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The map label for this gene is ycfN [C]

Identifier: 126207612

GI number: 126207612

Start: 141240

End: 141989

Strand: Reverse

Name: ycfN [C]

Synonym: APL_0124

Alternate gene names: 126207612

Gene position: 141989-141240 (Counterclockwise)

Preceding gene: 126207613

Following gene: 126207606

Centisome position: 6.24

GC content: 38.4

Gene sequence:

>750_bases
ATGAATGCACTTGATTGGCTTGAAAGCCAACAACAAGCGGTCGTTTTTTGCAAAAATTTAGCAGGTTTGACCGCTTGCAG
CCAACAGATTCAGCTCGCCTCCGGCGAGCGATTTGTTTTACGCCAACAAAATGATCGAGCGACAACTTTCGGGATCAATT
ACACTCAAGAAGTACAAATTTTACGCTATCTAACACGCTTAACTTTCACTCCAAAAGTCTATTACCACAATGAAAATTCC
AGTTTATTGACTTGGATTGAAGGTAATACAGCTAACTGTTTCAGTTCATCATTATTAAACAAACTGGCATTGCAACTTGC
CGAATTACATCTTTTTCCAATTACCGAATCATTACCAAAGCTCGATCTTGCCAAGCGTTGTCAATTTTTATGGCAAAAAC
TCCCTGTTACAAAACAAGCGACATTGAGATTTCGCCCTCCATTTCAAACGATTCAACCTTTCACATTAGCAATCTGCCAC
CATGATTTGCATTTAGGTAATTTTATTGAAAAAAATGACCGCTTGTATTTGATTGACTGGGAATATAGTGCCGTGTCGGA
TCCTGCATTAGAGATTGCGATGCTTTTCAGTGCCAATCCTGCAATCAACCAACAGCAACAGACCGAATTTCTCCGTATAT
ATCTGCAAGAAACACAATTCAATGAAGGGAAATTTAAACGAAAAATGGCAGAATATCATTCTGCCATTTATCAGTTAAAT
CAATTATGGTTTACGATTCTCGAGCCATAA

Upstream 100 bases:

>100_bases
GGTTGAGTTTATGGCTAAATGGTAAACAGTCACAAACACTTTCACTTGAAAAACCAACCGCTGAAAGCAGCAATTATCGT
ATCTATTTACGTGGTAACCG

Downstream 100 bases:

>100_bases
AACTATTTTAAGAACGGATTATGCTGTTTCTCACGCCCAATTGTAGTATGAGGACCATGACCCGCAACTACAATAAAATC
ATCGTCCAAATCGAACATCT

Product: hypothetical protein

Products: NA

Alternate protein names: Phosphotransferase/Kinase; Choline Kinase Involved In LPS Biosynthesis

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MNALDWLESQQQAVVFCKNLAGLTACSQQIQLASGERFVLRQQNDRATTFGINYTQEVQILRYLTRLTFTPKVYYHNENS
SLLTWIEGNTANCFSSSLLNKLALQLAELHLFPITESLPKLDLAKRCQFLWQKLPVTKQATLRFRPPFQTIQPFTLAICH
HDLHLGNFIEKNDRLYLIDWEYSAVSDPALEIAMLFSANPAINQQQQTEFLRIYLQETQFNEGKFKRKMAEYHSAIYQLN
QLWFTILEP

Sequences:

>Translated_249_residues
MNALDWLESQQQAVVFCKNLAGLTACSQQIQLASGERFVLRQQNDRATTFGINYTQEVQILRYLTRLTFTPKVYYHNENS
SLLTWIEGNTANCFSSSLLNKLALQLAELHLFPITESLPKLDLAKRCQFLWQKLPVTKQATLRFRPPFQTIQPFTLAICH
HDLHLGNFIEKNDRLYLIDWEYSAVSDPALEIAMLFSANPAINQQQQTEFLRIYLQETQFNEGKFKRKMAEYHSAIYQLN
QLWFTILEP
>Mature_249_residues
MNALDWLESQQQAVVFCKNLAGLTACSQQIQLASGERFVLRQQNDRATTFGINYTQEVQILRYLTRLTFTPKVYYHNENS
SLLTWIEGNTANCFSSSLLNKLALQLAELHLFPITESLPKLDLAKRCQFLWQKLPVTKQATLRFRPPFQTIQPFTLAICH
HDLHLGNFIEKNDRLYLIDWEYSAVSDPALEIAMLFSANPAINQQQQTEFLRIYLQETQFNEGKFKRKMAEYHSAIYQLN
QLWFTILEP

Specific function: Unknown

COG id: COG0510

COG function: function code M; Predicted choline kinase involved in LPS biosynthesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29029; Mature: 29029

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNALDWLESQQQAVVFCKNLAGLTACSQQIQLASGERFVLRQQNDRATTFGINYTQEVQI
CCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEECCCCHHHHHH
LRYLTRLTFTPKVYYHNENSSLLTWIEGNTANCFSSSLLNKLALQLAELHLFPITESLPK
HHHHHHHCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHEECCCCCCCC
LDLAKRCQFLWQKLPVTKQATLRFRPPFQTIQPFTLAICHHDLHLGNFIEKNDRLYLIDW
CCHHHHHHHHHHHCCCCCCCEEEECCCCHHHCCCEEEEEHHHHHHCCCCCCCCEEEEEEE
EYSAVSDPALEIAMLFSANPAINQQQQTEFLRIYLQETQFNEGKFKRKMAEYHSAIYQLN
CCCCCCCCHHEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
QLWFTILEP
HHHEEEECC
>Mature Secondary Structure
MNALDWLESQQQAVVFCKNLAGLTACSQQIQLASGERFVLRQQNDRATTFGINYTQEVQI
CCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEECCCCHHHHHH
LRYLTRLTFTPKVYYHNENSSLLTWIEGNTANCFSSSLLNKLALQLAELHLFPITESLPK
HHHHHHHCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHEECCCCCCCC
LDLAKRCQFLWQKLPVTKQATLRFRPPFQTIQPFTLAICHHDLHLGNFIEKNDRLYLIDW
CCHHHHHHHHHHHCCCCCCCEEEECCCCHHHCCCEEEEEHHHHHHCCCCCCCCEEEEEEE
EYSAVSDPALEIAMLFSANPAINQQQQTEFLRIYLQETQFNEGKFKRKMAEYHSAIYQLN
CCCCCCCCHHEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
QLWFTILEP
HHHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA