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The map label for this gene is ygiP [C]

Identifier: 126175576

GI number: 126175576

Start: 3954739

End: 3955686

Strand: Direct

Name: ygiP [C]

Synonym: Sbal_3379

Alternate gene names: 126175576

Gene position: 3954739-3955686 (Clockwise)

Preceding gene: 126175573

Following gene: 126175577

Centisome position: 77.13

GC content: 49.16

Gene sequence:

>948_bases
GTGATACAACATAGAGCTAGCCAGATGGTGATATTTCACACTCTGGTAACCAGTGGCAGTTTTACCCAAGCGGCAGCTAA
GTTAAAAACCTCGACCTCCTATGTCAGCAAGCAAATTGGCGCGTTGGAAGCTGAGCTGAACTTGCTGTTAGTGCAGCGCA
CCACGCGCACCTTAGTGTTAACTGACGCGGGCCAGCAATTTGCGCGTTATTGTGAGCAAGTGTTTGAAGCAACGCAAAAT
GCCGATGCCATGATGCTGGATGCCCGTGACGACATTAGCGGCACGATTCGCCTCGGTTCTTCCCAATCCTTTGGCACCTT
ACACATCATCCCCGCGCTGGAAGTGTTGCAGGAAAAATATCCCGAATTACGATTTGAGCTAAGCCTGTTCGACCATAAGG
CCGATATGCTAGAAGAAGGTCTCGATCTGTGGATCACTAACCATGAACAGCTGAACGAAGGCTATATCGCCCAGCATCTC
GCCGAGACTAACTTTGTGGTGGTCGCCTCCCCCGATTATTTGCTCAAGCACGGCGTGCCACACCATCCACGGGAGTTAGC
TCAGCACAATTGTGTTATCTATCAAAGTAAAAGCCGTAATTATGATCGCTGGAGTTTTGCTAAGGATGACCTTGAGCAAA
CCGTCAATGTCGCGGGGAATTACCGTGTCGACTTAGCCGAAGCTGTGCGTAATGCAGTGATTGCAGGAAGAGGCATAGGC
TATGTGGCCACGTATTTACTCAGTGATGAGTTTCAAAGCGGCAAGCTCATTCAACTCTTACCCGATTGGAAACCGCTGCA
ACAGATGCCCGTTTACGTGGTTTACCCAAGGCGGCGCCATTTACCGACTAAGTACAAAGTGATTATCGAATGTTTAAAGT
CCCATATCGGCCACCCGCCCTACTGGGATAAAAAGCTCAAACCTTGGTTAGGTAAGACAGTCACTTAA

Upstream 100 bases:

>100_bases
TTTGTAAGCTTGGTTTGAAATAACACACGATTGGCACAAACGGCTGTCGGTTAAGGCTAGGCTAGCTTAAAATAGCGATT
TAGATTCTAGAGGGCTTGGC

Downstream 100 bases:

>100_bases
GCTATAGTCATTTAAGCTACAGTCACTTAAGCTGCATTTCAAACCAGCACTGACTACTGCACCAGCCTAAAGTCGTCTGT
GGCGTGATTTCGATTATTGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MIQHRASQMVIFHTLVTSGSFTQAAAKLKTSTSYVSKQIGALEAELNLLLVQRTTRTLVLTDAGQQFARYCEQVFEATQN
ADAMMLDARDDISGTIRLGSSQSFGTLHIIPALEVLQEKYPELRFELSLFDHKADMLEEGLDLWITNHEQLNEGYIAQHL
AETNFVVVASPDYLLKHGVPHHPRELAQHNCVIYQSKSRNYDRWSFAKDDLEQTVNVAGNYRVDLAEAVRNAVIAGRGIG
YVATYLLSDEFQSGKLIQLLPDWKPLQQMPVYVVYPRRRHLPTKYKVIIECLKSHIGHPPYWDKKLKPWLGKTVT

Sequences:

>Translated_315_residues
MIQHRASQMVIFHTLVTSGSFTQAAAKLKTSTSYVSKQIGALEAELNLLLVQRTTRTLVLTDAGQQFARYCEQVFEATQN
ADAMMLDARDDISGTIRLGSSQSFGTLHIIPALEVLQEKYPELRFELSLFDHKADMLEEGLDLWITNHEQLNEGYIAQHL
AETNFVVVASPDYLLKHGVPHHPRELAQHNCVIYQSKSRNYDRWSFAKDDLEQTVNVAGNYRVDLAEAVRNAVIAGRGIG
YVATYLLSDEFQSGKLIQLLPDWKPLQQMPVYVVYPRRRHLPTKYKVIIECLKSHIGHPPYWDKKLKPWLGKTVT
>Mature_315_residues
MIQHRASQMVIFHTLVTSGSFTQAAAKLKTSTSYVSKQIGALEAELNLLLVQRTTRTLVLTDAGQQFARYCEQVFEATQN
ADAMMLDARDDISGTIRLGSSQSFGTLHIIPALEVLQEKYPELRFELSLFDHKADMLEEGLDLWITNHEQLNEGYIAQHL
AETNFVVVASPDYLLKHGVPHHPRELAQHNCVIYQSKSRNYDRWSFAKDDLEQTVNVAGNYRVDLAEAVRNAVIAGRGIG
YVATYLLSDEFQSGKLIQLLPDWKPLQQMPVYVVYPRRRHLPTKYKVIIECLKSHIGHPPYWDKKLKPWLGKTVT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789440, Length=298, Percent_Identity=28.8590604026846, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI1786401, Length=295, Percent_Identity=26.1016949152542, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI87081978, Length=287, Percent_Identity=27.1777003484321, Blast_Score=130, Evalue=8e-32,
Organism=Escherichia coli, GI1787128, Length=294, Percent_Identity=27.5510204081633, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI1789639, Length=292, Percent_Identity=27.0547945205479, Blast_Score=121, Evalue=5e-29,
Organism=Escherichia coli, GI1787589, Length=296, Percent_Identity=26.0135135135135, Blast_Score=118, Evalue=6e-28,
Organism=Escherichia coli, GI145693193, Length=285, Percent_Identity=28.0701754385965, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1787806, Length=252, Percent_Identity=26.5873015873016, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789173, Length=247, Percent_Identity=24.6963562753036, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1790011, Length=322, Percent_Identity=20.4968944099379, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1786448, Length=280, Percent_Identity=25.3571428571429, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1788481, Length=283, Percent_Identity=24.3816254416961, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35850; Mature: 35850

Theoretical pI: Translated: 7.44; Mature: 7.44

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQHRASQMVIFHTLVTSGSFTQAAAKLKTSTSYVSKQIGALEAELNLLLVQRTTRTLVL
CCCCHHHHEEEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCEEEEE
TDAGQQFARYCEQVFEATQNADAMMLDARDDISGTIRLGSSQSFGTLHIIPALEVLQEKY
ECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCEEEEHHHHHHHHHHC
PELRFELSLFDHKADMLEEGLDLWITNHEQLNEGYIAQHLAETNFVVVASPDYLLKHGVP
CCCEEEEEHHHHHHHHHHCCCEEEEECHHHHCCCHHHHHHCCCCEEEEECCCHHHHCCCC
HHPRELAQHNCVIYQSKSRNYDRWSFAKDDLEQTVNVAGNYRVDLAEAVRNAVIAGRGIG
CCHHHHHHCCEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCEEEHHHHHHHHHHCCCCHH
YVATYLLSDEFQSGKLIQLLPDWKPLQQMPVYVVYPRRRHLPTKYKVIIECLKSHIGHPP
HHHHHHHHCCCCCCCEEEECCCCCCHHHCCEEEECCCHHCCCHHHHHHHHHHHHHCCCCC
YWDKKLKPWLGKTVT
CCCCCCCCCCCCCCC
>Mature Secondary Structure
MIQHRASQMVIFHTLVTSGSFTQAAAKLKTSTSYVSKQIGALEAELNLLLVQRTTRTLVL
CCCCHHHHEEEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCEEEEE
TDAGQQFARYCEQVFEATQNADAMMLDARDDISGTIRLGSSQSFGTLHIIPALEVLQEKY
ECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCEEEEHHHHHHHHHHC
PELRFELSLFDHKADMLEEGLDLWITNHEQLNEGYIAQHLAETNFVVVASPDYLLKHGVP
CCCEEEEEHHHHHHHHHHCCCEEEEECHHHHCCCHHHHHHCCCCEEEEECCCHHHHCCCC
HHPRELAQHNCVIYQSKSRNYDRWSFAKDDLEQTVNVAGNYRVDLAEAVRNAVIAGRGIG
CCHHHHHHCCEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCEEEHHHHHHHHHHCCCCHH
YVATYLLSDEFQSGKLIQLLPDWKPLQQMPVYVVYPRRRHLPTKYKVIIECLKSHIGHPP
HHHHHHHHCCCCCCCEEEECCCCCCHHHCCEEEECCCHHCCCHHHHHHHHHHHHHCCCCC
YWDKKLKPWLGKTVT
CCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]