| Definition | Actinobacillus pleuropneumoniae serovar 5b str. L20 chromosome, complete genome. |
|---|---|
| Accession | NC_009053 |
| Length | 2,274,482 |
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The map label for this gene is ydbH [H]
Identifier: 126207667
GI number: 126207667
Start: 196507
End: 199203
Strand: Reverse
Name: ydbH [H]
Synonym: APL_0179
Alternate gene names: 126207667
Gene position: 199203-196507 (Counterclockwise)
Preceding gene: 126207668
Following gene: 126207666
Centisome position: 8.76
GC content: 42.79
Gene sequence:
>2697_bases TTGGTTGCACTGCTGATTGTCGGCGGTGCAACGCTGTTTTCAGGTAAGCAACTTGCAACGGTAAGCAACTGGTTTCTACC GGACGGCTGGCAAATTCAAACACCCGCCGGCGGTATTCAAGCGAATTTGGAAAATGCCCATTTAGCCAAATTTTCACTTA CCTATCAAAACTGCCCGTTAATTACGGTCGATAATCTTGCTGTGTATTGGCATAGTCAGCATCAAGTCTCAATTGATAAA GCGACCCTTGATTATCAATGTTTAACTCAATTACCCCCTTCGGACGAATCACCCTCTAAATTCTCGCTCGCCCCGATTTT AGCTTTGCTACCGGAAGGTGAGGCGGAAATTAAAGCGTTACATTGGCTGAATTTACCCAATGATCTTCATCCTCGCTTCT CTCAATTATTAGAAACACCAAGCTACGGCAAATTTACCTTTTTTCAGCAAAAATTGACCGCTTCCGTCCGCCAACAAGCG GTCGAATTAACTGCGGAATTTGCCAATCAAAGGCTTTCCGGCAATTTAAGCTATCAACCGAGCGAACAGGAAAAACACAA TCTACTGTTTTCCACTCACTTGAACCCGAAAGATTTACTTGCGATTCCGTCACAATTTGAAGGCGATTATCATTGGATTC TACCGAAAGAAATGATCGCAAATGAAGTGATTCGAGAAGGCAGTTCTTTACTTAGTTGGCAAACCGATGAACAAAATCAC TTGATCGGCGATTGGGCTTTCGCCTCCGAAACGGCTCCGCAAAATCGTTTAAATTTTCCATTCCGTTTTGATGGACAAAC CCTTGAAATTAAACAGGGTAAATTCTATTGGGATTGGTTGGAAGACTTTCCGCTACAAGGTTTTATCAATGCCAAACTCA CACCGAACAGCTTTGCAAACGGCGATTATTACCCGCTCAAAACCTATCTCCGTTTTAACTTGTTATCGCAAAGTAAAACC GCCGGTAAGGGGAATATCGTGTTGGAAAGTCGTGACGGCGAATTGCAAGCCGACGGCTTAAATATGCCGTTTCAAATTAC CGGTAACGTGAAATATGACGATTTTATTTTGTACAGCACCGTGCCGGTGGCATTTAGCGGTAAATTTAATGATCTGAATG TCAAGTTTCAGCCTAAGTCATTATTACGTTTAGTCGGTAAACAACGCTTACTGGCAATCCACGATTTACGTTTCCCGCTT GCCGGTATTCAGATTAACAAATATGGGGTAAACGGGCGGTTGCATGCGGTATTCAAAGGCGAAAGCCCCGATTTTAAAAA TATCAATCTACATTTGGACGGTTTTGCGAAGCACTTCAAAATCGGACAATTAGACTTTTTTGAAGATGCGCCGGATAACA ATGCGGTCAAAGATCTGTGGCAATGGAAAGTTTGGGGCGATACCAATATCCATACGATCGCCGGTAAACTCAAGATCAGC GGACGGGGTGATTGGCATCGGAATTTAGTCCGACTCAACGAATTAAACGGCGAATTAGGCAAAATTCATCAACAAGGCGT CTACATACCCAAAACCGAATTAAGCTTGCTTGAGCCGGTTAAATTCGCCTATCAAAAATGGCAATTGGACGGCGGCGTCC AAATTAAATCGCCGGAAATGCGTTTTGATTACGGCGGTATTATTCCCTCGCCGTCGGCAAAATTACAAGTAAACGGCGAA ATTGAAAACTTAAATCTAAAAGGCGAACTGCAAGCGGATAAGATCGAGCCGATTAAATTATTTGCCCGCCGTAAACTGGC TAAAACGGCAAGCGAATTAATCGGGCGACTCTATTGGCGAGAACAATCGGCAAAAGTGTTCCAACCGTTGATTCCGTTTC GCCGACATTGGCTAATTACCGACGGCACGGTACGAGGTGAAACCGCTTTCAGCGCAGGCATTGAAAAAGGTATTATTGCC GGCGGGCATTTTGCCATTCGCAACGCCTCGCTTTCTATGCCGAACGGTGAAGCGAAAGCGATTGAATTTAACCTGCCCTA TCGCTTACAAGACAATGAATTCGACTTCGGTTTGAAGCAACCGATTGATCTCAAAATCGGGCAGTTAAATCTTGGCTTAC CGATTGAGAAGATTCGGGTAAAAGTATTCGGGCATTATCCATATAGCCGTAAAAAGCCGTTAATGCTCCAACAGCTTTCG ATGAATTTATTAGACGGAGAATTGAATGTCGAGCGATTTGCCTTGCCGCAAACGCAAATCGCTTATTTAAAACTGGCGAA TATCAACTTCGAGCAGATTCTGGAATTGGTGCAATATCAGCAAATTGAATTAAAAGGCAAAGCGAATGCCACTTTACCGT TTTGGCTGGAGGGTAAACCTTGCTATGTATGTGACGGCTTACTCAGCCAAGCAGTCGAGTCCAATTTAAAAATTCAGCCC GAATTAATGAAGGCAATTTCGCAAACCAGCGGTTATTCGGAACGGTTATTGCTTTATCTATTGAACGATACGAAAATTAC CGATTTACGCGGTTTAATAAACGTCGGTTCAACCGGCGAAATGGTATTGGACGCCAAATTAAAAATGCAGCTCAATCAAC AAGAAAAAGCTAAAATCAACTTTAATTATAATCATAAAGAGAATATCTTTAACCTTTGGCATATGATCAACTCGGGTTCC TATGTCGAACAAAATCTTGAGAATTCTATTTATCAGCAACTGGATAAAAGAAAATGA
Upstream 100 bases:
>100_bases AAAACCCGCTCGGTTGGACGTTAGCCACTTTATTGGCAATGCTCTATCCGTTCACTAATATGATCTAATGCTAAAACGTA GCTTACTTGTTATAGGGACT
Downstream 100 bases:
>100_bases GAAAAAGCCTACTTTTTGCAATTTTTTGCCTGAATTTGACCGCTTGTACCCCGAAAGTACAGCTTGAAACACCGGCGGAA GGAATTACGATTAATATGAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 898; Mature: 898
Protein sequence:
>898_residues MVALLIVGGATLFSGKQLATVSNWFLPDGWQIQTPAGGIQANLENAHLAKFSLTYQNCPLITVDNLAVYWHSQHQVSIDK ATLDYQCLTQLPPSDESPSKFSLAPILALLPEGEAEIKALHWLNLPNDLHPRFSQLLETPSYGKFTFFQQKLTASVRQQA VELTAEFANQRLSGNLSYQPSEQEKHNLLFSTHLNPKDLLAIPSQFEGDYHWILPKEMIANEVIREGSSLLSWQTDEQNH LIGDWAFASETAPQNRLNFPFRFDGQTLEIKQGKFYWDWLEDFPLQGFINAKLTPNSFANGDYYPLKTYLRFNLLSQSKT AGKGNIVLESRDGELQADGLNMPFQITGNVKYDDFILYSTVPVAFSGKFNDLNVKFQPKSLLRLVGKQRLLAIHDLRFPL AGIQINKYGVNGRLHAVFKGESPDFKNINLHLDGFAKHFKIGQLDFFEDAPDNNAVKDLWQWKVWGDTNIHTIAGKLKIS GRGDWHRNLVRLNELNGELGKIHQQGVYIPKTELSLLEPVKFAYQKWQLDGGVQIKSPEMRFDYGGIIPSPSAKLQVNGE IENLNLKGELQADKIEPIKLFARRKLAKTASELIGRLYWREQSAKVFQPLIPFRRHWLITDGTVRGETAFSAGIEKGIIA GGHFAIRNASLSMPNGEAKAIEFNLPYRLQDNEFDFGLKQPIDLKIGQLNLGLPIEKIRVKVFGHYPYSRKKPLMLQQLS MNLLDGELNVERFALPQTQIAYLKLANINFEQILELVQYQQIELKGKANATLPFWLEGKPCYVCDGLLSQAVESNLKIQP ELMKAISQTSGYSERLLLYLLNDTKITDLRGLINVGSTGEMVLDAKLKMQLNQQEKAKINFNYNHKENIFNLWHMINSGS YVEQNLENSIYQQLDKRK
Sequences:
>Translated_898_residues MVALLIVGGATLFSGKQLATVSNWFLPDGWQIQTPAGGIQANLENAHLAKFSLTYQNCPLITVDNLAVYWHSQHQVSIDK ATLDYQCLTQLPPSDESPSKFSLAPILALLPEGEAEIKALHWLNLPNDLHPRFSQLLETPSYGKFTFFQQKLTASVRQQA VELTAEFANQRLSGNLSYQPSEQEKHNLLFSTHLNPKDLLAIPSQFEGDYHWILPKEMIANEVIREGSSLLSWQTDEQNH LIGDWAFASETAPQNRLNFPFRFDGQTLEIKQGKFYWDWLEDFPLQGFINAKLTPNSFANGDYYPLKTYLRFNLLSQSKT AGKGNIVLESRDGELQADGLNMPFQITGNVKYDDFILYSTVPVAFSGKFNDLNVKFQPKSLLRLVGKQRLLAIHDLRFPL AGIQINKYGVNGRLHAVFKGESPDFKNINLHLDGFAKHFKIGQLDFFEDAPDNNAVKDLWQWKVWGDTNIHTIAGKLKIS GRGDWHRNLVRLNELNGELGKIHQQGVYIPKTELSLLEPVKFAYQKWQLDGGVQIKSPEMRFDYGGIIPSPSAKLQVNGE IENLNLKGELQADKIEPIKLFARRKLAKTASELIGRLYWREQSAKVFQPLIPFRRHWLITDGTVRGETAFSAGIEKGIIA GGHFAIRNASLSMPNGEAKAIEFNLPYRLQDNEFDFGLKQPIDLKIGQLNLGLPIEKIRVKVFGHYPYSRKKPLMLQQLS MNLLDGELNVERFALPQTQIAYLKLANINFEQILELVQYQQIELKGKANATLPFWLEGKPCYVCDGLLSQAVESNLKIQP ELMKAISQTSGYSERLLLYLLNDTKITDLRGLINVGSTGEMVLDAKLKMQLNQQEKAKINFNYNHKENIFNLWHMINSGS YVEQNLENSIYQQLDKRK >Mature_898_residues MVALLIVGGATLFSGKQLATVSNWFLPDGWQIQTPAGGIQANLENAHLAKFSLTYQNCPLITVDNLAVYWHSQHQVSIDK ATLDYQCLTQLPPSDESPSKFSLAPILALLPEGEAEIKALHWLNLPNDLHPRFSQLLETPSYGKFTFFQQKLTASVRQQA VELTAEFANQRLSGNLSYQPSEQEKHNLLFSTHLNPKDLLAIPSQFEGDYHWILPKEMIANEVIREGSSLLSWQTDEQNH LIGDWAFASETAPQNRLNFPFRFDGQTLEIKQGKFYWDWLEDFPLQGFINAKLTPNSFANGDYYPLKTYLRFNLLSQSKT AGKGNIVLESRDGELQADGLNMPFQITGNVKYDDFILYSTVPVAFSGKFNDLNVKFQPKSLLRLVGKQRLLAIHDLRFPL AGIQINKYGVNGRLHAVFKGESPDFKNINLHLDGFAKHFKIGQLDFFEDAPDNNAVKDLWQWKVWGDTNIHTIAGKLKIS GRGDWHRNLVRLNELNGELGKIHQQGVYIPKTELSLLEPVKFAYQKWQLDGGVQIKSPEMRFDYGGIIPSPSAKLQVNGE IENLNLKGELQADKIEPIKLFARRKLAKTASELIGRLYWREQSAKVFQPLIPFRRHWLITDGTVRGETAFSAGIEKGIIA GGHFAIRNASLSMPNGEAKAIEFNLPYRLQDNEFDFGLKQPIDLKIGQLNLGLPIEKIRVKVFGHYPYSRKKPLMLQQLS MNLLDGELNVERFALPQTQIAYLKLANINFEQILELVQYQQIELKGKANATLPFWLEGKPCYVCDGLLSQAVESNLKIQP ELMKAISQTSGYSERLLLYLLNDTKITDLRGLINVGSTGEMVLDAKLKMQLNQQEKAKINFNYNHKENIFNLWHMINSGS YVEQNLENSIYQQLDKRK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1787646, Length=853, Percent_Identity=26.6119577960141, Blast_Score=311, Evalue=1e-85,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR021730 [H]
Pfam domain/function: PF11739 DctA-YdbH [H]
EC number: NA
Molecular weight: Translated: 102003; Mature: 102003
Theoretical pI: Translated: 8.04; Mature: 8.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVALLIVGGATLFSGKQLATVSNWFLPDGWQIQTPAGGIQANLENAHLAKFSLTYQNCPL CEEEEEECCCEEECCCEEEEEECCCCCCCCEEECCCCCEEECCCCCEEEEEEEEECCCCE ITVDNLAVYWHSQHQVSIDKATLDYQCLTQLPPSDESPSKFSLAPILALLPEGEAEIKAL EEECCEEEEEECCCEEEEECEECCHHHHHCCCCCCCCCCCEECCCHHEECCCCCHHEEEE HWLNLPNDLHPRFSQLLETPSYGKFTFFQQKLTASVRQQAVELTAEFANQRLSGNLSYQP EEECCCCCCCHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC SEQEKHNLLFSTHLNPKDLLAIPSQFEGDYHWILPKEMIANEVIREGSSLLSWQTDEQNH CCCCCCCEEEEECCCHHHEEECCCCCCCCEEEECCHHHHHHHHHHCCCHHEEEECCCCCC LIGDWAFASETAPQNRLNFPFRFDGQTLEIKQGKFYWDWLEDFPLQGFINAKLTPNSFAN EEEEEEECCCCCCCCCCCCCEEECCCEEEEECCCEEEEHHHCCCCCEEEEEEECCCCCCC GDYYPLKTYLRFNLLSQSKTAGKGNIVLESRDGELQADGLNMPFQITGNVKYDDFILYST CCEEEEEEEEEEEEHHCCCCCCCCCEEEECCCCCEEECCCCCCEEEECCCEECCEEEEEE VPVAFSGKFNDLNVKFQPKSLLRLVGKQRLLAIHDLRFPLAGIQINKYGVNGRLHAVFKG ECEEEECCCCCEEEEECHHHHHHHHCHHHEEEEEECCCCCCCEEEEEECCCCEEEEEEEC ESPDFKNINLHLDGFAKHFKIGQLDFFEDAPDNNAVKDLWQWKVWGDTNIHTIAGKLKIS CCCCCCEEEEEECCCHHHEECCCEECCCCCCCCCHHHHHHEEEEECCCCEEEEEEEEEEC GRGDWHRNLVRLNELNGELGKIHQQGVYIPKTELSLLEPVKFAYQKWQLDGGVQIKSPEM CCCCHHHHHEEEECCCCHHHHHHHCCEECCCCCHHHHHHHHHHHHHEECCCCEEECCCCC RFDYGGIIPSPSAKLQVNGEIENLNLKGELQADKIEPIKLFARRKLAKTASELIGRLYWR EEECCCCCCCCCCEEEECCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC EQSAKVFQPLIPFRRHWLITDGTVRGETAFSAGIEKGIIAGGHFAIRNASLSMPNGEAKA CCCHHHHHHHHCHHHEEEEECCEECCCHHHHCCCCCCEEECCCEEEEECEECCCCCCCEE IEFNLPYRLQDNEFDFGLKQPIDLKIGQLNLGLPIEKIRVKVFGHYPYSRKKPLMLQQLS EEEECCEEECCCCCCCCCCCCCCEEEEEEECCCCHHHEEEEEEECCCCCCCCCHHHHHHH MNLLDGELNVERFALPQTQIAYLKLANINFEQILELVQYQQIELKGKANATLPFWLEGKP HHHCCCCCCCCEEECCCCEEEEEEEECCCHHHHHHHHHHHEEEEECCCCCCEEEEECCCC CYVCDGLLSQAVESNLKIQPELMKAISQTSGYSERLLLYLLNDTKITDLRGLINVGSTGE EEEEHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCEEEHHHHHEECCCCCC MVLDAKLKMQLNQQEKAKINFNYNHKENIFNLWHMINSGSYVEQNLENSIYQQLDKRK EEEEEEEEEECCCCCCEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MVALLIVGGATLFSGKQLATVSNWFLPDGWQIQTPAGGIQANLENAHLAKFSLTYQNCPL CEEEEEECCCEEECCCEEEEEECCCCCCCCEEECCCCCEEECCCCCEEEEEEEEECCCCE ITVDNLAVYWHSQHQVSIDKATLDYQCLTQLPPSDESPSKFSLAPILALLPEGEAEIKAL EEECCEEEEEECCCEEEEECEECCHHHHHCCCCCCCCCCCEECCCHHEECCCCCHHEEEE HWLNLPNDLHPRFSQLLETPSYGKFTFFQQKLTASVRQQAVELTAEFANQRLSGNLSYQP EEECCCCCCCHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC SEQEKHNLLFSTHLNPKDLLAIPSQFEGDYHWILPKEMIANEVIREGSSLLSWQTDEQNH CCCCCCCEEEEECCCHHHEEECCCCCCCCEEEECCHHHHHHHHHHCCCHHEEEECCCCCC LIGDWAFASETAPQNRLNFPFRFDGQTLEIKQGKFYWDWLEDFPLQGFINAKLTPNSFAN EEEEEEECCCCCCCCCCCCCEEECCCEEEEECCCEEEEHHHCCCCCEEEEEEECCCCCCC GDYYPLKTYLRFNLLSQSKTAGKGNIVLESRDGELQADGLNMPFQITGNVKYDDFILYST CCEEEEEEEEEEEEHHCCCCCCCCCEEEECCCCCEEECCCCCCEEEECCCEECCEEEEEE VPVAFSGKFNDLNVKFQPKSLLRLVGKQRLLAIHDLRFPLAGIQINKYGVNGRLHAVFKG ECEEEECCCCCEEEEECHHHHHHHHCHHHEEEEEECCCCCCCEEEEEECCCCEEEEEEEC ESPDFKNINLHLDGFAKHFKIGQLDFFEDAPDNNAVKDLWQWKVWGDTNIHTIAGKLKIS CCCCCCEEEEEECCCHHHEECCCEECCCCCCCCCHHHHHHEEEEECCCCEEEEEEEEEEC GRGDWHRNLVRLNELNGELGKIHQQGVYIPKTELSLLEPVKFAYQKWQLDGGVQIKSPEM CCCCHHHHHEEEECCCCHHHHHHHCCEECCCCCHHHHHHHHHHHHHEECCCCEEECCCCC RFDYGGIIPSPSAKLQVNGEIENLNLKGELQADKIEPIKLFARRKLAKTASELIGRLYWR EEECCCCCCCCCCEEEECCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC EQSAKVFQPLIPFRRHWLITDGTVRGETAFSAGIEKGIIAGGHFAIRNASLSMPNGEAKA CCCHHHHHHHHCHHHEEEEECCEECCCHHHHCCCCCCEEECCCEEEEECEECCCCCCCEE IEFNLPYRLQDNEFDFGLKQPIDLKIGQLNLGLPIEKIRVKVFGHYPYSRKKPLMLQQLS EEEECCEEECCCCCCCCCCCCCCEEEEEEECCCCHHHEEEEEEECCCCCCCCCHHHHHHH MNLLDGELNVERFALPQTQIAYLKLANINFEQILELVQYQQIELKGKANATLPFWLEGKP HHHCCCCCCCCEEECCCCEEEEEEEECCCHHHHHHHHHHHEEEEECCCCCCEEEEECCCC CYVCDGLLSQAVESNLKIQPELMKAISQTSGYSERLLLYLLNDTKITDLRGLINVGSTGE EEEEHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCEEEHHHHHEECCCCCC MVLDAKLKMQLNQQEKAKINFNYNHKENIFNLWHMINSGSYVEQNLENSIYQQLDKRK EEEEEEEEEECCCCCCEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9097039; 9278503; 9025293 [H]