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The map label for this gene is rseC [C]

Identifier: 126207880

GI number: 126207880

Start: 450532

End: 450960

Strand: Direct

Name: rseC [C]

Synonym: APL_0396

Alternate gene names: 126207880

Gene position: 450532-450960 (Clockwise)

Preceding gene: 126207879

Following gene: 126207881

Centisome position: 19.81

GC content: 38.93

Gene sequence:

>429_bases
ATGATGATTGAAACGGCTACCGTTGTGGACTACCAATCCGGTATCGCAACGGTACAATGTAGTGCAAAAAGTGCTTGTGG
AGGTTGCGCCGCCCGTAATAGTTGCGGTACGAAATCTTTATCGGCGCTTACCGGAGAAAAGTTTGCACCTCAATTCAAAT
TATCCGTAGATATGCCTTTGACAGTCGGAGATAAAGTACAAATCGGTTTGCCCGAACAAACTTTATTACTGAGTGTATTT
TTAATTTATTGTGTTCCATTGTTTGTGTTAGTTCTCTCTGCGGTCATTTTTTCTCAACTGTTTGCGAATGAGTTATTCGT
CGCATTGTTTATGTTGATAAGTGTAAGTATGACTTTTTGGAACATCAGAAGAATAATGTATAAAAAACGGGAAAGTGAGT
TCACACCTGTATTTTTGAGACGACTTTAA

Upstream 100 bases:

>100_bases
TTCTTCATATACGACCAGTTTAATATGGTTTGCAAAAGGAAAATACGGATTGCTTATTTTTGAGTAATCATAAAGCGTTC
AATGATATGAGGAAAATATA

Downstream 100 bases:

>100_bases
TAGGAGACAGTATGGAAAAAATTTGGTTACAAAATTATCCTGAAGGCTCACCGAAAACGATAAACGTTACACCTTACGAC
TCATTATTGGAAATGTTTGA

Product: putative sigma-E factor regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 142

Protein sequence:

>142_residues
MMIETATVVDYQSGIATVQCSAKSACGGCAARNSCGTKSLSALTGEKFAPQFKLSVDMPLTVGDKVQIGLPEQTLLLSVF
LIYCVPLFVLVLSAVIFSQLFANELFVALFMLISVSMTFWNIRRIMYKKRESEFTPVFLRRL

Sequences:

>Translated_142_residues
MMIETATVVDYQSGIATVQCSAKSACGGCAARNSCGTKSLSALTGEKFAPQFKLSVDMPLTVGDKVQIGLPEQTLLLSVF
LIYCVPLFVLVLSAVIFSQLFANELFVALFMLISVSMTFWNIRRIMYKKRESEFTPVFLRRL
>Mature_142_residues
MMIETATVVDYQSGIATVQCSAKSACGGCAARNSCGTKSLSALTGEKFAPQFKLSVDMPLTVGDKVQIGLPEQTLLLSVF
LIYCVPLFVLVLSAVIFSQLFANELFVALFMLISVSMTFWNIRRIMYKKRESEFTPVFLRRL

Specific function: Seems To Modulate The Activity Of Rpoe (Sigma-E). [C]

COG id: COG3086

COG function: function code T; Positive regulator of sigma E activity

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rseC family [H]

Homologues:

Organism=Escherichia coli, GI1788923, Length=145, Percent_Identity=36.551724137931, Blast_Score=79, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007359 [H]

Pfam domain/function: PF04246 RseC_MucC [H]

EC number: NA

Molecular weight: Translated: 15720; Mature: 15720

Theoretical pI: Translated: 8.76; Mature: 8.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
7.7 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
7.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMIETATVVDYQSGIATVQCSAKSACGGCAARNSCGTKSLSALTGEKFAPQFKLSVDMPL
CCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEEEEECCCC
TVGDKVQIGLPEQTLLLSVFLIYCVPLFVLVLSAVIFSQLFANELFVALFMLISVSMTFW
CCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NIRRIMYKKRESEFTPVFLRRL
HHHHHHHHHHCCCCCHHHHHCC
>Mature Secondary Structure
MMIETATVVDYQSGIATVQCSAKSACGGCAARNSCGTKSLSALTGEKFAPQFKLSVDMPL
CCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEEEEECCCC
TVGDKVQIGLPEQTLLLSVFLIYCVPLFVLVLSAVIFSQLFANELFVALFMLISVSMTFW
CCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NIRRIMYKKRESEFTPVFLRRL
HHHHHHHHHHCCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]