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The map label for this gene is dnaD [H]

Identifier: 125624308

GI number: 125624308

Start: 1471987

End: 1472655

Strand: Reverse

Name: dnaD [H]

Synonym: llmg_1502

Alternate gene names: 125624308

Gene position: 1472655-1471987 (Counterclockwise)

Preceding gene: 125624309

Following gene: 125624307

Centisome position: 58.22

GC content: 37.37

Gene sequence:

>669_bases
ATGGATTATTACGATGAATATAGCAAAGGGCATTTAGTTTTACCAACGGTGATTTTGTCACATTTTAGTGAACTTTTCCC
TTCGGCTTTTGATTTTTTAGTATGGTTATACTTTTTTGAAAATCGAGAAATTGCGCCCAGCGAGATTGCGGATAAGACTG
GGAAAAAAATGTCTGAGGTTAATCAGGCGATTGATAGTTTGTCCAAATTTGGGGCAATGAAAGTTACATTGATTGAGATT
GATGGGGAAATGGAAACTTTCTTTGATATTAGTCCAGCCTTCAAGCATTTAGATGAACTAGTGGGTTCTCCGGCGCTAAA
TCTTAAAGCAGAGGATAAAAAAGTTCAAGATGAAGGTCAACTTAAAGAGTTGATTAGCATGTTTGAGGCGGAAATGGGGA
TGATTTCTCCTGTTCAAATGGAAGAATTGCGTGCTTGGCTTTTTGAGGATGGTTATGACTTGTCTTTGATAAAACAAGCC
TTACGAGAAGCGGTTTTAAATCGCAAAGTATCATTAAACTACATAAAAGCTATTTTGCGCAATTGGAAAAACGATGGGGT
TAATTCAGTTCAAGCGATTGAGAGTCGTCAAATGGAACGTGAAGAAGCTAAAAGGAAGAAACCGCAAGAAGATTTTTACA
TTCCTTTAGACGGACCTTGGAATGGATAA

Upstream 100 bases:

>100_bases
GATGCCGTTTTTTCTTTAATAAAGGATAATAATAAGATTCAATTTTATTGATTAAATACTCTATTTGAACCATAATGATA
CGGTATGCTATAATAGTTCT

Downstream 100 bases:

>100_bases
AATAGATAATGGACAAACATTATGTTAAGTAAAAAAAGATATCTTGAAGCTTTAGCAATCATTGAAGAAATGTTTCCCCA
AGCACATGGAGAACTGGTTT

Product: DNA replication protein dnaD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MDYYDEYSKGHLVLPTVILSHFSELFPSAFDFLVWLYFFENREIAPSEIADKTGKKMSEVNQAIDSLSKFGAMKVTLIEI
DGEMETFFDISPAFKHLDELVGSPALNLKAEDKKVQDEGQLKELISMFEAEMGMISPVQMEELRAWLFEDGYDLSLIKQA
LREAVLNRKVSLNYIKAILRNWKNDGVNSVQAIESRQMEREEAKRKKPQEDFYIPLDGPWNG

Sequences:

>Translated_222_residues
MDYYDEYSKGHLVLPTVILSHFSELFPSAFDFLVWLYFFENREIAPSEIADKTGKKMSEVNQAIDSLSKFGAMKVTLIEI
DGEMETFFDISPAFKHLDELVGSPALNLKAEDKKVQDEGQLKELISMFEAEMGMISPVQMEELRAWLFEDGYDLSLIKQA
LREAVLNRKVSLNYIKAILRNWKNDGVNSVQAIESRQMEREEAKRKKPQEDFYIPLDGPWNG
>Mature_222_residues
MDYYDEYSKGHLVLPTVILSHFSELFPSAFDFLVWLYFFENREIAPSEIADKTGKKMSEVNQAIDSLSKFGAMKVTLIEI
DGEMETFFDISPAFKHLDELVGSPALNLKAEDKKVQDEGQLKELISMFEAEMGMISPVQMEELRAWLFEDGYDLSLIKQA
LREAVLNRKVSLNYIKAILRNWKNDGVNSVQAIESRQMEREEAKRKKPQEDFYIPLDGPWNG

Specific function: Probable component of primosome involved in the initiation of DNA replication [H]

COG id: COG3935

COG function: function code L; Putative primosome component and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006343 [H]

Pfam domain/function: PF07261 DnaB_2 [H]

EC number: NA

Molecular weight: Translated: 25586; Mature: 25586

Theoretical pI: Translated: 4.50; Mature: 4.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDYYDEYSKGHLVLPTVILSHFSELFPSAFDFLVWLYFFENREIAPSEIADKTGKKMSEV
CCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
NQAIDSLSKFGAMKVTLIEIDGEMETFFDISPAFKHLDELVGSPALNLKAEDKKVQDEGQ
HHHHHHHHHCCCEEEEEEEECCCHHHHHCCCHHHHHHHHHHCCCCCCCCCCCHHCCCHHH
LKELISMFEAEMGMISPVQMEELRAWLFEDGYDLSLIKQALREAVLNRKVSLNYIKAILR
HHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHH
NWKNDGVNSVQAIESRQMEREEAKRKKPQEDFYIPLDGPWNG
HHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCC
>Mature Secondary Structure
MDYYDEYSKGHLVLPTVILSHFSELFPSAFDFLVWLYFFENREIAPSEIADKTGKKMSEV
CCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
NQAIDSLSKFGAMKVTLIEIDGEMETFFDISPAFKHLDELVGSPALNLKAEDKKVQDEGQ
HHHHHHHHHCCCEEEEEEEECCCHHHHHCCCHHHHHHHHHHCCCCCCCCCCCHHCCCHHH
LKELISMFEAEMGMISPVQMEELRAWLFEDGYDLSLIKQALREAVLNRKVSLNYIKAILR
HHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHH
NWKNDGVNSVQAIESRQMEREEAKRKKPQEDFYIPLDGPWNG
HHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7704260; 8760912; 9384377 [H]