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The map label for this gene is yeaM [H]

Identifier: 126442477

GI number: 126442477

Start: 994683

End: 995525

Strand: Reverse

Name: yeaM [H]

Synonym: BURPS668_A1029

Alternate gene names: 126442477

Gene position: 995525-994683 (Counterclockwise)

Preceding gene: 126444091

Following gene: 126445579

Centisome position: 31.83

GC content: 73.19

Gene sequence:

>843_bases
ATGCTCGATCCCATTCTTCCCATCGAACTCGTCACGTCTTCCGAAGGCCCGTTCGTCGCCGCCGTCGAATTGACGCAGCG
CACCGAGCGCACGACCGCGCGGCACAGCCACGCGCGCGGCCAGCTCGTCGGCGCGTCGAGCGGGCTCGTGTCGATCGGGC
TCGACGACGAAGACTGGGTCGTGCCCGCGATTCACGCGGTCTGGATTCCGCCGCACCGCGTGCATTCGCTGCGCTCGTTC
GGCCCGTTTGCCGGCTGGAGCGTCTTCGTCGCCGAAGACCGGTGCGCAGCGCTGCCGGGCGCGCCGCGCGCGATCGTCAT
GTCGACGCTGCTGCGCGAAGCCGTGCGCCGCGCGGCGAGCTGGCGCGGCGCCGCGCTCGATGCCGCGCGCGCGCGGATCG
CGAACGTGATACTCGACGAAATCGCCGCCGCGCAGACGGGGCCGCGCGGGCTGCCCCGCCCGCGCGATCCGCGCCTCAGG
CGGATCGCCGACGCGCTCGCGGGCGATCTCGCCGATAACCGCCGCGCCGACGAATGGGCCGCATGGGCCGGCATGGCCCC
GCGCACGCTGAGCCGCCGCTTCGTGTCGGAGACGGGATTCACCTTCACGCAATGGCGGCAGCAGGCGCGCGTGCTGCGCG
CGCTCGAGCGGCTCGCGGACGGCGTGACGGTGACGGCGGTCGCGCTCGATCTGGGCTACGACAACGTGAGCGCGTTCATC
GACATGTTCAGGAGAACGCTCGGCACGACGCCCGGGCAATACGTCAACGCGCGCGCCGGCGACGCGCGGGACGGCGCGCC
GGCTCCATGCGGTCCGCGCGCGGTCCGCGCGCGGCGTCAGTAA

Upstream 100 bases:

>100_bases
CAGCGCCCCGCGCGCCGTATCCACCGGACGTGAACGCAGTGTCGCCGTGCGCGCTTTGCCCGTCTCCGGTATAAAGGCCA
TTCGATACGGTATTCAGGCC

Downstream 100 bases:

>100_bases
GGGCTGTCGCCCGCGCGCGCCGCGCCGCCGGCCGCGGGCTTGAACTGCGCGGCAAGCCGCTCGGCGCCGCGCGCGAGCAG
CGTCGTGTCGACGCCGACCG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 280

Protein sequence:

>280_residues
MLDPILPIELVTSSEGPFVAAVELTQRTERTTARHSHARGQLVGASSGLVSIGLDDEDWVVPAIHAVWIPPHRVHSLRSF
GPFAGWSVFVAEDRCAALPGAPRAIVMSTLLREAVRRAASWRGAALDAARARIANVILDEIAAAQTGPRGLPRPRDPRLR
RIADALAGDLADNRRADEWAAWAGMAPRTLSRRFVSETGFTFTQWRQQARVLRALERLADGVTVTAVALDLGYDNVSAFI
DMFRRTLGTTPGQYVNARAGDARDGAPAPCGPRAVRARRQ

Sequences:

>Translated_280_residues
MLDPILPIELVTSSEGPFVAAVELTQRTERTTARHSHARGQLVGASSGLVSIGLDDEDWVVPAIHAVWIPPHRVHSLRSF
GPFAGWSVFVAEDRCAALPGAPRAIVMSTLLREAVRRAASWRGAALDAARARIANVILDEIAAAQTGPRGLPRPRDPRLR
RIADALAGDLADNRRADEWAAWAGMAPRTLSRRFVSETGFTFTQWRQQARVLRALERLADGVTVTAVALDLGYDNVSAFI
DMFRRTLGTTPGQYVNARAGDARDGAPAPCGPRAVRARRQ
>Mature_280_residues
MLDPILPIELVTSSEGPFVAAVELTQRTERTTARHSHARGQLVGASSGLVSIGLDDEDWVVPAIHAVWIPPHRVHSLRSF
GPFAGWSVFVAEDRCAALPGAPRAIVMSTLLREAVRRAASWRGAALDAARARIANVILDEIAAAQTGPRGLPRPRDPRLR
RIADALAGDLADNRRADEWAAWAGMAPRTLSRRFVSETGFTFTQWRQQARVLRALERLADGVTVTAVALDLGYDNVSAFI
DMFRRTLGTTPGQYVNARAGDARDGAPAPCGPRAVRARRQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=231, Percent_Identity=32.9004329004329, Blast_Score=125, Evalue=2e-30,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 30407; Mature: 30407

Theoretical pI: Translated: 11.46; Mature: 11.46

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDPILPIELVTSSEGPFVAAVELTQRTERTTARHSHARGQLVGASSGLVSIGLDDEDWV
CCCCCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCEEEECCCCEEEECCCCCCCE
VPAIHAVWIPPHRVHSLRSFGPFAGWSVFVAEDRCAALPGAPRAIVMSTLLREAVRRAAS
EHHHHEEECCHHHHHHHHHCCCCCCCEEEEECCCHHCCCCCCHHHHHHHHHHHHHHHHHH
WRGAALDAARARIANVILDEIAAAQTGPRGLPRPRDPRLRRIADALAGDLADNRRADEWA
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHH
AWAGMAPRTLSRRFVSETGFTFTQWRQQARVLRALERLADGVTVTAVALDLGYDNVSAFI
HHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHH
DMFRRTLGTTPGQYVNARAGDARDGAPAPCGPRAVRARRQ
HHHHHHHCCCCCCEEECCCCCCCCCCCCCCCHHHHHCCCC
>Mature Secondary Structure
MLDPILPIELVTSSEGPFVAAVELTQRTERTTARHSHARGQLVGASSGLVSIGLDDEDWV
CCCCCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCEEEECCCCEEEECCCCCCCE
VPAIHAVWIPPHRVHSLRSFGPFAGWSVFVAEDRCAALPGAPRAIVMSTLLREAVRRAAS
EHHHHEEECCHHHHHHHHHCCCCCCCEEEEECCCHHCCCCCCHHHHHHHHHHHHHHHHHH
WRGAALDAARARIANVILDEIAAAQTGPRGLPRPRDPRLRRIADALAGDLADNRRADEWA
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHH
AWAGMAPRTLSRRFVSETGFTFTQWRQQARVLRALERLADGVTVTAVALDLGYDNVSAFI
HHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHH
DMFRRTLGTTPGQYVNARAGDARDGAPAPCGPRAVRARRQ
HHHHHHHCCCCCCEEECCCCCCCCCCCCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]