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The map label for this gene is lytR [H]

Identifier: 125624403

GI number: 125624403

Start: 1574963

End: 1575793

Strand: Reverse

Name: lytR [H]

Synonym: llmg_1602

Alternate gene names: 125624403

Gene position: 1575793-1574963 (Counterclockwise)

Preceding gene: 125624404

Following gene: 125624402

Centisome position: 62.3

GC content: 37.55

Gene sequence:

>831_bases
GTGCTTTTGTTTTTGGTCCTTCTTATAGGCGCTGTTGGTGGAAAAGTTTATTTTGATGTGAAAACAGCTGTAACGAAGGC
TTATGTGAATCCGCCAACGCAAATGACTTCTGTTTCCTTAAAAAAGAAGGAGGCGTTTACGACGGCCATTCTTGGAATAA
GTAAAATTGATGGGAAAGACGTCTTAGTTTCGGCAGATATGGCAGCGATGAATCCTCGTTTGCAGCAAACGACGGTTATC
AATCTTTCGACAAGTGCTCTGCTGCCAGACAATCAAAGTTTACTGACTCTCTATAATTCTGGGGGAGAAGCAGCGGTTAT
TAAAGAGATGGAGAATCTTCTTCAGGTTAAGACCAATAAATTTATAAGAATTGATTTAGACCAAATGGGAGAATTAGTTC
AGGCCATTGGTGGTGTATCTATTCAGAATGCTAATGAATTTACTGCCCAAGGTTTCAAGTTTCCTCAAGGAACTGTTGCC
TTAAACAACACCAAGGAAGTGGCAGCTTATTTCACTCGTTTAAATACCGGAGATACAAAAAAAGCTTTTGCACGTCAGCA
AGAAGTTGTAATGGCAGTTATCGGCAAACTCAAAAGTCCGCTGCTTTTAATTAGACATTATGGTCAAATTTTGACAGTCT
TTCCTAAGGTTTTTAAAACTACTTTTAATTTTGGAAATGTTAAGGCTTTAGCCTTAAATTACCATGGAGCAATAAGTATT
AAAAAAATTAATATCCACAGTAGCAAAGTAGCAGGTCAGTCAGAAGTCACTGCGATTTCACAAGCAAATCTCGATTTGGC
TAAAGAACAATTTCAAGAAAGTTTAAAATAA

Upstream 100 bases:

>100_bases
AGGAGAATAAAATGAGTAAATCCAGAATTGCAGAAAATGACAGTCACTTAAAACGTGGAGCTAAAAAAAGAAAAGACCTA
CTTTAAAAATAATTTTGGCT

Downstream 100 bases:

>100_bases
AAAGATAAAAATCATTGGTCAAGCATCCAATGATTTTTTTATGACATCTATTTATTAAAAAAAGCAATTTTTGGCAAAAA
GAATGTCTTTTTCTTAACAG

Product: putative transcriptional regulator

Products: NA

Alternate protein names: Membrane-bound protein lytR [H]

Number of amino acids: Translated: 276; Mature: 276

Protein sequence:

>276_residues
MLLFLVLLIGAVGGKVYFDVKTAVTKAYVNPPTQMTSVSLKKKEAFTTAILGISKIDGKDVLVSADMAAMNPRLQQTTVI
NLSTSALLPDNQSLLTLYNSGGEAAVIKEMENLLQVKTNKFIRIDLDQMGELVQAIGGVSIQNANEFTAQGFKFPQGTVA
LNNTKEVAAYFTRLNTGDTKKAFARQQEVVMAVIGKLKSPLLLIRHYGQILTVFPKVFKTTFNFGNVKALALNYHGAISI
KKINIHSSKVAGQSEVTAISQANLDLAKEQFQESLK

Sequences:

>Translated_276_residues
MLLFLVLLIGAVGGKVYFDVKTAVTKAYVNPPTQMTSVSLKKKEAFTTAILGISKIDGKDVLVSADMAAMNPRLQQTTVI
NLSTSALLPDNQSLLTLYNSGGEAAVIKEMENLLQVKTNKFIRIDLDQMGELVQAIGGVSIQNANEFTAQGFKFPQGTVA
LNNTKEVAAYFTRLNTGDTKKAFARQQEVVMAVIGKLKSPLLLIRHYGQILTVFPKVFKTTFNFGNVKALALNYHGAISI
KKINIHSSKVAGQSEVTAISQANLDLAKEQFQESLK
>Mature_276_residues
MLLFLVLLIGAVGGKVYFDVKTAVTKAYVNPPTQMTSVSLKKKEAFTTAILGISKIDGKDVLVSADMAAMNPRLQQTTVI
NLSTSALLPDNQSLLTLYNSGGEAAVIKEMENLLQVKTNKFIRIDLDQMGELVQAIGGVSIQNANEFTAQGFKFPQGTVA
LNNTKEVAAYFTRLNTGDTKKAFARQQEVVMAVIGKLKSPLLLIRHYGQILTVFPKVFKTTFNFGNVKALALNYHGAISI
KKINIHSSKVAGQSEVTAISQANLDLAKEQFQESLK

Specific function: Attenuator role for operon expression [H]

COG id: COG1316

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LytR/CpsA/Psr regulatory protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004474 [H]

Pfam domain/function: PF03816 LytR_cpsA_psr [H]

EC number: NA

Molecular weight: Translated: 30013; Mature: 30013

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLFLVLLIGAVGGKVYFDVKTAVTKAYVNPPTQMTSVSLKKKEAFTTAILGISKIDGKD
CHHHHHHHHHHCCCEEEEEEHHHHHHHHCCCCCHHHEEHHHHHHHHHHHHHHHEECCCCE
VLVSADMAAMNPRLQQTTVINLSTSALLPDNQSLLTLYNSGGEAAVIKEMENLLQVKTNK
EEEECCHHHCCCCCCEEEEEEEECCEECCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC
FIRIDLDQMGELVQAIGGVSIQNANEFTAQGFKFPQGTVALNNTKEVAAYFTRLNTGDTK
EEEEEHHHHHHHHHHHCCCEECCCCHHHHCCCCCCCCCEEECCHHHHHHHHHHCCCCCHH
KAFARQQEVVMAVIGKLKSPLLLIRHYGQILTVFPKVFKTTFNFGNVKALALNYHGAISI
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEE
KKINIHSSKVAGQSEVTAISQANLDLAKEQFQESLK
EEEEECCCCCCCCHHHHHHHHCCHHHHHHHHHHHCC
>Mature Secondary Structure
MLLFLVLLIGAVGGKVYFDVKTAVTKAYVNPPTQMTSVSLKKKEAFTTAILGISKIDGKD
CHHHHHHHHHHCCCEEEEEEHHHHHHHHCCCCCHHHEEHHHHHHHHHHHHHHHEECCCCE
VLVSADMAAMNPRLQQTTVINLSTSALLPDNQSLLTLYNSGGEAAVIKEMENLLQVKTNK
EEEECCHHHCCCCCCEEEEEEEECCEECCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC
FIRIDLDQMGELVQAIGGVSIQNANEFTAQGFKFPQGTVALNNTKEVAAYFTRLNTGDTK
EEEEEHHHHHHHHHHHCCCEECCCCHHHHCCCCCCCCCEEECCHHHHHHHHHHCCCCCHH
KAFARQQEVVMAVIGKLKSPLLLIRHYGQILTVFPKVFKTTFNFGNVKALALNYHGAISI
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEE
KKINIHSSKVAGQSEVTAISQANLDLAKEQFQESLK
EEEEECCCCCCCCHHHHHHHHCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12663927 [H]