGGGCGAAGTGCTGACCGTCGCGACGATCCAGTCGGAGCTCGGCGACCGC
TTCCAGATCACGGGCCAGCCGACCCCGCAGGCGGCCGCCGATCTCGCACTGCTGCTGCGCGCGGGCTCGCTCGCCGCGCC
GATGGACATCATCGAGGAACGCACGATCGGCCCGAGCCTCGGCGCGGACAACATCCGGATGGGCTTCCATTCGGTGATCT
GGGGCTTCGTCGCGATCGCCGTGTTCATGATCGCGTACTACATGCTGTTCGGCGTCGTATCGGTGCTCGGCCTGTCGGTG
AACCTGCTGCTGCTCGTCGCGGTGCTGTCGCTGATGCAGGCGACGCTCACGCTGCCCGGCATCGCGGCCATCGCGCTCGC
GCTCGGCATGGCGATCGACTCGAACGTGCTGATCAACGAGCGCATCCGCGAGGAGCTGCGCCGCGGCGCATCGCCGCAGA
TCGCGATCCAGGAAGGCTACGCGCACGCGTGGGCGACGATTCTCGATTCGAACGTGACGACGCTGATCGCGGGCCTCGCG
CTGCTCGCCTTCGGCTCGGGCCCGGTGCGCGCGTTCGCGATCGTGCACTGCCTCGGCATCCTGACGTCGATGTTCTCCGC
GGTGTTCTTCTCGCGCGGCCTCGTGAACCTCTGGTACGGCGGGCGCAAGAAGCTGCAGTCGCTCGCGATCGGCCAGGTGT
GGCGCCCCGCCGCCGAAGCCGGCACCGCGCCGCAGCTCGGCCAGGACGCGCGCGCGAGCGCGCCGCAGCCCGGCGCGCGC
GTCGCCGCGCCGAAGCAGCCGGCGGGCGCGCCGCGCACCGGCAAGCCGGTCGCGCGCCGCCGCTCGGGCCCGGGCGTGCC
GCCCAAGCAGGGCTCGTCCAACTAA

Upstream 100 bases:

>100_bases
GGCGCGTCCGGCCGCCCGACGCCCGCGCCGCGAAGCGCGCGGCCGAGGCCGGCGCCGCACGCGCCGCCATTCCAGCCAAC
CATCCCGTTCGGCCCCCCTC

Downstream 100 bases:

>100_bases
GCGCCGGAGACGCACATGGAATTTTTCCGCATCCGTAAAGACATTCCGTTCATGCGGCACGCGTTGGTCTTCAACGTGGT
CTCGCTCGTGACGTTCCTCG

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 674; Mature: 674

Protein sequence:

>674_residues
MNRYPIWKYVVMVVALAIGFLYTLPNFFGEAPAVQVSSGKATVKLGADTLAQVEAALKANQVAADDVTFDNSSANATIRV
RLKDTDTQLRVKDMLQKTLNADPNDPQYVVALNLQSASPRWLTALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDA
SDARTQLRDKGIRDGGVARVDQTVVANFADQDTAEQARKLLASSVSELQWATQPGGGGYQVVGTFTPAVQKAVEEAALKQ
NLTTLHNRVNELGVSEPILQQQGNDRIVVELPGVQDTAKAKDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQ
APVLLKKQVIFTGDRIIDASAGFDEHQRPSVNIRLDSAGGRAVRAVSRENIGKPMAMVLFEKGKGEVLTVATIQSELGDR
FQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFHSVIWGFVAIAVFMIAYYMLFGVVSVLGLSV
NLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERIREELRRGASPQIAIQEGYAHAWATILDSNVTTLIAGLA
LLAFGSGPVRAFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKKLQSLAIGQVWRPAAEAGTAPQLGQDARASAPQPGAR
VAAPKQPAGAPRTGKPVARRRSGPGVPPKQGSSN

Sequences:

>Translated_674_residues
MNRYPIWKYVVMVVALAIGFLYTLPNFFGEAPAVQVSSGKATVKLGADTLAQVEAALKANQVAADDVTFDNSSANATIRV
RLKDTDTQLRVKDMLQKTLNADPNDPQYVVALNLQSASPRWLTALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDA
SDARTQLRDKGIRDGGVARVDQTVVANFADQDTAEQARKLLASSVSELQWATQPGGGGYQVVGTFTPAVQKAVEEAALKQ
NLTTLHNRVNELGVSEPILQQQGNDRIVVELPGVQDTAKAKDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQ
APVLLKKQVIFTGDRIIDASAGFDEHQRPSVNIRLDSAGGRAVRAVSRENIGKPMAMVLFEKGKGEVLTVATIQSELGDR
FQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFHSVIWGFVAIAVFMIAYYMLFGVVSVLGLSV
NLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERIREELRRGASPQIAIQEGYAHAWATILDSNVTTLIAGLA
LLAFGSGPVRAFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKKLQSLAIGQVWRPAAEAGTAPQLGQDARASAPQPGAR
VAAPKQPAGAPRTGKPVARRRSGPGVPPKQGSSN
>Mature_674_residues
MNRYPIWKYVVMVVALAIGFLYTLPNFFGEAPAVQVSSGKATVKLGADTLAQVEAALKANQVAADDVTFDNSSANATIRV
RLKDTDTQLRVKDMLQKTLNADPNDPQYVVALNLQSASPRWLTALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDA
SDARTQLRDKGIRDGGVARVDQTVVANFADQDTAEQARKLLASSVSELQWATQPGGGGYQVVGTFTPAVQKAVEEAALKQ
NLTTLHNRVNELGVSEPILQQQGNDRIVVELPGVQDTAKAKDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQ
APVLLKKQVIFTGDRIIDASAGFDEHQRPSVNIRLDSAGGRAVRAVSRENIGKPMAMVLFEKGKGEVLTVATIQSELGDR
FQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFHSVIWGFVAIAVFMIAYYMLFGVVSVLGLSV
NLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERIREELRRGASPQIAIQEGYAHAWATILDSNVTTLIAGLA
LLAFGSGPVRAFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKKLQSLAIGQVWRPAAEAGTAPQLGQDARASAPQPGAR
VAAPKQPAGAPRTGKPVARRRSGPGVPPKQGSSN

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=628, Percent_Identity=44.5859872611465, Blast_Score=508, Evalue=1e-145,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 71767; Mature: 71767

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRYPIWKYVVMVVALAIGFLYTLPNFFGEAPAVQVSSGKATVKLGADTLAQVEAALKAN
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEECHHHHHHHHHHHHHC
QVAADDVTFDNSSANATIRVRLKDTDTQLRVKDMLQKTLNADPNDPQYVVALNLQSASPR
CCCCCCCEECCCCCCEEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCH
WLTALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDASDARTQLRDKGIRDGGVARV
HHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHH
DQTVVANFADQDTAEQARKLLASSVSELQWATQPGGGGYQVVGTFTPAVQKAVEEAALKQ
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHH
NLTTLHNRVNELGVSEPILQQQGNDRIVVELPGVQDTAKAKDIIGRTATLEARLADPLNT
HHHHHHHHHHHCCCCCHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCCEEHHHHCCCCCC
HPNPNDPVPPGEELFTQGNQAPVLLKKQVIFTGDRIIDASAGFDEHQRPSVNIRLDSAGG
CCCCCCCCCCCHHHHHCCCCCCEEEEEEEEEECCEEEECCCCCCCCCCCCEEEEEECCCC
RAVRAVSRENIGKPMAMVLFEKGKGEVLTVATIQSELGDRFQITGQPTPQAAADLALLLR
HHHHHHHHHCCCCCEEEEEEECCCCCEEEEEEEHHHCCCEEEECCCCCCHHHHHHHHHHH
AGSLAAPMDIIEERTIGPSLGADNIRMGFHSVIWGFVAIAVFMIAYYMLFGVVSVLGLSV
CCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERIREELRRGASPQIAIQEGY
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEECCH
AHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLGILTSMFSAVFFSRGLVNLWYG
HHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC
GRKKLQSLAIGQVWRPAAEAGTAPQLGQDARASAPQPGARVAAPKQPAGAPRTGKPVARR
CHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
RSGPGVPPKQGSSN
CCCCCCCCCCCCCC
>Mature Secondary Structure
MNRYPIWKYVVMVVALAIGFLYTLPNFFGEAPAVQVSSGKATVKLGADTLAQVEAALKAN
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEECHHHHHHHHHHHHHC
QVAADDVTFDNSSANATIRVRLKDTDTQLRVKDMLQKTLNADPNDPQYVVALNLQSASPR
CCCCCCCEECCCCCCEEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCH
WLTALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDASDARTQLRDKGIRDGGVARV
HHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHH
DQTVVANFADQDTAEQARKLLASSVSELQWATQPGGGGYQVVGTFTPAVQKAVEEAALKQ
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHH
NLTTLHNRVNELGVSEPILQQQGNDRIVVELPGVQDTAKAKDIIGRTATLEARLADPLNT
HHHHHHHHHHHCCCCCHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCCEEHHHHCCCCCC
HPNPNDPVPPGEELFTQGNQAPVLLKKQVIFTGDRIIDASAGFDEHQRPSVNIRLDSAGG
CCCCCCCCCCCHHHHHCCCCCCEEEEEEEEEECCEEEECCCCCCCCCCCCEEEEEECCCC
RAVRAVSRENIGKPMAMVLFEKGKGEVLTVATIQSELGDRFQITGQPTPQAAADLALLLR
HHHHHHHHHCCCCCEEEEEEECCCCCEEEEEEEHHHCCCEEEECCCCCCHHHHHHHHHHH
AGSLAAPMDIIEERTIGPSLGADNIRMGFHSVIWGFVAIAVFMIAYYMLFGVVSVLGLSV
CCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERIREELRRGASPQIAIQEGY
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEECCH
AHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLGILTSMFSAVFFSRGLVNLWYG
HHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC
GRKKLQSLAIGQVWRPAAEAGTAPQLGQDARASAPQPGARVAAPKQPAGAPRTGKPVARR
CHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
RSGPGVPPKQGSSN
CCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]