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The map label for this gene is ygfZ [C]

Identifier: 126207545

GI number: 126207545

Start: 62916

End: 63803

Strand: Direct

Name: ygfZ [C]

Synonym: APL_0057

Alternate gene names: 126207545

Gene position: 62916-63803 (Clockwise)

Preceding gene: 126207544

Following gene: 126207548

Centisome position: 2.77

GC content: 41.78

Gene sequence:

>888_bases
ATGACGTGTGAATGTAGCAAAATCAGTAATAGCCATCCAAATCTCTGCGTGCAACTTTCTCAGTATCGTTTAATTGAAAT
TGCAGGTGTGGATGCTGAGAAATATCTTCAAGGACAATTAACCTGTGATGTAGCGAAATTGGCAGAGGGTGAGCATACCT
TAACCTGCCATTGTGATCCGAAAGGCAAAATGAGTGCGTTAATCCGTTTATATCGTCAAGCGGCAGATAAATTTATCGCC
ATGATTCATGCGGATTTATTACCGGAAGCGCTTAACCAACTAAAAAAATATGCGGTGTTTTCTAAAGTCACTTTCACTGA
GCTGGATACACCGATTTATGGCGTAACAAGCGGTGAGATTTTGGCAAAACTTTGCGAAAATACGACCGCTTTAGTCATTC
CGCAAGGGCAAAAACGTGCAATTGTTTGGGGTGAAACACTAGAAACCAATGCCGATAGCCAATTGTGGGATTTAATCGAT
ATTCAAGACGGCATTCCGATGTTACTAAAGGCGAATCAATTTGAATTGATTCCGCAGGCAACCAATTTACAAGCGGTCGA
AAACGCGATTTCTTTTAGCAAAGGTTGCTATATCGGGCAAGAAACGGTAGCGCGTGCAAAATATCGTGGTGCGAATAAGC
GTGCGATGTTTACGTTAGTCGGTAAATTTGATGGTGAGGTGAGTTTACCGGAGATTGGCGGCTCGGTTGAAATGCAGTTC
GGTGAAAATTGGCGTGCAACCGGCACAATCTTAAATAGCGTGGCATATCAAAATAAACTTTGGTTGCAAGTGGTAATGAA
TAATGATGTTGAAGCGGATAGCGCATTTAGAATCAACGGAGTTCCATTAGCAATTTGCGATTTGCCTTATAGCTTTAAAG
ACGCATAA

Upstream 100 bases:

>100_bases
CAAAATCTATTAATGCGGACGTAACCAATTCAGCGGTTGAATTAAAAGTATTAATCGAACAAATGCGTGAGCAAATTCAG
AATTTAGAGTAGGTGTTTTT

Downstream 100 bases:

>100_bases
CAAAAAACGGAGAATGAAGGTTCATTCTCCGTTTTTTTACGTTTTATTTTTATATTTTATCCGGGTGATGAATCATCACA
AATCTTTCCCATAACTCTTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 294

Protein sequence:

>295_residues
MTCECSKISNSHPNLCVQLSQYRLIEIAGVDAEKYLQGQLTCDVAKLAEGEHTLTCHCDPKGKMSALIRLYRQAADKFIA
MIHADLLPEALNQLKKYAVFSKVTFTELDTPIYGVTSGEILAKLCENTTALVIPQGQKRAIVWGETLETNADSQLWDLID
IQDGIPMLLKANQFELIPQATNLQAVENAISFSKGCYIGQETVARAKYRGANKRAMFTLVGKFDGEVSLPEIGGSVEMQF
GENWRATGTILNSVAYQNKLWLQVVMNNDVEADSAFRINGVPLAICDLPYSFKDA

Sequences:

>Translated_295_residues
MTCECSKISNSHPNLCVQLSQYRLIEIAGVDAEKYLQGQLTCDVAKLAEGEHTLTCHCDPKGKMSALIRLYRQAADKFIA
MIHADLLPEALNQLKKYAVFSKVTFTELDTPIYGVTSGEILAKLCENTTALVIPQGQKRAIVWGETLETNADSQLWDLID
IQDGIPMLLKANQFELIPQATNLQAVENAISFSKGCYIGQETVARAKYRGANKRAMFTLVGKFDGEVSLPEIGGSVEMQF
GENWRATGTILNSVAYQNKLWLQVVMNNDVEADSAFRINGVPLAICDLPYSFKDA
>Mature_294_residues
TCECSKISNSHPNLCVQLSQYRLIEIAGVDAEKYLQGQLTCDVAKLAEGEHTLTCHCDPKGKMSALIRLYRQAADKFIAM
IHADLLPEALNQLKKYAVFSKVTFTELDTPIYGVTSGEILAKLCENTTALVIPQGQKRAIVWGETLETNADSQLWDLIDI
QDGIPMLLKANQFELIPQATNLQAVENAISFSKGCYIGQETVARAKYRGANKRAMFTLVGKFDGEVSLPEIGGSVEMQFG
ENWRATGTILNSVAYQNKLWLQVVMNNDVEADSAFRINGVPLAICDLPYSFKDA

Specific function: Unknown

COG id: COG0354

COG function: function code R; Predicted aminomethyltransferase related to GcvT

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ygfZ (UP14) and B.aphidicola (subsp. Acyrthosiphon pisum) BU435 [H]

Homologues:

Organism=Escherichia coli, GI1789265, Length=316, Percent_Identity=41.1392405063291, Blast_Score=198, Evalue=4e-52,

Paralogues:

None

Copy number: 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017703
- InterPro:   IPR006222 [H]

Pfam domain/function: PF01571 GCV_T [H]

EC number: NA

Molecular weight: Translated: 32578; Mature: 32447

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTCECSKISNSHPNLCVQLSQYRLIEIAGVDAEKYLQGQLTCDVAKLAEGEHTLTCHCDP
CCCCCCCCCCCCCCEEEEECCEEEEEEECCCHHHHHCCCEEEEHHHHCCCCEEEEEEECC
KGKMSALIRLYRQAADKFIAMIHADLLPEALNQLKKYAVFSKVTFTELDTPIYGVTSGEI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCEEECCCHHH
LAKLCENTTALVIPQGQKRAIVWGETLETNADSQLWDLIDIQDGIPMLLKANQFELIPQA
HHHHHCCCEEEEEECCCCEEEEECCCCCCCCCCHHEEEEECCCCCCEEEECCCEEECCCC
TNLQAVENAISFSKGCYIGQETVARAKYRGANKRAMFTLVGKFDGEVSLPEIGGSVEMQF
CCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCEEEEEEEECCCCCEECCCCCCEEEEEE
GENWRATGTILNSVAYQNKLWLQVVMNNDVEADSAFRINGVPLAICDLPYSFKDA
CCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCEEEECCCEEEEECCCCCCCCC
>Mature Secondary Structure 
TCECSKISNSHPNLCVQLSQYRLIEIAGVDAEKYLQGQLTCDVAKLAEGEHTLTCHCDP
CCCCCCCCCCCCCEEEEECCEEEEEEECCCHHHHHCCCEEEEHHHHCCCCEEEEEEECC
KGKMSALIRLYRQAADKFIAMIHADLLPEALNQLKKYAVFSKVTFTELDTPIYGVTSGEI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCEEECCCHHH
LAKLCENTTALVIPQGQKRAIVWGETLETNADSQLWDLIDIQDGIPMLLKANQFELIPQA
HHHHHCCCEEEEEECCCCEEEEECCCCCCCCCCHHEEEEECCCCCCEEEECCCEEECCCC
TNLQAVENAISFSKGCYIGQETVARAKYRGANKRAMFTLVGKFDGEVSLPEIGGSVEMQF
CCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCEEEEEEEECCCCCEECCCCCCEEEEEE
GENWRATGTILNSVAYQNKLWLQVVMNNDVEADSAFRINGVPLAICDLPYSFKDA
CCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCEEEECCCEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]