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The map label for this gene is rnfD

Identifier: 126207657

GI number: 126207657

Start: 187586

End: 188632

Strand: Direct

Name: rnfD

Synonym: APL_0169

Alternate gene names: 126207657

Gene position: 187586-188632 (Clockwise)

Preceding gene: 126207656

Following gene: 126207658

Centisome position: 8.25

GC content: 44.13

Gene sequence:

>1047_bases
ATGTTTAAAATGGTGAGTTCTCCCCATACCCATTCGTCCAATTTAACGGCGAAATTTATGCTATGGGTTATGGTTGCAAT
GTTACCCGCGTTGGGGATGCAAGCGTATTTTTTCGGTTATGGTGTTTTTATTCAAGTTTTTATCGCACTGTTGTTGGCGG
TAGCAATTGAAATCGCTATTGCAAAATTGCGTCGAAAACCGACCGCTTTTTATGTTGCGGATTTAAGCGGTGTATTAACT
GCGCTGATTTTAGCCATATCGATTCCGCCTTATGCGCCTTATTGGATCATTGTAATCGGGATCATTGTGGCGCTATTACT
GGCGAAGCATTCCTACGGCGGTTTAGGGCAGAATTTATTTAATCCGGCAATGGTTGCTTATGCGTTATTATTGGTTTCGT
TTCCGGTACAAATGACCGGCTGGCTTGTACCGATTGATTTATTAAACGAACCGCCGACATTCGGCGATGCTATTTCGTTA
GTGTTTTCCGGCGTAACCAGTGACGGCTTTAGCGTACATCAATTACTGGGCAGTGTGGACGGTATCGCACAAGCCACGCC
GCTCGACAGCGCCAAAACCAGTATGCAGAAATTAGGCGTAGAAGGCGTATTACAATCGCCGATTTTTAGCGGCTTGTTCG
CAAACGGTTGGTGGCAAATTAATTTGGCGTTTCTTGCCGGCGGTTTGTTGCTAATTTATAAACGCATTATTCACTGGCAA
ATTCCGGCGGCGATGTTAGGGATGTTTGCTTTATTGAGCGGGCTAACCGATTTATTGTTACCGCATACTCACTTAAATGT
CGTTAGCCAGCTTTTTAGCGGTGCAATGATGTTCGGCGCTTTCTTTATTGCAACAGATCCGGTTACTGCTTCGATTACGC
CTCGCGGTAAATTGATTTTCGGCGGTTTAATCGGTTTATTTGTGTACTTAATCCGTTATTACGGCAATTATCCGGATGCG
GTGGCGTTTTCGGTATTATTGGCAAATATTTGCGTGCCGTTAATTGACCATTACACTCAACCACGATTATATGGAAGCGG
AAGATAA

Upstream 100 bases:

>100_bases
GTGGATATTGCCACGGTCGCTACCGTGATTGTGATACGTTTATTAGCGATTCGATTTAATCTAAATTTACCGAGAATTTA
AACGGGAAAGGAATGATTTG

Downstream 100 bases:

>100_bases
TGAATACCTCAAAAATTACCGTTAAGTATGCGTTATTATTAGGCGCGATTGCGCTTATTTGCACTGCCGTTTCGACCGGT
GTTTATTTGCTTACTAAAGG

Product: electron transport complex protein RnfD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 348; Mature: 348

Protein sequence:

>348_residues
MFKMVSSPHTHSSNLTAKFMLWVMVAMLPALGMQAYFFGYGVFIQVFIALLLAVAIEIAIAKLRRKPTAFYVADLSGVLT
ALILAISIPPYAPYWIIVIGIIVALLLAKHSYGGLGQNLFNPAMVAYALLLVSFPVQMTGWLVPIDLLNEPPTFGDAISL
VFSGVTSDGFSVHQLLGSVDGIAQATPLDSAKTSMQKLGVEGVLQSPIFSGLFANGWWQINLAFLAGGLLLIYKRIIHWQ
IPAAMLGMFALLSGLTDLLLPHTHLNVVSQLFSGAMMFGAFFIATDPVTASITPRGKLIFGGLIGLFVYLIRYYGNYPDA
VAFSVLLANICVPLIDHYTQPRLYGSGR

Sequences:

>Translated_348_residues
MFKMVSSPHTHSSNLTAKFMLWVMVAMLPALGMQAYFFGYGVFIQVFIALLLAVAIEIAIAKLRRKPTAFYVADLSGVLT
ALILAISIPPYAPYWIIVIGIIVALLLAKHSYGGLGQNLFNPAMVAYALLLVSFPVQMTGWLVPIDLLNEPPTFGDAISL
VFSGVTSDGFSVHQLLGSVDGIAQATPLDSAKTSMQKLGVEGVLQSPIFSGLFANGWWQINLAFLAGGLLLIYKRIIHWQ
IPAAMLGMFALLSGLTDLLLPHTHLNVVSQLFSGAMMFGAFFIATDPVTASITPRGKLIFGGLIGLFVYLIRYYGNYPDA
VAFSVLLANICVPLIDHYTQPRLYGSGR
>Mature_348_residues
MFKMVSSPHTHSSNLTAKFMLWVMVAMLPALGMQAYFFGYGVFIQVFIALLLAVAIEIAIAKLRRKPTAFYVADLSGVLT
ALILAISIPPYAPYWIIVIGIIVALLLAKHSYGGLGQNLFNPAMVAYALLLVSFPVQMTGWLVPIDLLNEPPTFGDAISL
VFSGVTSDGFSVHQLLGSVDGIAQATPLDSAKTSMQKLGVEGVLQSPIFSGLFANGWWQINLAFLAGGLLLIYKRIIHWQ
IPAAMLGMFALLSGLTDLLLPHTHLNVVSQLFSGAMMFGAFFIATDPVTASITPRGKLIFGGLIGLFVYLIRYYGNYPDA
VAFSVLLANICVPLIDHYTQPRLYGSGR

Specific function: May be part of a membrane complex involved in electron transport

COG id: COG4658

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrB/rnfD family

Homologues:

Organism=Escherichia coli, GI1787917, Length=350, Percent_Identity=50.2857142857143, Blast_Score=342, Evalue=3e-95,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNFD_ACTP2 (A3MYP1)

Other databases:

- EMBL:   CP000569
- RefSeq:   YP_001052882.1
- STRING:   A3MYP1
- GeneID:   4849268
- GenomeReviews:   CP000569_GR
- KEGG:   apl:APL_0169
- eggNOG:   COG4658
- HOGENOM:   HBG454412
- OMA:   NPAMVAY
- PhylomeDB:   A3MYP1
- ProtClustDB:   PRK00816
- BioCyc:   APLE416269:APL_0169-MONOMER
- GO:   GO:0006810
- HAMAP:   MF_00462
- InterPro:   IPR011303
- InterPro:   IPR004338
- TIGRFAMs:   TIGR01946

Pfam domain/function: PF03116 NQR2_RnfD_RnfE

EC number: NA

Molecular weight: Translated: 37692; Mature: 37692

Theoretical pI: Translated: 9.10; Mature: 9.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1bab4e68)-; HASH(0x1bf20374)-; HASH(0x1b23bdd0)-; HASH(0x1bb2aa20)-; HASH(0x1c391dfc)-; HASH(0x1b02d778)-; HASH(0x1b97be94)-; HASH(0x1bf22768)-; HASH(0x1c1fcc0c)-; HASH(0x1afeafd8)-;

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKMVSSPHTHSSNLTAKFMLWVMVAMLPALGMQAYFFGYGVFIQVFIALLLAVAIEIAI
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AKLRRKPTAFYVADLSGVLTALILAISIPPYAPYWIIVIGIIVALLLAKHSYGGLGQNLF
HHHHCCCCEEEHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHC
NPAMVAYALLLVSFPVQMTGWLVPIDLLNEPPTFGDAISLVFSGVTSDGFSVHQLLGSVD
CHHHHHHHHHHHHCCHHHHCCEEEHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHH
GIAQATPLDSAKTSMQKLGVEGVLQSPIFSGLFANGWWQINLAFLAGGLLLIYKRIIHWQ
CHHHCCCCCHHHHHHHHHCHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHC
IPAAMLGMFALLSGLTDLLLPHTHLNVVSQLFSGAMMFGAFFIATDPVTASITPRGKLIF
CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHH
GGLIGLFVYLIRYYGNYPDAVAFSVLLANICVPLIDHYTQPRLYGSGR
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
>Mature Secondary Structure
MFKMVSSPHTHSSNLTAKFMLWVMVAMLPALGMQAYFFGYGVFIQVFIALLLAVAIEIAI
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AKLRRKPTAFYVADLSGVLTALILAISIPPYAPYWIIVIGIIVALLLAKHSYGGLGQNLF
HHHHCCCCEEEHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHC
NPAMVAYALLLVSFPVQMTGWLVPIDLLNEPPTFGDAISLVFSGVTSDGFSVHQLLGSVD
CHHHHHHHHHHHHCCHHHHCCEEEHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHH
GIAQATPLDSAKTSMQKLGVEGVLQSPIFSGLFANGWWQINLAFLAGGLLLIYKRIIHWQ
CHHHCCCCCHHHHHHHHHCHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHC
IPAAMLGMFALLSGLTDLLLPHTHLNVVSQLFSGAMMFGAFFIATDPVTASITPRGKLIF
CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHH
GGLIGLFVYLIRYYGNYPDAVAFSVLLANICVPLIDHYTQPRLYGSGR
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA