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The map label for this gene is ybjD [H]

Identifier: 126207632

GI number: 126207632

Start: 159936

End: 161495

Strand: Reverse

Name: ybjD [H]

Synonym: APL_0144

Alternate gene names: 126207632

Gene position: 161495-159936 (Counterclockwise)

Preceding gene: 126207633

Following gene: 126207627

Centisome position: 7.1

GC content: 42.18

Gene sequence:

>1560_bases
ATGTATTTACAACAAATTGAAATTTCGGGTTTTCGCGGCATTAATCATCTTTCTCTCACGCTACGCCCGAATATGGTCTT
GATTGGCGAAAATGCGTGGGGGAAATCCAGTTTGCTGGATGCGTTAAGCCATATTTTTAACGTTAAAGACGAACTTTACC
AATTTAGCGAACAGGATTTTCATTTAAGGGATCATCAACAAGCACAACCGATAAAATTGTGCTTTACTTTCTGTGAAGAG
GAAAACGAGACCTTCGGGCAAAATGAAGAAAATCATTATTACGATATTTTTCATTTAAACGATGCCGGATTACAGCACGT
TTATCTGCAAATTAGCGGTACGCTTACCGATCAGGGCGTAAAAACGGAATATCAGTTTTTAGACAGCCAAGGCGTTCGAT
TAGACATTGATAATCTGCAACAAGTGGTGCGTTCGGTCATTAGCCATACGCCGGTCTATCGTTTCCGTGATGCGCGCTTA
AACAAATTTGCAAATTTAGAGGCACTCTCTCAATCGGATAACTTGGCGCAAAGTGAGCTGGCGGATGAGCTTCGAGCGCT
TTCATTCCTATTAAAATATTACTTTTTAAGTACGCATACCAATAAACATCATCCGAATTCGATGTTGGATACCAGCCAAT
TATGGAATAAAGTCAAATCGCTGTGCCAGCGTTTAAAACAGAATAACGATCAACAACTGATACAACAAGTTCGCACGCAA
CTTTCTTCGCTCTTTGTGCTTAATCAAAAGCATAATCAAATTAAAACACCGATCATCTTATTTGAAGATCTCGAAGCTCG
TTTACATCCTCGTATGATTGCGATCTTTTGGGAATTGGTCACTTATCTGCCGGTACAACGCATTACCACTACCAATTCGA
TGGAATTGCTCTCGCAGGTACCGCTGCGCGAAATTAGCCGCTTAGTACGTTATCGGGATCGAACCGAGGCGTATTCGCTT
GCACGCAGTTCATTAGGCAAAGAAGATCTGCGCAAATTGACCTTCCACATTCACTACAATCGAGGTTTAGCATTATTTTC
TCGTGCGTGGATTTTAGTCGAAGGCGAAACGGAAGTTTGGATTCTAACCGAGCTGGCGAATTTACTGGATATTAATTTGG
AAATGGAAGGGATTCGGATTGTGGAATTTGCCCAATGCGGCTTACGTCCGTTAATTAAATACGCCAAAGCGATGGGCATT
GAATGGTATGTGCTGACCGACGGCGATCAAGCGGGCGAAAAATATGCCGATATTGCCAAAAGTATGCTGCAGGAAGACGA
ACACCCGAGCAAACGTTTGACCGTGATCCCACGCCAAGATATCGAGCATTTTTTCTATCACGAAGGACTTAGAGAAGTCT
TTGTACATCTTGCTCGTTGGCAACCGAGAGATCACAAATACCCGACAAAAACCATTATCAAACGCGCGATTCAGTACACC
TCCAAACCGGATTTGGCAATTGCGATTTCAAGCGAAATCAAACAACGAGGCAATCAAGCGATCCCTCGCTTATTTAAAAA
GCTGTTTATTAAAGTCTTGCGACTTATCAAAGAGCAATAA

Upstream 100 bases:

>100_bases
CTTGTTACAAACGTTTATTACTCAACACCGAATGAAATTGCCGACCGGAGAAGCTTATAAACCATGCTACCAAATTCTGC
CGAATACGGAGAAATAGGAT

Downstream 100 bases:

>100_bases
ATCACAAGCGGTTAAATTTACAAGATTTTTTGCAAATTTAACCGCTGGTCTGATTCAAACCCCGCTATGACTAACGTCGA
ATTTCAAAGTGTTCGAATTG

Product: ATP-dependent endonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 519; Mature: 519

Protein sequence:

>519_residues
MYLQQIEISGFRGINHLSLTLRPNMVLIGENAWGKSSLLDALSHIFNVKDELYQFSEQDFHLRDHQQAQPIKLCFTFCEE
ENETFGQNEENHYYDIFHLNDAGLQHVYLQISGTLTDQGVKTEYQFLDSQGVRLDIDNLQQVVRSVISHTPVYRFRDARL
NKFANLEALSQSDNLAQSELADELRALSFLLKYYFLSTHTNKHHPNSMLDTSQLWNKVKSLCQRLKQNNDQQLIQQVRTQ
LSSLFVLNQKHNQIKTPIILFEDLEARLHPRMIAIFWELVTYLPVQRITTTNSMELLSQVPLREISRLVRYRDRTEAYSL
ARSSLGKEDLRKLTFHIHYNRGLALFSRAWILVEGETEVWILTELANLLDINLEMEGIRIVEFAQCGLRPLIKYAKAMGI
EWYVLTDGDQAGEKYADIAKSMLQEDEHPSKRLTVIPRQDIEHFFYHEGLREVFVHLARWQPRDHKYPTKTIIKRAIQYT
SKPDLAIAISSEIKQRGNQAIPRLFKKLFIKVLRLIKEQ

Sequences:

>Translated_519_residues
MYLQQIEISGFRGINHLSLTLRPNMVLIGENAWGKSSLLDALSHIFNVKDELYQFSEQDFHLRDHQQAQPIKLCFTFCEE
ENETFGQNEENHYYDIFHLNDAGLQHVYLQISGTLTDQGVKTEYQFLDSQGVRLDIDNLQQVVRSVISHTPVYRFRDARL
NKFANLEALSQSDNLAQSELADELRALSFLLKYYFLSTHTNKHHPNSMLDTSQLWNKVKSLCQRLKQNNDQQLIQQVRTQ
LSSLFVLNQKHNQIKTPIILFEDLEARLHPRMIAIFWELVTYLPVQRITTTNSMELLSQVPLREISRLVRYRDRTEAYSL
ARSSLGKEDLRKLTFHIHYNRGLALFSRAWILVEGETEVWILTELANLLDINLEMEGIRIVEFAQCGLRPLIKYAKAMGI
EWYVLTDGDQAGEKYADIAKSMLQEDEHPSKRLTVIPRQDIEHFFYHEGLREVFVHLARWQPRDHKYPTKTIIKRAIQYT
SKPDLAIAISSEIKQRGNQAIPRLFKKLFIKVLRLIKEQ
>Mature_519_residues
MYLQQIEISGFRGINHLSLTLRPNMVLIGENAWGKSSLLDALSHIFNVKDELYQFSEQDFHLRDHQQAQPIKLCFTFCEE
ENETFGQNEENHYYDIFHLNDAGLQHVYLQISGTLTDQGVKTEYQFLDSQGVRLDIDNLQQVVRSVISHTPVYRFRDARL
NKFANLEALSQSDNLAQSELADELRALSFLLKYYFLSTHTNKHHPNSMLDTSQLWNKVKSLCQRLKQNNDQQLIQQVRTQ
LSSLFVLNQKHNQIKTPIILFEDLEARLHPRMIAIFWELVTYLPVQRITTTNSMELLSQVPLREISRLVRYRDRTEAYSL
ARSSLGKEDLRKLTFHIHYNRGLALFSRAWILVEGETEVWILTELANLLDINLEMEGIRIVEFAQCGLRPLIKYAKAMGI
EWYVLTDGDQAGEKYADIAKSMLQEDEHPSKRLTVIPRQDIEHFFYHEGLREVFVHLARWQPRDHKYPTKTIIKRAIQYT
SKPDLAIAISSEIKQRGNQAIPRLFKKLFIKVLRLIKEQ

Specific function: Unknown

COG id: COG3593

COG function: function code L; Predicted ATP-dependent endonuclease of the OLD family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787102, Length=571, Percent_Identity=35.9019264448336, Blast_Score=325, Evalue=6e-90,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022602 [H]

Pfam domain/function: PF11398 DUF2813 [H]

EC number: NA

Molecular weight: Translated: 60768; Mature: 60768

Theoretical pI: Translated: 7.57; Mature: 7.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYLQQIEISGFRGINHLSLTLRPNMVLIGENAWGKSSLLDALSHIFNVKDELYQFSEQDF
CCCEEEECCCCCCCCEEEEEEECCEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHCCCCC
HLRDHQQAQPIKLCFTFCEEENETFGQNEENHYYDIFHLNDAGLQHVYLQISGTLTDQGV
CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCC
KTEYQFLDSQGVRLDIDNLQQVVRSVISHTPVYRFRDARLNKFANLEALSQSDNLAQSEL
CHHHHHHCCCCCEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCHHHHCCCCCHHHHHH
ADELRALSFLLKYYFLSTHTNKHHPNSMLDTSQLWNKVKSLCQRLKQNNDQQLIQQVRTQ
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
LSSLFVLNQKHNQIKTPIILFEDLEARLHPRMIAIFWELVTYLPVQRITTTNSMELLSQV
HHHHHHCCCCCCCCCCCEEEEECHHHHHCHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHC
PLREISRLVRYRDRTEAYSLARSSLGKEDLRKLTFHIHYNRGLALFSRAWILVEGETEVW
CHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHEEEEEEECCCCEEEECEEEEEECCCCEE
ILTELANLLDINLEMEGIRIVEFAQCGLRPLIKYAKAMGIEWYVLTDGDQAGEKYADIAK
EHHHHHHHHCCCEEECCEEEHHHHHHCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHH
SMLQEDEHPSKRLTVIPRQDIEHFFYHEGLREVFVHLARWQPRDHKYPTKTIIKRAIQYT
HHHHCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHC
SKPDLAIAISSEIKQRGNQAIPRLFKKLFIKVLRLIKEQ
CCCCEEEEECHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MYLQQIEISGFRGINHLSLTLRPNMVLIGENAWGKSSLLDALSHIFNVKDELYQFSEQDF
CCCEEEECCCCCCCCEEEEEEECCEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHCCCCC
HLRDHQQAQPIKLCFTFCEEENETFGQNEENHYYDIFHLNDAGLQHVYLQISGTLTDQGV
CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCC
KTEYQFLDSQGVRLDIDNLQQVVRSVISHTPVYRFRDARLNKFANLEALSQSDNLAQSEL
CHHHHHHCCCCCEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCHHHHCCCCCHHHHHH
ADELRALSFLLKYYFLSTHTNKHHPNSMLDTSQLWNKVKSLCQRLKQNNDQQLIQQVRTQ
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
LSSLFVLNQKHNQIKTPIILFEDLEARLHPRMIAIFWELVTYLPVQRITTTNSMELLSQV
HHHHHHCCCCCCCCCCCEEEEECHHHHHCHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHC
PLREISRLVRYRDRTEAYSLARSSLGKEDLRKLTFHIHYNRGLALFSRAWILVEGETEVW
CHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHEEEEEEECCCCEEEECEEEEEECCCCEE
ILTELANLLDINLEMEGIRIVEFAQCGLRPLIKYAKAMGIEWYVLTDGDQAGEKYADIAK
EHHHHHHHHCCCEEECCEEEHHHHHHCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHH
SMLQEDEHPSKRLTVIPRQDIEHFFYHEGLREVFVHLARWQPRDHKYPTKTIIKRAIQYT
HHHHCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHC
SKPDLAIAISSEIKQRGNQAIPRLFKKLFIKVLRLIKEQ
CCCCEEEEECHHHHHCCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]