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The map label for this gene is cspC [H]

Identifier: 126207606

GI number: 126207606

Start: 134978

End: 135187

Strand: Reverse

Name: cspC [H]

Synonym: APL_0118

Alternate gene names: 126207606

Gene position: 135187-134978 (Counterclockwise)

Preceding gene: 126207612

Following gene: 126207603

Centisome position: 5.94

GC content: 39.05

Gene sequence:

>210_bases
ATGTCTAAAGCAACAGGTATCGTTAAATGGTTCAATTCAACTAAAGGTTTCGGTTTTATCACTCCGGATCAAGGCGGTAA
AGATATTTTCGTTCACTTCTCAGGTATCGTTGGTTCAAACTTCCGTACGTTAGAAGAAGGTGCAAAAGTTGAATTTGAAG
TTCAAGATTCAGAGCGCGGTCCTTCAGCGGTAAACGTAAAAACACTTTAA

Upstream 100 bases:

>100_bases
TAAATCTTCTGATTTTCTGAGAGTTCTTCGCGAATAAATCTCTAATCTCCAAACAAACGTGCAGCAATTCTTTTCATCAA
ATTTTTATAAGGAAAATCCT

Downstream 100 bases:

>100_bases
TTTTAAACGTGTATATAAAGAATCTAAAAGCCAGCAAATGCTGGCTTTTTTCATTCCTTCGGACTAAGCGTCGCTAGGCT
CATACGCCAGCGGATACAAA

Product: cold shock-like protein CspC

Products: NA

Alternate protein names: CSP-C [H]

Number of amino acids: Translated: 69; Mature: 68

Protein sequence:

>69_residues
MSKATGIVKWFNSTKGFGFITPDQGGKDIFVHFSGIVGSNFRTLEEGAKVEFEVQDSERGPSAVNVKTL

Sequences:

>Translated_69_residues
MSKATGIVKWFNSTKGFGFITPDQGGKDIFVHFSGIVGSNFRTLEEGAKVEFEVQDSERGPSAVNVKTL
>Mature_68_residues
SKATGIVKWFNSTKGFGFITPDQGGKDIFVHFSGIVGSNFRTLEEGAKVEFEVQDSERGPSAVNVKTL

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1788126, Length=69, Percent_Identity=62.3188405797101, Blast_Score=96, Evalue=6e-22,
Organism=Escherichia coli, GI2367114, Length=68, Percent_Identity=61.7647058823529, Blast_Score=95, Evalue=8e-22,
Organism=Escherichia coli, GI1786841, Length=69, Percent_Identity=60.8695652173913, Blast_Score=90, Evalue=3e-20,
Organism=Escherichia coli, GI1789979, Length=67, Percent_Identity=58.2089552238806, Blast_Score=88, Evalue=1e-19,
Organism=Escherichia coli, GI1787839, Length=65, Percent_Identity=58.4615384615385, Blast_Score=85, Evalue=8e-19,
Organism=Escherichia coli, GI1787834, Length=68, Percent_Identity=55.8823529411765, Blast_Score=84, Evalue=1e-18,
Organism=Escherichia coli, GI1787107, Length=58, Percent_Identity=51.7241379310345, Blast_Score=67, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24658520, Length=63, Percent_Identity=50.7936507936508, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: 8300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7496; Mature: 7364

Theoretical pI: Translated: 7.55; Mature: 7.55

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKATGIVKWFNSTKGFGFITPDQGGKDIFVHFSGIVGSNFRTLEEGAKVEFEVQDSERG
CCCCCCEEEECCCCCCCEEECCCCCCCEEEEEEECEECCCCEECCCCCEEEEEECCCCCC
PSAVNVKTL
CCEEEEEEC
>Mature Secondary Structure 
SKATGIVKWFNSTKGFGFITPDQGGKDIFVHFSGIVGSNFRTLEEGAKVEFEVQDSERG
CCCCCEEEECCCCCCCEEECCCCCCCEEEEEEECEECCCCEECCCCCEEEEEECCCCCC
PSAVNVKTL
CCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10993077 [H]