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The map label for this gene is rarA [H]

Identifier: 126174375

GI number: 126174375

Start: 2503901

End: 2505232

Strand: Direct

Name: rarA [H]

Synonym: Sbal_2158

Alternate gene names: 126174375

Gene position: 2503901-2505232 (Clockwise)

Preceding gene: 126174374

Following gene: 126174376

Centisome position: 48.83

GC content: 51.65

Gene sequence:

>1332_bases
GTGAGCAGTTTATCCTTTAATTTCGCCCCAGACTTTCGTCCCTTGGCCGCACGCATGCGGCCAAGAACGATCGCCGAGTA
CATAGGCCAAGCCCATTTACTGGGTGAAGGCCAGCCGCTACGCAAAGCATTGGAAGCGGGACGCGCCCATTCCATGATGT
TGTGGGGGCCGCCGGGCACAGGTAAAACGACCTTAGCCGAATTAATCGCACATTATTCAAATGCGCACGTTGAACGCATC
TCTGCGGTCACCTCTGGCGTCAAAGACATTCGCGCGGCGATTGAGCAAGCGAAAGCCGTGGCTGAATCCCGTGGTCAACG
CACGTTATTGTTTGTCGATGAAGTCCACCGATTCAATAAAAGCCAGCAGGATGCCTTTCTGCCATTTATTGAAGATGGCA
CTGTGATTTTTATCGGTGCGACCACTGAAAACCCGTCGTTTGAAATCAACAATGCGCTGCTCTCGCGGGCACGTGTCTAT
CTTATCAAGCGCTTAAGCCATGATGAGATAGCCCACATAGTAACTCAAGCCTTAAGCGATACCGAGCGCGGCTTAGGCCA
ACGCCAATTTGTGATGCCAACCGATGTGCTCACCACACTGGCGCAACTTTGTGATGGTGATGCCCGTAAAGCTTTAAATC
TTATTGAGTTGATGGGCGATATGCTCGCCGATGGTGGCACCTTTACCACTGAGATGTTGATCCAAGTGGCGGGGCACCAA
GTTGCCGGATTCGATAAGAACGGCGATCAGTTTTACGATTTAATCTCAGCCGTCCATAAATCAATCCGTGGCTCAGCACC
CGATGCGGCGCTGTACTGGTTTTGTCGAATATTAGAAGGCGGCGGCGATCCGCTGTATGTCGCAAGGCGCTTACTGGCGA
TTGCCTCTGAAGATGTGGGCAATGCCGATCCTGCGGCGATGACCATCGCGCTTAATGCCTGGGATTGTTTTCACCGTGTT
GGCCCAGCCGAAGGTGAGCGAGCAATAGCACAAGCCATTGTTTATCTTGCCAGCGCGCCTAAGAGCAACGCTGTCTATAC
CGCATTTAAGGCCGCGCGTGAGTTAGCTCGCGATACTGGGCAAGTCGAAGTGCCGCACCATTTACGCAATGCACCGACTC
AGTTAATGAAAGACATTGGCATGGGAGCAGGGTATCGATATGCCCACGATGAAGCCAATGCCTATGCCAGTGGTGAAAAT
TATTTCCCCGAATCCCTGCAAACAGCGCAGTTTTATTTTCCGACTGAGCGAGGGTTCGAGAAGCGAATCAAAGATAAGTT
GGCGCAATTAGCCCTGTTAGATCAAGCCAGCGAGCACAAAAGATATGAATAA

Upstream 100 bases:

>100_bases
AAGCGATTACTGATAAAGACAAAGCGCTGTTCAGCTTTGTGCTGCCTGACAATGTCGATGTTGATGATCAACGTCGTAAA
ACAGCGCACTAGGCGATAGC

Downstream 100 bases:

>100_bases
TCTCTTACTTGTGGCGCTAGGTGGTTCAATTGGGGCTGTTTTTCGCTATCTTATTTCAATATTCATGATCCAGGTATTTG
GCAGCAGTTTTCCTTTTGGT

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 443; Mature: 442

Protein sequence:

>443_residues
MSSLSFNFAPDFRPLAARMRPRTIAEYIGQAHLLGEGQPLRKALEAGRAHSMMLWGPPGTGKTTLAELIAHYSNAHVERI
SAVTSGVKDIRAAIEQAKAVAESRGQRTLLFVDEVHRFNKSQQDAFLPFIEDGTVIFIGATTENPSFEINNALLSRARVY
LIKRLSHDEIAHIVTQALSDTERGLGQRQFVMPTDVLTTLAQLCDGDARKALNLIELMGDMLADGGTFTTEMLIQVAGHQ
VAGFDKNGDQFYDLISAVHKSIRGSAPDAALYWFCRILEGGGDPLYVARRLLAIASEDVGNADPAAMTIALNAWDCFHRV
GPAEGERAIAQAIVYLASAPKSNAVYTAFKAARELARDTGQVEVPHHLRNAPTQLMKDIGMGAGYRYAHDEANAYASGEN
YFPESLQTAQFYFPTERGFEKRIKDKLAQLALLDQASEHKRYE

Sequences:

>Translated_443_residues
MSSLSFNFAPDFRPLAARMRPRTIAEYIGQAHLLGEGQPLRKALEAGRAHSMMLWGPPGTGKTTLAELIAHYSNAHVERI
SAVTSGVKDIRAAIEQAKAVAESRGQRTLLFVDEVHRFNKSQQDAFLPFIEDGTVIFIGATTENPSFEINNALLSRARVY
LIKRLSHDEIAHIVTQALSDTERGLGQRQFVMPTDVLTTLAQLCDGDARKALNLIELMGDMLADGGTFTTEMLIQVAGHQ
VAGFDKNGDQFYDLISAVHKSIRGSAPDAALYWFCRILEGGGDPLYVARRLLAIASEDVGNADPAAMTIALNAWDCFHRV
GPAEGERAIAQAIVYLASAPKSNAVYTAFKAARELARDTGQVEVPHHLRNAPTQLMKDIGMGAGYRYAHDEANAYASGEN
YFPESLQTAQFYFPTERGFEKRIKDKLAQLALLDQASEHKRYE
>Mature_442_residues
SSLSFNFAPDFRPLAARMRPRTIAEYIGQAHLLGEGQPLRKALEAGRAHSMMLWGPPGTGKTTLAELIAHYSNAHVERIS
AVTSGVKDIRAAIEQAKAVAESRGQRTLLFVDEVHRFNKSQQDAFLPFIEDGTVIFIGATTENPSFEINNALLSRARVYL
IKRLSHDEIAHIVTQALSDTERGLGQRQFVMPTDVLTTLAQLCDGDARKALNLIELMGDMLADGGTFTTEMLIQVAGHQV
AGFDKNGDQFYDLISAVHKSIRGSAPDAALYWFCRILEGGGDPLYVARRLLAIASEDVGNADPAAMTIALNAWDCFHRVG
PAEGERAIAQAIVYLASAPKSNAVYTAFKAARELARDTGQVEVPHHLRNAPTQLMKDIGMGAGYRYAHDEANAYASGENY
FPESLQTAQFYFPTERGFEKRIKDKLAQLALLDQASEHKRYE

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=442, Percent_Identity=41.8552036199095, Blast_Score=322, Evalue=5e-88,
Organism=Homo sapiens, GI18426904, Length=442, Percent_Identity=38.0090497737557, Blast_Score=269, Evalue=3e-72,
Organism=Escherichia coli, GI1787119, Length=447, Percent_Identity=65.9955257270693, Blast_Score=600, Evalue=1e-173,
Organism=Escherichia coli, GI1786676, Length=233, Percent_Identity=28.3261802575107, Blast_Score=65, Evalue=7e-12,
Organism=Saccharomyces cerevisiae, GI6324111, Length=426, Percent_Identity=37.0892018779343, Blast_Score=295, Evalue=8e-81,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 48696; Mature: 48565

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSLSFNFAPDFRPLAARMRPRTIAEYIGQAHLLGEGQPLRKALEAGRAHSMMLWGPPGT
CCCCCCCCCCCCHHHHHHCCHHHHHHHCCCHHCCCCCHHHHHHHHCCCCCEEEEECCCCC
GKTTLAELIAHYSNAHVERISAVTSGVKDIRAAIEQAKAVAESRGQRTLLFVDEVHRFNK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHCCC
SQQDAFLPFIEDGTVIFIGATTENPSFEINNALLSRARVYLIKRLSHDEIAHIVTQALSD
CCCCCCCCEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
TERGLGQRQFVMPTDVLTTLAQLCDGDARKALNLIELMGDMLADGGTFTTEMLIQVAGHQ
HHHCCCCCEEECCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
VAGFDKNGDQFYDLISAVHKSIRGSAPDAALYWFCRILEGGGDPLYVARRLLAIASEDVG
EECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC
NADPAAMTIALNAWDCFHRVGPAEGERAIAQAIVYLASAPKSNAVYTAFKAARELARDTG
CCCCCEEEEEEEHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC
QVEVPHHLRNAPTQLMKDIGMGAGYRYAHDEANAYASGENYFPESLQTAQFYFPTERGFE
CEECCHHHHCCHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCHHHCCCEEECCCCCCHH
KRIKDKLAQLALLDQASEHKRYE
HHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SSLSFNFAPDFRPLAARMRPRTIAEYIGQAHLLGEGQPLRKALEAGRAHSMMLWGPPGT
CCCCCCCCCCCHHHHHHCCHHHHHHHCCCHHCCCCCHHHHHHHHCCCCCEEEEECCCCC
GKTTLAELIAHYSNAHVERISAVTSGVKDIRAAIEQAKAVAESRGQRTLLFVDEVHRFNK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHCCC
SQQDAFLPFIEDGTVIFIGATTENPSFEINNALLSRARVYLIKRLSHDEIAHIVTQALSD
CCCCCCCCEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
TERGLGQRQFVMPTDVLTTLAQLCDGDARKALNLIELMGDMLADGGTFTTEMLIQVAGHQ
HHHCCCCCEEECCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
VAGFDKNGDQFYDLISAVHKSIRGSAPDAALYWFCRILEGGGDPLYVARRLLAIASEDVG
EECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC
NADPAAMTIALNAWDCFHRVGPAEGERAIAQAIVYLASAPKSNAVYTAFKAARELARDTG
CCCCCEEEEEEEHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC
QVEVPHHLRNAPTQLMKDIGMGAGYRYAHDEANAYASGENYFPESLQTAQFYFPTERGFE
CEECCHHHHCCHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCHHHCCCEEECCCCCCHH
KRIKDKLAQLALLDQASEHKRYE
HHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]