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The map label for this gene is ykjF [H]

Identifier: 125624293

GI number: 125624293

Start: 1460139

End: 1460627

Strand: Reverse

Name: ykjF [H]

Synonym: llmg_1487

Alternate gene names: 125624293

Gene position: 1460627-1460139 (Counterclockwise)

Preceding gene: 125624294

Following gene: 125624292

Centisome position: 57.74

GC content: 37.42

Gene sequence:

>489_bases
ATGTACGTAGAATTAGTTGATGAAACAGGCCAAGTGCCAAGTGAGATTATTGAGCAAACTAAAGAAGTTTTAGCGTTTGC
CGCTAAAAAATTAGATTTAAAAGAATCAACAGAAATGTCTGTGACTTTTGTGGACAATGCGCGATCACATGAGTTGAATT
TGCAATATCGTGAAACTGATCGTCCAACAGATGTTATCTCACTAGAATATAAGCCTGATGAGTCAGAATTCTTTTTTGAC
GAAGATATGGAACTTCCAGAAGAGTTATTAGAAGAAATGGATCCATTTATTGGTGAGTTGTTCATTTCAATTGATAAAGC
TGCCGAACAAGCTGCCGACTATGGTCATTCGATAGAACGTGAGTATGGTTGGCTAGCAGTTCATGGTTTTTTGCATATAA
ATGGTTACGATCATTACACGCCAGAAGAAGAGTCAGAAATGTTTGCTTTGCAAGAGGAGATTTTAACTGCCTATGGACTC
ACACGATAA

Upstream 100 bases:

>100_bases
CATTAAATCATTGACTGCTAGGATAAATAAGCAAAAATAGAAAGCGCATGAGCTACTTTCTGACAGATTTGTCAGGAATA
AAATATAAATAAGGAATAAA

Downstream 100 bases:

>100_bases
AGATGTAAAACTCTTTAAGAAAAATGATTTTCATAAGGGAAAAACGCCTGTTCAAAAGGACAGAGCCCGCTGGAAAAATC
GAAATTTACTTTCGAGTTTA

Product: putative metalloprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 162; Mature: 162

Protein sequence:

>162_residues
MYVELVDETGQVPSEIIEQTKEVLAFAAKKLDLKESTEMSVTFVDNARSHELNLQYRETDRPTDVISLEYKPDESEFFFD
EDMELPEELLEEMDPFIGELFISIDKAAEQAADYGHSIEREYGWLAVHGFLHINGYDHYTPEEESEMFALQEEILTAYGL
TR

Sequences:

>Translated_162_residues
MYVELVDETGQVPSEIIEQTKEVLAFAAKKLDLKESTEMSVTFVDNARSHELNLQYRETDRPTDVISLEYKPDESEFFFD
EDMELPEELLEEMDPFIGELFISIDKAAEQAADYGHSIEREYGWLAVHGFLHINGYDHYTPEEESEMFALQEEILTAYGL
TR
>Mature_162_residues
MYVELVDETGQVPSEIIEQTKEVLAFAAKKLDLKESTEMSVTFVDNARSHELNLQYRETDRPTDVISLEYKPDESEFFFD
EDMELPEELLEEMDPFIGELFISIDKAAEQAADYGHSIEREYGWLAVHGFLHINGYDHYTPEEESEMFALQEEILTAYGL
TR

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity [H]

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family [H]

Homologues:

Organism=Escherichia coli, GI1786880, Length=126, Percent_Identity=35.7142857142857, Blast_Score=69, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036 [H]

Pfam domain/function: PF02130 UPF0054 [H]

EC number: NA

Molecular weight: Translated: 18785; Mature: 18785

Theoretical pI: Translated: 3.88; Mature: 3.88

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYVELVDETGQVPSEIIEQTKEVLAFAAKKLDLKESTEMSVTFVDNARSHELNLQYRETD
CEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCEEEEEECCCC
RPTDVISLEYKPDESEFFFDEDMELPEELLEEMDPFIGELFISIDKAAEQAADYGHSIER
CCCCEEEEEECCCCCCEECCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCHHHH
EYGWLAVHGFLHINGYDHYTPEEESEMFALQEEILTAYGLTR
CCCEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MYVELVDETGQVPSEIIEQTKEVLAFAAKKLDLKESTEMSVTFVDNARSHELNLQYRETD
CEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCEEEEEECCCC
RPTDVISLEYKPDESEFFFDEDMELPEELLEEMDPFIGELFISIDKAAEQAADYGHSIER
CCCCEEEEEECCCCCCEECCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCHHHH
EYGWLAVHGFLHINGYDHYTPEEESEMFALQEEILTAYGLTR
CCCEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11337471 [H]