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The map label for this gene is yhcM [H]

Identifier: 126175636

GI number: 126175636

Start: 4030802

End: 4032097

Strand: Direct

Name: yhcM [H]

Synonym: Sbal_3439

Alternate gene names: 126175636

Gene position: 4030802-4032097 (Clockwise)

Preceding gene: 126175627

Following gene: 126175637

Centisome position: 78.61

GC content: 48.84

Gene sequence:

>1296_bases
ATGGCTCATTCAAACTCCGCTAGCTCGCAATCGATAACGCCAATGATGACGCCACTGGAAGTGTATCGCGCCAAAGTGAG
CGAAAATCTAGTTGACGATCCGGCGCAGCAACAGGCGGTGTTGGCGCTCGATATGTTATTTAAACAGTTGATGCCACAAG
CCTATTCAGCTCGCCTGTCCCATTCACAATCCATCAAAGGCTTGTATCTGTGGGGTGATGTCGGTCGGGGTAAAACCTTT
CTGATGGATTTGTTTTTCGATTGTTTGCCAAGTGATGGCAAGTTAAGACTGCATTTCCACCGCTTTATGGCACGGATACA
CAATGCACTGCGTGAGCATTCGGGTAAACGCGATCCACTAACCCTGATTGCTAAAAATCTCGCGAAAGAGTGCAAGGTGC
TGTGTTTCGATGAGTTTTTTGTCTCAGACATTGGCGATGCCATGATACTCGCAGGGCTATTTGAGTGCCTATTCGAACAA
GGTGTGGTGCTGGTCGCGACCTCTAATATTCCTATTGAGCGCTTATATGAAAACGGCTTAGCCAGACACAGATTTTTACC
TTGTATCCAACTGCTGCAAGCGCACACGCAAATGCTGCATCTCGATGGCAACCAAGACCACAGGATGCACGCCATCAATG
CTGTATTAAACAACGAGATTGGCATTGATAGCGCTGAAGTTAACGCATCGATTTCCCGCAATATCGGCATTACCGGAACA
CTCGATTTTGAGCAGATTTTTGACAAGCTAGTGAATGGGTTAACGCCAAATGCGCTCAGTATGAGTGCTATTGGCATTAG
CGGTTCTCACATTAGTGATAGCAAAATGAGCAATGCTAGCCTCACCATCTGTAACCGTGAAATCCCAGTGATCCGCGCAG
CTTTAGAGCCCACAGACAACGCTGTTGCTTGGTTCGACTTTTATGCCCTGTGTGACGGCCCGAGATCCCAACTCGATTAC
ATCGAAATCGCCAGTCGATTTAAGATCTTAATGGTGAGCGGCGTTCCCAAATTAGGCGGCGAAGTGAAAGGCTGGATCCG
TGCCCGCGGCACGGAGGACGGCACAGGAGAAAACCAAGCCGAAACTACGGGCGAGCGCAAACTCTCCTACGCCGCCAACG
ATGACCCCGCGCGACGTTTTATCAGCTTAATTGATGAGTTGTACGATCAAAATGTCAGCCTTTATCTCAGCTGCGACGTG
CCACTGAGCGAACTCTACCAAGGTGGCGCACTTAGTTTTGAATTCCGCCGCACCTACAGCCGATTAATAGAAATGAGCCG
ACATGAATTAGCGTAA

Upstream 100 bases:

>100_bases
TGATGCCTCAAAAGGCGAGTACTGATATCGCACTTAATCAAAGCTAAAGCACACACTGACTGCAATAAACACCTAAAACA
ACCGCCAACGAGACCCCGAC

Downstream 100 bases:

>100_bases
AAAAATTGATTGTTTATCGCTTTGCAGAGACAAGAAATAAGTACCAAAATTTTGCTCAAACTATTATTGAACAATCATTA
GCAAAAAAATAAAAACGTCC

Product: AFG1 family ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 431; Mature: 430

Protein sequence:

>431_residues
MAHSNSASSQSITPMMTPLEVYRAKVSENLVDDPAQQQAVLALDMLFKQLMPQAYSARLSHSQSIKGLYLWGDVGRGKTF
LMDLFFDCLPSDGKLRLHFHRFMARIHNALREHSGKRDPLTLIAKNLAKECKVLCFDEFFVSDIGDAMILAGLFECLFEQ
GVVLVATSNIPIERLYENGLARHRFLPCIQLLQAHTQMLHLDGNQDHRMHAINAVLNNEIGIDSAEVNASISRNIGITGT
LDFEQIFDKLVNGLTPNALSMSAIGISGSHISDSKMSNASLTICNREIPVIRAALEPTDNAVAWFDFYALCDGPRSQLDY
IEIASRFKILMVSGVPKLGGEVKGWIRARGTEDGTGENQAETTGERKLSYAANDDPARRFISLIDELYDQNVSLYLSCDV
PLSELYQGGALSFEFRRTYSRLIEMSRHELA

Sequences:

>Translated_431_residues
MAHSNSASSQSITPMMTPLEVYRAKVSENLVDDPAQQQAVLALDMLFKQLMPQAYSARLSHSQSIKGLYLWGDVGRGKTF
LMDLFFDCLPSDGKLRLHFHRFMARIHNALREHSGKRDPLTLIAKNLAKECKVLCFDEFFVSDIGDAMILAGLFECLFEQ
GVVLVATSNIPIERLYENGLARHRFLPCIQLLQAHTQMLHLDGNQDHRMHAINAVLNNEIGIDSAEVNASISRNIGITGT
LDFEQIFDKLVNGLTPNALSMSAIGISGSHISDSKMSNASLTICNREIPVIRAALEPTDNAVAWFDFYALCDGPRSQLDY
IEIASRFKILMVSGVPKLGGEVKGWIRARGTEDGTGENQAETTGERKLSYAANDDPARRFISLIDELYDQNVSLYLSCDV
PLSELYQGGALSFEFRRTYSRLIEMSRHELA
>Mature_430_residues
AHSNSASSQSITPMMTPLEVYRAKVSENLVDDPAQQQAVLALDMLFKQLMPQAYSARLSHSQSIKGLYLWGDVGRGKTFL
MDLFFDCLPSDGKLRLHFHRFMARIHNALREHSGKRDPLTLIAKNLAKECKVLCFDEFFVSDIGDAMILAGLFECLFEQG
VVLVATSNIPIERLYENGLARHRFLPCIQLLQAHTQMLHLDGNQDHRMHAINAVLNNEIGIDSAEVNASISRNIGITGTL
DFEQIFDKLVNGLTPNALSMSAIGISGSHISDSKMSNASLTICNREIPVIRAALEPTDNAVAWFDFYALCDGPRSQLDYI
EIASRFKILMVSGVPKLGGEVKGWIRARGTEDGTGENQAETTGERKLSYAANDDPARRFISLIDELYDQNVSLYLSCDVP
LSELYQGGALSFEFRRTYSRLIEMSRHELA

Specific function: Unknown

COG id: COG1485

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AFG1 ATPase family [H]

Homologues:

Organism=Homo sapiens, GI21918872, Length=431, Percent_Identity=30.1624129930394, Blast_Score=173, Evalue=3e-43,
Organism=Escherichia coli, GI1789627, Length=437, Percent_Identity=34.324942791762, Blast_Score=230, Evalue=1e-61,
Organism=Caenorhabditis elegans, GI17505769, Length=351, Percent_Identity=32.1937321937322, Blast_Score=166, Evalue=3e-41,
Organism=Saccharomyces cerevisiae, GI6320783, Length=361, Percent_Identity=30.4709141274238, Blast_Score=147, Evalue=3e-36,
Organism=Drosophila melanogaster, GI20129913, Length=488, Percent_Identity=28.0737704918033, Blast_Score=156, Evalue=2e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005654 [H]

Pfam domain/function: PF03969 AFG1_ATPase [H]

EC number: NA

Molecular weight: Translated: 48011; Mature: 47880

Theoretical pI: Translated: 5.91; Mature: 5.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAHSNSASSQSITPMMTPLEVYRAKVSENLVDDPAQQQAVLALDMLFKQLMPQAYSARLS
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
HSQSIKGLYLWGDVGRGKTFLMDLFFDCLPSDGKLRLHFHRFMARIHNALREHSGKRDPL
CCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCHH
TLIAKNLAKECKVLCFDEFFVSDIGDAMILAGLFECLFEQGVVLVATSNIPIERLYENGL
HHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHCCH
ARHRFLPCIQLLQAHTQMLHLDGNQDHRMHAINAVLNNEIGIDSAEVNASISRNIGITGT
HHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHCCCCCCCCHHCCCHHHCCCCCEEE
LDFEQIFDKLVNGLTPNALSMSAIGISGSHISDSKMSNASLTICNREIPVIRAALEPTDN
CCHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCC
AVAWFDFYALCDGPRSQLDYIEIASRFKILMVSGVPKLGGEVKGWIRARGTEDGTGENQA
EEEHHHHHHHCCCCHHHHHHHHHHHHHEEEEEECCCCCCCCCEEHEEECCCCCCCCCCCH
ETTGERKLSYAANDDPARRFISLIDELYDQNVSLYLSCDVPLSELYQGGALSFEFRRTYS
HHCHHHEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHCCCCCCCHHHHHHHH
RLIEMSRHELA
HHHHHHHHHCC
>Mature Secondary Structure 
AHSNSASSQSITPMMTPLEVYRAKVSENLVDDPAQQQAVLALDMLFKQLMPQAYSARLS
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
HSQSIKGLYLWGDVGRGKTFLMDLFFDCLPSDGKLRLHFHRFMARIHNALREHSGKRDPL
CCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCHH
TLIAKNLAKECKVLCFDEFFVSDIGDAMILAGLFECLFEQGVVLVATSNIPIERLYENGL
HHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHCCH
ARHRFLPCIQLLQAHTQMLHLDGNQDHRMHAINAVLNNEIGIDSAEVNASISRNIGITGT
HHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHCCCCCCCCHHCCCHHHCCCCCEEE
LDFEQIFDKLVNGLTPNALSMSAIGISGSHISDSKMSNASLTICNREIPVIRAALEPTDN
CCHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCC
AVAWFDFYALCDGPRSQLDYIEIASRFKILMVSGVPKLGGEVKGWIRARGTEDGTGENQA
EEEHHHHHHHCCCCHHHHHHHHHHHHHEEEEEECCCCCCCCCEEHEEECCCCCCCCCCCH
ETTGERKLSYAANDDPARRFISLIDELYDQNVSLYLSCDVPLSELYQGGALSFEFRRTYS
HHCHHHEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHCCCCCCCHHHHHHHH
RLIEMSRHELA
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]