| Definition | Shewanella baltica OS155 chromosome, complete genome. |
|---|---|
| Accession | NC_009052 |
| Length | 5,127,376 |
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The map label for this gene is ykvO [H]
Identifier: 126175567
GI number: 126175567
Start: 3940230
End: 3940976
Strand: Direct
Name: ykvO [H]
Synonym: Sbal_3370
Alternate gene names: 126175567
Gene position: 3940230-3940976 (Clockwise)
Preceding gene: 126175565
Following gene: 126175568
Centisome position: 76.85
GC content: 49.13
Gene sequence:
>747_bases ATGCAAACCAGTCTTCACAATAAAACAATCTTAATCACAGGCGCCACTGCGGGTATTGGCTTGGCGACCGCGCACGCTTT GTTGCAACAAGGTGCGAAGTTAATCATCACAGGCCGCGACCAAAGCCGCTTATACCATGCCGTAAAGCAACTTGACGGCA ATGTTATCCCAGTGCTGTGTGACAGCGCCAATATCGCGCAAATCCAGCAAATGGCTGCGCAGTTAGCAAGGGATAAGATT ACACTCGATGGCCTAATTTTAAACGCTGGCGTGTTTTACCCAGCACCGTTTGAGCAGATGAGTGCCGATAACTTTCACAG CACAATGGCGATTAACTTTACTGGCCCAGTATTCACCCTACAGGCCTTATTACCCTGTTTAAACAACCCCAGTAGCGTGG TATTTATCTCTAGCGTTGCAGTACAAAAAGCGTTTTCTGAAGCGGGGGTTTACAGCGCCAGCAAAGCCGCATTTGAAGGT TTCGCAAGAGTGCTAAATCTTGAACTTGCAGCCCGAGGCATACGCATTAACTCAGTGCGTCCCGGGGTGACCGCAACCGA AATCCAAGCCAAAGCCGGCATGGATGACGCTACCATCAATGGCTTTTTTGAATCATTGAACACCACCCCTGTCGGCAGAG TATTAACGCCAGCAGATATTATCCCGGCGATTAACTATCTCATCTCCGATGCCAGTATTGGCCTACGCAATGCCTACATA GATATCGACGGTGGCTTTGGACTGTAG
Upstream 100 bases:
>100_bases TCTTATTACATACCTTATTGGAAACCATTCTCCGAGTTATGCTTTTCTGCGTCAAGCTTCATGACTCACCACGGACTCAT CACTCATCAGGAGCACACAG
Downstream 100 bases:
>100_bases CGAATTATCAAGTAGGAGGTTAAGGGAAACGCTGAAGATTTTTGAAGGAGTAATCTAAGCTCTGCTTATGGAAATCAAAC GTAGACCAAGGAGGATGTGC
Product: short-chain dehydrogenase/reductase SDR
Products: 2,3-Dihydroxybenzoate; H+; Nicotinamide adenine dinucleotide - reduced [C]
Alternate protein names: NA
Number of amino acids: Translated: 248; Mature: 248
Protein sequence:
>248_residues MQTSLHNKTILITGATAGIGLATAHALLQQGAKLIITGRDQSRLYHAVKQLDGNVIPVLCDSANIAQIQQMAAQLARDKI TLDGLILNAGVFYPAPFEQMSADNFHSTMAINFTGPVFTLQALLPCLNNPSSVVFISSVAVQKAFSEAGVYSASKAAFEG FARVLNLELAARGIRINSVRPGVTATEIQAKAGMDDATINGFFESLNTTPVGRVLTPADIIPAINYLISDASIGLRNAYI DIDGGFGL
Sequences:
>Translated_248_residues MQTSLHNKTILITGATAGIGLATAHALLQQGAKLIITGRDQSRLYHAVKQLDGNVIPVLCDSANIAQIQQMAAQLARDKI TLDGLILNAGVFYPAPFEQMSADNFHSTMAINFTGPVFTLQALLPCLNNPSSVVFISSVAVQKAFSEAGVYSASKAAFEG FARVLNLELAARGIRINSVRPGVTATEIQAKAGMDDATINGFFESLNTTPVGRVLTPADIIPAINYLISDASIGLRNAYI DIDGGFGL >Mature_248_residues MQTSLHNKTILITGATAGIGLATAHALLQQGAKLIITGRDQSRLYHAVKQLDGNVIPVLCDSANIAQIQQMAAQLARDKI TLDGLILNAGVFYPAPFEQMSADNFHSTMAINFTGPVFTLQALLPCLNNPSSVVFISSVAVQKAFSEAGVYSASKAAFEG FARVLNLELAARGIRINSVRPGVTATEIQAKAGMDDATINGFFESLNTTPVGRVLTPADIIPAINYLISDASIGLRNAYI DIDGGFGL
Specific function: Siderophore biosynthesis; enterobactin biosynthesis. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI19923817, Length=258, Percent_Identity=27.5193798449612, Blast_Score=97, Evalue=1e-20, Organism=Homo sapiens, GI5031737, Length=235, Percent_Identity=29.7872340425532, Blast_Score=94, Evalue=9e-20, Organism=Homo sapiens, GI33667109, Length=189, Percent_Identity=32.2751322751323, Blast_Score=93, Evalue=2e-19, Organism=Homo sapiens, GI7705925, Length=249, Percent_Identity=27.3092369477912, Blast_Score=93, Evalue=2e-19, Organism=Homo sapiens, GI32483357, Length=251, Percent_Identity=28.6852589641434, Blast_Score=92, Evalue=4e-19, Organism=Homo sapiens, GI126723750, Length=251, Percent_Identity=26.2948207171315, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI226371731, Length=195, Percent_Identity=28.7179487179487, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI4503817, Length=188, Percent_Identity=29.2553191489362, Blast_Score=76, Evalue=2e-14, Organism=Homo sapiens, GI20149619, Length=233, Percent_Identity=28.3261802575107, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI40254992, Length=244, Percent_Identity=25, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI10190746, Length=216, Percent_Identity=28.7037037037037, Blast_Score=75, Evalue=4e-14, Organism=Homo sapiens, GI59889578, Length=216, Percent_Identity=30.0925925925926, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI126723191, Length=185, Percent_Identity=30.8108108108108, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI225579078, Length=219, Percent_Identity=26.4840182648402, Blast_Score=71, Evalue=8e-13, Organism=Homo sapiens, GI66933014, Length=252, Percent_Identity=30.952380952381, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI7657478, Length=258, Percent_Identity=29.8449612403101, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI157739938, Length=213, Percent_Identity=25.8215962441315, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI223718074, Length=198, Percent_Identity=30.3030303030303, Blast_Score=64, Evalue=9e-11, Organism=Escherichia coli, GI1786812, Length=248, Percent_Identity=32.258064516129, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI1787820, Length=223, Percent_Identity=30.4932735426009, Blast_Score=94, Evalue=6e-21, Organism=Escherichia coli, GI1787526, Length=243, Percent_Identity=30.8641975308642, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1790717, Length=248, Percent_Identity=28.6290322580645, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI2367175, Length=249, Percent_Identity=29.718875502008, Blast_Score=81, Evalue=8e-17, Organism=Escherichia coli, GI1789378, Length=241, Percent_Identity=26.9709543568465, Blast_Score=74, Evalue=6e-15, Organism=Escherichia coli, GI1787545, Length=258, Percent_Identity=27.1317829457364, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1787335, Length=246, Percent_Identity=26.4227642276423, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1788459, Length=254, Percent_Identity=26.7716535433071, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI87082100, Length=254, Percent_Identity=28.3464566929134, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1789208, Length=261, Percent_Identity=25.6704980842912, Blast_Score=66, Evalue=2e-12, Organism=Caenorhabditis elegans, GI71994604, Length=250, Percent_Identity=29.2, Blast_Score=97, Evalue=6e-21, Organism=Caenorhabditis elegans, GI115534694, Length=247, Percent_Identity=29.5546558704453, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI71994600, Length=251, Percent_Identity=29.4820717131474, Blast_Score=95, Evalue=4e-20, Organism=Caenorhabditis elegans, GI17560332, Length=261, Percent_Identity=31.4176245210728, Blast_Score=88, Evalue=4e-18, Organism=Caenorhabditis elegans, GI17559104, Length=242, Percent_Identity=30.1652892561983, Blast_Score=87, Evalue=6e-18, Organism=Caenorhabditis elegans, GI17562904, Length=241, Percent_Identity=29.4605809128631, Blast_Score=84, Evalue=6e-17, Organism=Caenorhabditis elegans, GI17563726, Length=241, Percent_Identity=32.3651452282158, Blast_Score=84, Evalue=8e-17, Organism=Caenorhabditis elegans, GI72000259, Length=251, Percent_Identity=29.0836653386454, Blast_Score=84, Evalue=9e-17, Organism=Caenorhabditis elegans, GI17531453, Length=240, Percent_Identity=29.5833333333333, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17562910, Length=261, Percent_Identity=29.1187739463602, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17551412, Length=246, Percent_Identity=28.8617886178862, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17532805, Length=142, Percent_Identity=33.8028169014084, Blast_Score=77, Evalue=7e-15, Organism=Caenorhabditis elegans, GI17562990, Length=234, Percent_Identity=28.2051282051282, Blast_Score=77, Evalue=8e-15, Organism=Caenorhabditis elegans, GI17560676, Length=248, Percent_Identity=26.2096774193548, Blast_Score=77, Evalue=8e-15, Organism=Caenorhabditis elegans, GI17562908, Length=247, Percent_Identity=28.7449392712551, Blast_Score=76, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17562906, Length=244, Percent_Identity=29.0983606557377, Blast_Score=75, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17560220, Length=240, Percent_Identity=30, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17560150, Length=235, Percent_Identity=27.2340425531915, Blast_Score=74, Evalue=8e-14, Organism=Caenorhabditis elegans, GI17538486, Length=218, Percent_Identity=31.651376146789, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17544670, Length=265, Percent_Identity=26.7924528301887, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI193207620, Length=145, Percent_Identity=33.7931034482759, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI193204405, Length=237, Percent_Identity=30.8016877637131, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17538480, Length=271, Percent_Identity=28.7822878228782, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI25147288, Length=257, Percent_Identity=25.2918287937743, Blast_Score=71, Evalue=4e-13, Organism=Caenorhabditis elegans, GI71992402, Length=203, Percent_Identity=29.5566502463054, Blast_Score=70, Evalue=8e-13, Organism=Caenorhabditis elegans, GI17565030, Length=244, Percent_Identity=29.5081967213115, Blast_Score=70, Evalue=9e-13, Organism=Caenorhabditis elegans, GI32565532, Length=141, Percent_Identity=32.6241134751773, Blast_Score=67, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17532791, Length=138, Percent_Identity=31.1594202898551, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17555706, Length=255, Percent_Identity=24.7058823529412, Blast_Score=64, Evalue=8e-11, Organism=Saccharomyces cerevisiae, GI6324126, Length=250, Percent_Identity=26.8, Blast_Score=68, Evalue=1e-12, Organism=Saccharomyces cerevisiae, GI6323882, Length=194, Percent_Identity=30.4123711340206, Blast_Score=68, Evalue=1e-12, Organism=Saccharomyces cerevisiae, GI6322226, Length=186, Percent_Identity=28.494623655914, Blast_Score=67, Evalue=3e-12, Organism=Saccharomyces cerevisiae, GI6322227, Length=196, Percent_Identity=28.0612244897959, Blast_Score=66, Evalue=5e-12, Organism=Drosophila melanogaster, GI23397609, Length=248, Percent_Identity=33.4677419354839, Blast_Score=125, Evalue=2e-29, Organism=Drosophila melanogaster, GI24643142, Length=248, Percent_Identity=32.258064516129, Blast_Score=120, Evalue=7e-28, Organism=Drosophila melanogaster, GI28571526, Length=249, Percent_Identity=30.9236947791165, Blast_Score=111, Evalue=4e-25, Organism=Drosophila melanogaster, GI24644339, Length=244, Percent_Identity=32.3770491803279, Blast_Score=108, Evalue=4e-24, Organism=Drosophila melanogaster, GI21357041, Length=249, Percent_Identity=30.1204819277108, Blast_Score=102, Evalue=2e-22, Organism=Drosophila melanogaster, GI21355319, Length=233, Percent_Identity=29.1845493562232, Blast_Score=84, Evalue=9e-17, Organism=Drosophila melanogaster, GI21358495, Length=202, Percent_Identity=30.1980198019802, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI24644337, Length=244, Percent_Identity=31.1475409836066, Blast_Score=78, Evalue=5e-15, Organism=Drosophila melanogaster, GI161076371, Length=206, Percent_Identity=27.6699029126214, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI19921754, Length=206, Percent_Identity=28.6407766990291, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI22024069, Length=215, Percent_Identity=27.4418604651163, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI24639444, Length=249, Percent_Identity=28.1124497991968, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24647946, Length=201, Percent_Identity=31.3432835820896, Blast_Score=68, Evalue=4e-12, Organism=Drosophila melanogaster, GI28573296, Length=206, Percent_Identity=27.1844660194175, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI45553409, Length=198, Percent_Identity=31.3131313131313, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI24647948, Length=198, Percent_Identity=31.3131313131313, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI24586328, Length=229, Percent_Identity=27.5109170305677, Blast_Score=65, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.3.1.28 [C]
Molecular weight: Translated: 26191; Mature: 26191
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQTSLHNKTILITGATAGIGLATAHALLQQGAKLIITGRDQSRLYHAVKQLDGNVIPVLC CCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHCCCEEEEEE DSANIAQIQQMAAQLARDKITLDGLILNAGVFYPAPFEQMSADNFHSTMAINFTGPVFTL CCCCHHHHHHHHHHHHHCCEEECEEEEECCCCCCCCHHHHCCCCCCCEEEEEECCHHHHH QALLPCLNNPSSVVFISSVAVQKAFSEAGVYSASKAAFEGFARVLNLELAARGIRINSVR HHHHHHHCCCCCEEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCEEEECCC PGVTATEIQAKAGMDDATINGFFESLNTTPVGRVLTPADIIPAINYLISDASIGLRNAYI CCCCHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEE DIDGGFGL EECCCCCC >Mature Secondary Structure MQTSLHNKTILITGATAGIGLATAHALLQQGAKLIITGRDQSRLYHAVKQLDGNVIPVLC CCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHCCCEEEEEE DSANIAQIQQMAAQLARDKITLDGLILNAGVFYPAPFEQMSADNFHSTMAINFTGPVFTL CCCCHHHHHHHHHHHHHCCEEECEEEEECCCCCCCCHHHHCCCCCCCEEEEEECCHHHHH QALLPCLNNPSSVVFISSVAVQKAFSEAGVYSASKAAFEGFARVLNLELAARGIRINSVR HHHHHHHCCCCCEEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCEEEECCC PGVTATEIQAKAGMDDATINGFFESLNTTPVGRVLTPADIIPAINYLISDASIGLRNAYI CCCCHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEE DIDGGFGL EECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NAD+ [C]
Metal ions: NA
Kcat value (1/min): 5550 [C]
Specific activity: 66
Km value (mM): 0.26 {methyl-2,3-dehydro-3-hydroxybenzoate}} 0.2 {3-oxocyclohexane-1-carboxylic} 0.3 {2,3-dihydro-2,3-dihydroxybenzoate}} [C]
Substrates: 2,3-Dihydro-2,3-dihydroxybenzoate; Nicotinamide adenine dinucleotide [C]
Specific reaction: 2,3-Dihydro-2,3-dihydroxybenzoate + Nicotinamide adenine dinucleotide <==> 2,3-Dihydroxybenzoate + H+ + Nicotinamide adenine dinucleotide - reduced [C]
General reaction: Redox reaction [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]