Click here to switch to the map view.

The map label for this gene is ygdL [C]

Identifier: 126207779

GI number: 126207779

Start: 327747

End: 328511

Strand: Direct

Name: ygdL [C]

Synonym: APL_0295

Alternate gene names: 126207779

Gene position: 327747-328511 (Clockwise)

Preceding gene: 126207778

Following gene: 126207781

Centisome position: 14.41

GC content: 42.61

Gene sequence:

>765_bases
ATGGCGAGAGTGGATAATTATGAACAACGTTTTGGCGGAATCGGGCGACTTTATACGCCGGAAGGTTTAGCAAAATTACG
TCAGTCACATATTTGTGTGATTGGGATTGGCGGTGTCGGTTCGTGGGCGGTGGAAGCGCTGGCTCGTTCGGGGATCGGTA
AAATTACTATGATTGATATGGACGATATTTGCGTAACTAATATCAACCGCCAAATTCATGCGATGACCGGTACGATTGCT
CAATTAAAAACCGAAGCGATGAAAGAACGTATTGAACGGATTAATCCTGAATGTGTGATAGAAATTATTGATGATTTTAT
TACACCTGAGAATATCCCCGAATATCTGAATCGTGGTTATGATTATGTGATTGATGCGATTGATTCGGTCAAAACTAAAG
CGGCTCTGATTGCCTATTGCAAACGTAACAAAATTAAAATGGTTACTACCGGCGGTGCGGGCGGTCAGACCGATCCGACC
CAAATTCAAATTACCGATTTAAGTAAAACGATTCAAGATCCGTTGGCGTCTAAAGTGCGCTCGTTATTGCGTAAGGAATA
TAACTTTAGTCAAAATCCAAAGCGTAAGTTTGGTATTGATTGTGTTTTCTCAACGCAACCGCTCATCTTTCCGAAAATGG
GCGAGGGCTGTGAGGTATCGGCAACGATGAATTGCGCAAACGGTTTCGGTGCGGTAACGATGGTAACCGCAACTTTCAGC
TTTTTTGCGGTAAGTAGAGTGATTGACAAGTTATTGAAATCGTAA

Upstream 100 bases:

>100_bases
CGCAAGCGCAATTACAAAAACTGGCTGATGCGGAAATGGCGTTAGAAGCCGCTTTTGAGCGCTGGGAAGTGTTAGAAAAT
ATCAAAAATGGGAATTCGTA

Downstream 100 bases:

>100_bases
TAAGCGGTCGGATTTTATTAAAGTTTTGGAAAATAAAAGCCTCTGAAAAATCTTCAGAGGCTTTTATATAAATGAATATT
AATGTTTTTGTTTCAAAGTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 253

Protein sequence:

>254_residues
MARVDNYEQRFGGIGRLYTPEGLAKLRQSHICVIGIGGVGSWAVEALARSGIGKITMIDMDDICVTNINRQIHAMTGTIA
QLKTEAMKERIERINPECVIEIIDDFITPENIPEYLNRGYDYVIDAIDSVKTKAALIAYCKRNKIKMVTTGGAGGQTDPT
QIQITDLSKTIQDPLASKVRSLLRKEYNFSQNPKRKFGIDCVFSTQPLIFPKMGEGCEVSATMNCANGFGAVTMVTATFS
FFAVSRVIDKLLKS

Sequences:

>Translated_254_residues
MARVDNYEQRFGGIGRLYTPEGLAKLRQSHICVIGIGGVGSWAVEALARSGIGKITMIDMDDICVTNINRQIHAMTGTIA
QLKTEAMKERIERINPECVIEIIDDFITPENIPEYLNRGYDYVIDAIDSVKTKAALIAYCKRNKIKMVTTGGAGGQTDPT
QIQITDLSKTIQDPLASKVRSLLRKEYNFSQNPKRKFGIDCVFSTQPLIFPKMGEGCEVSATMNCANGFGAVTMVTATFS
FFAVSRVIDKLLKS
>Mature_253_residues
ARVDNYEQRFGGIGRLYTPEGLAKLRQSHICVIGIGGVGSWAVEALARSGIGKITMIDMDDICVTNINRQIHAMTGTIAQ
LKTEAMKERIERINPECVIEIIDDFITPENIPEYLNRGYDYVIDAIDSVKTKAALIAYCKRNKIKMVTTGGAGGQTDPTQ
IQITDLSKTIQDPLASKVRSLLRKEYNFSQNPKRKFGIDCVFSTQPLIFPKMGEGCEVSATMNCANGFGAVTMVTATFSF
FAVSRVIDKLLKS

Specific function: Unknown

COG id: COG1179

COG function: function code H; Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hesA/moeB/thiF family [H]

Homologues:

Organism=Escherichia coli, GI1789177, Length=255, Percent_Identity=60, Blast_Score=334, Evalue=3e-93,
Organism=Escherichia coli, GI1787048, Length=136, Percent_Identity=28.6764705882353, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI87082356, Length=138, Percent_Identity=30.4347826086957, Blast_Score=75, Evalue=4e-15,
Organism=Saccharomyces cerevisiae, GI6321790, Length=191, Percent_Identity=31.413612565445, Blast_Score=104, Evalue=2e-23,
Organism=Saccharomyces cerevisiae, GI6322825, Length=164, Percent_Identity=32.9268292682927, Blast_Score=93, Evalue=4e-20,
Organism=Saccharomyces cerevisiae, GI6321903, Length=146, Percent_Identity=26.027397260274, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24582879, Length=235, Percent_Identity=25.1063829787234, Blast_Score=75, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009036
- InterPro:   IPR016040
- InterPro:   IPR000594 [H]

Pfam domain/function: PF00899 ThiF [H]

EC number: NA

Molecular weight: Translated: 28002; Mature: 27871

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARVDNYEQRFGGIGRLYTPEGLAKLRQSHICVIGIGGVGSWAVEALARSGIGKITMIDM
CCCCCCHHHHHCCCCCCCCCHHHHHHHHCCEEEEEECCCHHHHHHHHHHCCCCEEEEEEC
DDICVTNINRQIHAMTGTIAQLKTEAMKERIERINPECVIEIIDDFITPENIPEYLNRGY
CCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHCCH
DYVIDAIDSVKTKAALIAYCKRNKIKMVTTGGAGGQTDPTQIQITDLSKTIQDPLASKVR
HHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEHHHHHHHHHHHHHHH
SLLRKEYNFSQNPKRKFGIDCVFSTQPLIFPKMGEGCEVSATMNCANGFGAVTMVTATFS
HHHHHHCCCCCCCCHHHCCEEEECCCCEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHH
FFAVSRVIDKLLKS
HHHHHHHHHHHHCC
>Mature Secondary Structure 
ARVDNYEQRFGGIGRLYTPEGLAKLRQSHICVIGIGGVGSWAVEALARSGIGKITMIDM
CCCCCHHHHHCCCCCCCCCHHHHHHHHCCEEEEEECCCHHHHHHHHHHCCCCEEEEEEC
DDICVTNINRQIHAMTGTIAQLKTEAMKERIERINPECVIEIIDDFITPENIPEYLNRGY
CCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHCCH
DYVIDAIDSVKTKAALIAYCKRNKIKMVTTGGAGGQTDPTQIQITDLSKTIQDPLASKVR
HHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEHHHHHHHHHHHHHHH
SLLRKEYNFSQNPKRKFGIDCVFSTQPLIFPKMGEGCEVSATMNCANGFGAVTMVTATFS
HHHHHHCCCCCCCCHHHCCEEEECCCCEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHH
FFAVSRVIDKLLKS
HHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]