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The map label for this gene is deoB [H]

Identifier: 125624402

GI number: 125624402

Start: 1573541

End: 1574776

Strand: Reverse

Name: deoB [H]

Synonym: llmg_1601

Alternate gene names: 125624402

Gene position: 1574776-1573541 (Counterclockwise)

Preceding gene: 125624403

Following gene: 125624401

Centisome position: 62.26

GC content: 38.19

Gene sequence:

>1236_bases
ATGCCTAAAAAATTTGGTCGTATTCATCTTGTTGTAATGGACTCTGTCGGAATTGGTGCTGCACCAGATGCTGACAAATT
CTTTAATCATGACGTTGAAACGCATGAAGCAATTAATGATGTGAAATCAGACACGATTGGTCATATTTCAGAAATTCGTG
GACTTGATGTGCCTAACCTTCAAAAATTAGGTTGGGGAAATATCCCGCGTGAAAGTCCACTAAAAACGATTCCTGCTGCA
CAAAAACCAGCAGCTTATGTCACAAAACTTGAAGAAATTTCAAAAGGTAAAGATACAATGACTGGGCACTGGGAAATTAT
GGGCTTGAATATTCAAACGCCATTCCCAACTTATCCAGAAGGATATCCAGAAGATTTACTTGAAAAAATTGAGGAATTTT
CTGGTCGTAAAATCATTCGTGAAGCGAATAAACCTTATTCTGGGACAGCGGTCATTGAAGATTTCGGCCCTCGTCAATTG
GAAACTGGAGAGTTGATTATTTATACTTCAGCTGACCCTGTTTTACAAATTGCTGCACATGAAGATGTTATTTCTCGTGA
AGAACTTTATAAAATTTGTGAATATGTTCGTTCAATTACCCTAGAAGGTTCTGGTATCATGATTGGCCGAATCATCGCTC
GCCCTTATGTTGGAGAAGCCGGAAACTTTGAACGGACTGATGGACGTCGTGACTATGCGCTCTCACCATTTGCTGAAACT
GTATTAGAAAAACTTTACAAGGCAGGGATTGATACTTACTCAGTCGGAAAAATTTCAGATATTTTCAACACAGTAGGTGT
TAAATATGATATGGGTCATAACCATAATGACATGGATGGGGTTGATCGTCTACTTAAAGCAATGACGAAAACTGAATTTA
CTGAAGGATTTTCTTTTACAAACTTAGTTGATTTCGATGCGAAATATGGACATCGTCGCGATGTTGAAGGTTACGGAAAA
GCAATTGAAGACTTTGACGGTCGCTTGCCAGAAATCATTGATGCAATGAAAGAAGATGATTTGTTGATGATTACTGCTGA
CCACGGGAATGACCCTTCATACGTAGGAACTGACCATACTCGTGAATATATTCCACTCGTAATTTTCTCTAAATCATTTA
AAGAACCTAAAGTTTTACCTGTGGGACATTTTGCTGACATTTCAGCAACTATTGCTGAAAACTTCTCTGTTAAAAAAGCT
CAAACGGGTGAATCATTCTTGGATGCATTAGTTTAA

Upstream 100 bases:

>100_bases
CTTTTTCTTAACAGCTTTGACTGCCCTTTTTTGGATAGTTTATGTATAATAGAATTAGTTAGTTTTGCTATTGATATAGC
ATCAGAAATGGAGAGATATA

Downstream 100 bases:

>100_bases
AATAAAGTGCTTCTGTCAGTCAATTTTACTGACAGAATTAGAAAGAAAAATCTATTTATGGCTAAAAAAGCATTTTGCCA
ATCTTGCGGAATACCAATTG

Product: phosphopentomutase

Products: NA

Alternate protein names: Phosphodeoxyribomutase [H]

Number of amino acids: Translated: 411; Mature: 410

Protein sequence:

>411_residues
MPKKFGRIHLVVMDSVGIGAAPDADKFFNHDVETHEAINDVKSDTIGHISEIRGLDVPNLQKLGWGNIPRESPLKTIPAA
QKPAAYVTKLEEISKGKDTMTGHWEIMGLNIQTPFPTYPEGYPEDLLEKIEEFSGRKIIREANKPYSGTAVIEDFGPRQL
ETGELIIYTSADPVLQIAAHEDVISREELYKICEYVRSITLEGSGIMIGRIIARPYVGEAGNFERTDGRRDYALSPFAET
VLEKLYKAGIDTYSVGKISDIFNTVGVKYDMGHNHNDMDGVDRLLKAMTKTEFTEGFSFTNLVDFDAKYGHRRDVEGYGK
AIEDFDGRLPEIIDAMKEDDLLMITADHGNDPSYVGTDHTREYIPLVIFSKSFKEPKVLPVGHFADISATIAENFSVKKA
QTGESFLDALV

Sequences:

>Translated_411_residues
MPKKFGRIHLVVMDSVGIGAAPDADKFFNHDVETHEAINDVKSDTIGHISEIRGLDVPNLQKLGWGNIPRESPLKTIPAA
QKPAAYVTKLEEISKGKDTMTGHWEIMGLNIQTPFPTYPEGYPEDLLEKIEEFSGRKIIREANKPYSGTAVIEDFGPRQL
ETGELIIYTSADPVLQIAAHEDVISREELYKICEYVRSITLEGSGIMIGRIIARPYVGEAGNFERTDGRRDYALSPFAET
VLEKLYKAGIDTYSVGKISDIFNTVGVKYDMGHNHNDMDGVDRLLKAMTKTEFTEGFSFTNLVDFDAKYGHRRDVEGYGK
AIEDFDGRLPEIIDAMKEDDLLMITADHGNDPSYVGTDHTREYIPLVIFSKSFKEPKVLPVGHFADISATIAENFSVKKA
QTGESFLDALV
>Mature_410_residues
PKKFGRIHLVVMDSVGIGAAPDADKFFNHDVETHEAINDVKSDTIGHISEIRGLDVPNLQKLGWGNIPRESPLKTIPAAQ
KPAAYVTKLEEISKGKDTMTGHWEIMGLNIQTPFPTYPEGYPEDLLEKIEEFSGRKIIREANKPYSGTAVIEDFGPRQLE
TGELIIYTSADPVLQIAAHEDVISREELYKICEYVRSITLEGSGIMIGRIIARPYVGEAGNFERTDGRRDYALSPFAETV
LEKLYKAGIDTYSVGKISDIFNTVGVKYDMGHNHNDMDGVDRLLKAMTKTEFTEGFSFTNLVDFDAKYGHRRDVEGYGKA
IEDFDGRLPEIIDAMKEDDLLMITADHGNDPSYVGTDHTREYIPLVIFSKSFKEPKVLPVGHFADISATIAENFSVKKAQ
TGESFLDALV

Specific function: Phosphotransfer between the C1 and C5 carbon atoms of pentose [H]

COG id: COG1015

COG function: function code G; Phosphopentomutase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphopentomutase family [H]

Homologues:

Organism=Escherichia coli, GI1790843, Length=437, Percent_Identity=39.1304347826087, Blast_Score=269, Evalue=2e-73,
Organism=Escherichia coli, GI1789781, Length=435, Percent_Identity=27.816091954023, Blast_Score=116, Evalue=3e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017849
- InterPro:   IPR017850
- InterPro:   IPR010045
- InterPro:   IPR006124 [H]

Pfam domain/function: PF01676 Metalloenzyme [H]

EC number: =5.4.2.7 [H]

Molecular weight: Translated: 45818; Mature: 45687

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKKFGRIHLVVMDSVGIGAAPDADKFFNHDVETHEAINDVKSDTIGHISEIRGLDVPNL
CCCCCCEEEEEEEECCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCH
QKLGWGNIPRESPLKTIPAAQKPAAYVTKLEEISKGKDTMTGHWEIMGLNIQTPFPTYPE
HHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCC
GYPEDLLEKIEEFSGRKIIREANKPYSGTAVIEDFGPRQLETGELIIYTSADPVLQIAAH
CCCHHHHHHHHHHCCCHHHHHCCCCCCCCEEEECCCCCEECCCCEEEEECCCCEEEEECH
EDVISREELYKICEYVRSITLEGSGIMIGRIIARPYVGEAGNFERTDGRRDYALSPFAET
HHHHHHHHHHHHHHHHHHEECCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHH
VLEKLYKAGIDTYSVGKISDIFNTVGVKYDMGHNHNDMDGVDRLLKAMTKTEFTEGFSFT
HHHHHHHCCCCCCCCCHHHHHHHHHCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
NLVDFDAKYGHRRDVEGYGKAIEDFDGRLPEIIDAMKEDDLLMITADHGNDPSYVGTDHT
EEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEEECCCCCCCCCCCCCC
REYIPLVIFSKSFKEPKVLPVGHFADISATIAENFSVKKAQTGESFLDALV
CHHEEEEEEECCCCCCCEEECCCCHHHHHHHHHCCCCCCHHCHHHHHHHHC
>Mature Secondary Structure 
PKKFGRIHLVVMDSVGIGAAPDADKFFNHDVETHEAINDVKSDTIGHISEIRGLDVPNL
CCCCCEEEEEEEECCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCH
QKLGWGNIPRESPLKTIPAAQKPAAYVTKLEEISKGKDTMTGHWEIMGLNIQTPFPTYPE
HHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCC
GYPEDLLEKIEEFSGRKIIREANKPYSGTAVIEDFGPRQLETGELIIYTSADPVLQIAAH
CCCHHHHHHHHHHCCCHHHHHCCCCCCCCEEEECCCCCEECCCCEEEEECCCCEEEEECH
EDVISREELYKICEYVRSITLEGSGIMIGRIIARPYVGEAGNFERTDGRRDYALSPFAET
HHHHHHHHHHHHHHHHHHEECCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHH
VLEKLYKAGIDTYSVGKISDIFNTVGVKYDMGHNHNDMDGVDRLLKAMTKTEFTEGFSFT
HHHHHHHCCCCCCCCCHHHHHHHHHCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
NLVDFDAKYGHRRDVEGYGKAIEDFDGRLPEIIDAMKEDDLLMITADHGNDPSYVGTDHT
EEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEEECCCCCCCCCCCCCC
REYIPLVIFSKSFKEPKVLPVGHFADISATIAENFSVKKAQTGESFLDALV
CHHEEEEEEECCCCCCCEEECCCCHHHHHHHHHCCCCCCHHCHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11337471 [H]