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The map label for this gene is lppB [H]

Identifier: 126175321

GI number: 126175321

Start: 3656043

End: 3656939

Strand: Reverse

Name: lppB [H]

Synonym: Sbal_3120

Alternate gene names: 126175321

Gene position: 3656939-3656043 (Counterclockwise)

Preceding gene: 126175322

Following gene: 126175320

Centisome position: 71.32

GC content: 41.25

Gene sequence:

>897_bases
TTGTTGAATGCGGGTTTAGTCTTAAACCTCTGCTTTATATTTCTGCTTGCAGGCTGTAGCTTTCAGGCCAGCCGACCCGC
GCCCGTCGAAAATATTTCCCATAGCTACTCTAAAAACAACAAAGGCCACATTAAATCGAATTCATATAAAGTTAAGAAAG
GCGACACGCTTTACTCTATTTCTTGGGGAGCAGGAAAGGATTTTTCTGAAATAGCTAAACTTAATCAGTTAGATAACCCT
TATACAATTTACCCGGGACAGATTTTATATTTAACGAATGCTAAGTCGAGTAGTCAGTCCAAATCTACAACTTTAGATGG
ATGGAAAACGAGCTCCTCGGGTAATAATTCTAGTAAAAATGATAAAAAACAAACAGATAATCAAGTTTCTCAAACCGACG
CTAAGTCAAGTAATGATCTGAAAAAAACACTTGATCAGAAAGCTAAGCCCGCGTACCTTGTAACAAGTTCCCAACAAAAT
GTTAACTCGATCATGGTTCCACCGACTTCGACACTACCAACCAGTGTGAGTCAGTGGGAGTGGCCAGTAAGAGGGAAGTT
AATCGGGACTTACTCTGCCAATGAGCAGGGAAATAAAGGCATTAAGATCGCGGGGAATCGGGGAGATATCATCAAAGCTG
CTGCAGATGGGCGGGTGGTATACGCAGGAAGTGCTCTTAGGGGTTACGGTAATTTAGTGATTATTAAACATAGTGACGAT
TACCTTAGTGCTTATGCTCATACGGACAAGATCTTAGTCAAAGAAAAGCAACATGTCCTCGCAGGGCAGACAGTTGCAAA
AATGGGCAGTACAGGTGCCAATCGGGTAATGTTACATTTTGAAATTCGTTACCATGGACAGTCTGTAAACCCACTTACTT
ATTTACCCAAACAATGA

Upstream 100 bases:

>100_bases
CCTTGTGTTGTGCTACTGTCTCCACTGAACAACTTGTCTTGCAACGAGGGCATTGTTTTCTCATCATAAACAGTAATACA
GCCTCACCAAGGAGTTTTTA

Downstream 100 bases:

>100_bases
TTGCTTGGGGCCTTGTTGGCAAATGGAGGATAGGAAATTGCACTAATTCAGCAGTTTAATCAGGTTTGGGAGATTTAATC
ATGAGCCGCATAAAAAGCAC

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MLNAGLVLNLCFIFLLAGCSFQASRPAPVENISHSYSKNNKGHIKSNSYKVKKGDTLYSISWGAGKDFSEIAKLNQLDNP
YTIYPGQILYLTNAKSSSQSKSTTLDGWKTSSSGNNSSKNDKKQTDNQVSQTDAKSSNDLKKTLDQKAKPAYLVTSSQQN
VNSIMVPPTSTLPTSVSQWEWPVRGKLIGTYSANEQGNKGIKIAGNRGDIIKAAADGRVVYAGSALRGYGNLVIIKHSDD
YLSAYAHTDKILVKEKQHVLAGQTVAKMGSTGANRVMLHFEIRYHGQSVNPLTYLPKQ

Sequences:

>Translated_298_residues
MLNAGLVLNLCFIFLLAGCSFQASRPAPVENISHSYSKNNKGHIKSNSYKVKKGDTLYSISWGAGKDFSEIAKLNQLDNP
YTIYPGQILYLTNAKSSSQSKSTTLDGWKTSSSGNNSSKNDKKQTDNQVSQTDAKSSNDLKKTLDQKAKPAYLVTSSQQN
VNSIMVPPTSTLPTSVSQWEWPVRGKLIGTYSANEQGNKGIKIAGNRGDIIKAAADGRVVYAGSALRGYGNLVIIKHSDD
YLSAYAHTDKILVKEKQHVLAGQTVAKMGSTGANRVMLHFEIRYHGQSVNPLTYLPKQ
>Mature_298_residues
MLNAGLVLNLCFIFLLAGCSFQASRPAPVENISHSYSKNNKGHIKSNSYKVKKGDTLYSISWGAGKDFSEIAKLNQLDNP
YTIYPGQILYLTNAKSSSQSKSTTLDGWKTSSSGNNSSKNDKKQTDNQVSQTDAKSSNDLKKTLDQKAKPAYLVTSSQQN
VNSIMVPPTSTLPTSVSQWEWPVRGKLIGTYSANEQGNKGIKIAGNRGDIIKAAADGRVVYAGSALRGYGNLVIIKHSDD
YLSAYAHTDKILVKEKQHVLAGQTVAKMGSTGANRVMLHFEIRYHGQSVNPLTYLPKQ

Specific function: May be a virulence determinant [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789099, Length=287, Percent_Identity=41.1149825783972, Blast_Score=207, Evalue=9e-55,
Organism=Escherichia coli, GI87082174, Length=294, Percent_Identity=39.4557823129252, Blast_Score=187, Evalue=7e-49,
Organism=Escherichia coli, GI87082297, Length=121, Percent_Identity=41.3223140495868, Blast_Score=87, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 32481; Mature: 32481

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNAGLVLNLCFIFLLAGCSFQASRPAPVENISHSYSKNNKGHIKSNSYKVKKGDTLYSI
CCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCEECCCEEEECCCEEEEE
SWGAGKDFSEIAKLNQLDNPYTIYPGQILYLTNAKSSSQSKSTTLDGWKTSSSGNNSSKN
ECCCCCCHHHHHHHHHCCCCEEECCCEEEEEECCCCCCCCCCCCCCCEECCCCCCCCCCC
DKKQTDNQVSQTDAKSSNDLKKTLDQKAKPAYLVTSSQQNVNSIMVPPTSTLPTSVSQWE
CHHHHCCHHHHHCCCCCHHHHHHHHHCCCCEEEEECCCCCCCEEEECCCCCCCCCHHHCC
WPVRGKLIGTYSANEQGNKGIKIAGNRGDIIKAAADGRVVYAGSALRGYGNLVIIKHSDD
CCCCCEEEEEECCCCCCCCCEEEECCCCCEEEEECCCEEEEECCEECCCCCEEEEEECCC
YLSAYAHTDKILVKEKQHVLAGQTVAKMGSTGANRVMLHFEIRYHGQSVNPLTYLPKQ
HHHHHHCCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure
MLNAGLVLNLCFIFLLAGCSFQASRPAPVENISHSYSKNNKGHIKSNSYKVKKGDTLYSI
CCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCEECCCEEEECCCEEEEE
SWGAGKDFSEIAKLNQLDNPYTIYPGQILYLTNAKSSSQSKSTTLDGWKTSSSGNNSSKN
ECCCCCCHHHHHHHHHCCCCEEECCCEEEEEECCCCCCCCCCCCCCCEECCCCCCCCCCC
DKKQTDNQVSQTDAKSSNDLKKTLDQKAKPAYLVTSSQQNVNSIMVPPTSTLPTSVSQWE
CHHHHCCHHHHHCCCCCHHHHHHHHHCCCCEEEEECCCCCCCEEEECCCCCCCCCHHHCC
WPVRGKLIGTYSANEQGNKGIKIAGNRGDIIKAAADGRVVYAGSALRGYGNLVIIKHSDD
CCCCCEEEEEECCCCCCCCCEEEECCCCCEEEEECCCEEEEECCEECCCCCEEEEEECCC
YLSAYAHTDKILVKEKQHVLAGQTVAKMGSTGANRVMLHFEIRYHGQSVNPLTYLPKQ
HHHHHHCCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]