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The map label for this gene is ycaM [H]

Identifier: 125624260

GI number: 125624260

Start: 1422000

End: 1423469

Strand: Reverse

Name: ycaM [H]

Synonym: llmg_1452

Alternate gene names: 125624260

Gene position: 1423469-1422000 (Counterclockwise)

Preceding gene: 125624261

Following gene: 125624259

Centisome position: 56.28

GC content: 37.76

Gene sequence:

>1470_bases
ATGGACACAAAAAAAATTAGATGGTTTACCGTCGCATTTATTGCCTTCAACATGGTTTGGGGCATGGGAAATGTTGTCAA
CAACTTTGCCCAACAAGGAATTACGGTTGTTACTTCATGGCTTTTGATTTTAGCTTTGTATTTTATTCCCTATGCATTGA
TAGTTGGTCAACTTTGTTCAACTTTCAAAGATAGTAAGGGTGGCGTAAGTTCTTGGGTTGAAAATACCAGTACAAAACGC
TTAGCTTACTATGCTGCGTGGACTTATTGGGTGGTTCATATTCCTTATTTGGCTCAAAAACCCCAAGCAATTTTGATTGC
TTTTGGCTGGGTTGGTCAAGGAAATGGGAATCTGGTCAGTCAAATGTCGATGACCGCTGTTGCTCTTATTTCGTTAGCAA
TTTTCTTAGCTTTCTTATGGTTATCGACAAAAGGGTTAAATACTCTGAAAGTTATTGGTGGACTTGCGGGAACAGCAATG
TTTGTTATGAGTTTACTTTTCATTGTCATGGCGATTGGAGCACCTTTTATCGCGAAAGATTTCCATATTGCAACGCCTGA
CATGGGAAATATTAAAACTTATATTCCTAAATTTGACTTTAGTTATTTCACAACTATTTCAATGCTAGTCTTTGCTGTCG
GTGGTGCTGAAAAAATTTCTCCTTATGTTAACCAAACTAAAAATCCGGCAAAAGAATTTCCAAGAGGAATGTTTTTACTT
GCTGGAATGGTTGGTATCTGTGCCGTTTTAGGTTCAATTGCTATGGGAATGATTTTCTCAAGTGGTAATTTACCAAAGGA
CTTGATGGCTAATGGGGCTTACGCTGCATTCCAAATCTTGGGTCAACACTTTGGTGTCGGAAACTTTTTAATGATTGTCT
ACGCTTTAACTAATGGTGTCGGACAAATCGCTGCCTTGGCTTTCTCTATTGATGCGCCATTACGTATTTTACTTGCCGAT
GCTGACCCAGAATATGTTCCAGCATGGTTGCGTAAAAAGACAAACAAAGGAACCCTTAAAAATGGTTATACATTAACAGG
AATTCTTGTAAGTATCATTATTCTTTTACCATTGCTTGGAATCGGTGATATGAATGAATTGGTTAAATGGTTGACTAACT
TGAACTCAGTCGTGATGCCAATGCGCTATCTTTGGGTCTTCTTTGCCTTTATTATGTTAAATCGGGCAGTTAAACACTTC
CAATCTGAATATAAATTTATCAAACAAAAACGTCTAGCTATGATTGCTGGCGCTTGGTGTTTCCTCTTTACACTCATTGC
TTGTGTTCTAGGAATGGTTCCAAAATTAGACTATGCTGCTAATCCATCTGCATGGTGGTTCCAACTCGCATCAAATATTT
TGACACCAATTGTTTTAATCTTACTTGGAATGCTCTTACCTTTCATTGCTCGTCGTGAACAAAGAAAAGCAACAAGTCTT
GATTTGGATACAATAGTTACACCAGATTAA

Upstream 100 bases:

>100_bases
GGGTCTGTAATATTTTATAATTTTAATGACGCTAAAAAGAAAGCGCTAAACAATAAATTGTCAATGTCCGCGATTTATTC
AAAAAAATTTAAGGAGTTTT

Downstream 100 bases:

>100_bases
TTAAAAAATCCCCTGATTTTCAGGGTTTTTTTTAATTAATTTCAGATTAGAGATAAAGAAGATGTATTCTTAAAAATATC
TCAGAATATATTTCAAAAAC

Product: putative amino-acid permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 489; Mature: 489

Protein sequence:

>489_residues
MDTKKIRWFTVAFIAFNMVWGMGNVVNNFAQQGITVVTSWLLILALYFIPYALIVGQLCSTFKDSKGGVSSWVENTSTKR
LAYYAAWTYWVVHIPYLAQKPQAILIAFGWVGQGNGNLVSQMSMTAVALISLAIFLAFLWLSTKGLNTLKVIGGLAGTAM
FVMSLLFIVMAIGAPFIAKDFHIATPDMGNIKTYIPKFDFSYFTTISMLVFAVGGAEKISPYVNQTKNPAKEFPRGMFLL
AGMVGICAVLGSIAMGMIFSSGNLPKDLMANGAYAAFQILGQHFGVGNFLMIVYALTNGVGQIAALAFSIDAPLRILLAD
ADPEYVPAWLRKKTNKGTLKNGYTLTGILVSIIILLPLLGIGDMNELVKWLTNLNSVVMPMRYLWVFFAFIMLNRAVKHF
QSEYKFIKQKRLAMIAGAWCFLFTLIACVLGMVPKLDYAANPSAWWFQLASNILTPIVLILLGMLLPFIARREQRKATSL
DLDTIVTPD

Sequences:

>Translated_489_residues
MDTKKIRWFTVAFIAFNMVWGMGNVVNNFAQQGITVVTSWLLILALYFIPYALIVGQLCSTFKDSKGGVSSWVENTSTKR
LAYYAAWTYWVVHIPYLAQKPQAILIAFGWVGQGNGNLVSQMSMTAVALISLAIFLAFLWLSTKGLNTLKVIGGLAGTAM
FVMSLLFIVMAIGAPFIAKDFHIATPDMGNIKTYIPKFDFSYFTTISMLVFAVGGAEKISPYVNQTKNPAKEFPRGMFLL
AGMVGICAVLGSIAMGMIFSSGNLPKDLMANGAYAAFQILGQHFGVGNFLMIVYALTNGVGQIAALAFSIDAPLRILLAD
ADPEYVPAWLRKKTNKGTLKNGYTLTGILVSIIILLPLLGIGDMNELVKWLTNLNSVVMPMRYLWVFFAFIMLNRAVKHF
QSEYKFIKQKRLAMIAGAWCFLFTLIACVLGMVPKLDYAANPSAWWFQLASNILTPIVLILLGMLLPFIARREQRKATSL
DLDTIVTPD
>Mature_489_residues
MDTKKIRWFTVAFIAFNMVWGMGNVVNNFAQQGITVVTSWLLILALYFIPYALIVGQLCSTFKDSKGGVSSWVENTSTKR
LAYYAAWTYWVVHIPYLAQKPQAILIAFGWVGQGNGNLVSQMSMTAVALISLAIFLAFLWLSTKGLNTLKVIGGLAGTAM
FVMSLLFIVMAIGAPFIAKDFHIATPDMGNIKTYIPKFDFSYFTTISMLVFAVGGAEKISPYVNQTKNPAKEFPRGMFLL
AGMVGICAVLGSIAMGMIFSSGNLPKDLMANGAYAAFQILGQHFGVGNFLMIVYALTNGVGQIAALAFSIDAPLRILLAD
ADPEYVPAWLRKKTNKGTLKNGYTLTGILVSIIILLPLLGIGDMNELVKWLTNLNSVVMPMRYLWVFFAFIMLNRAVKHF
QSEYKFIKQKRLAMIAGAWCFLFTLIACVLGMVPKLDYAANPSAWWFQLASNILTPIVLILLGMLLPFIARREQRKATSL
DLDTIVTPD

Specific function: Unknown

COG id: COG0531

COG function: function code E; Amino acid transporters

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily [H]

Homologues:

Organism=Escherichia coli, GI87081798, Length=476, Percent_Identity=58.4033613445378, Blast_Score=578, Evalue=1e-166,
Organism=Escherichia coli, GI48994921, Length=426, Percent_Identity=24.4131455399061, Blast_Score=106, Evalue=3e-24,
Organism=Escherichia coli, GI87082380, Length=443, Percent_Identity=21.4446952595937, Blast_Score=84, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004841
- InterPro:   IPR002293 [H]

Pfam domain/function: PF00324 AA_permease [H]

EC number: NA

Molecular weight: Translated: 53951; Mature: 53951

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTKKIRWFTVAFIAFNMVWGMGNVVNNFAQQGITVVTSWLLILALYFIPYALIVGQLCS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TFKDSKGGVSSWVENTSTKRLAYYAAWTYWVVHIPYLAQKPQAILIAFGWVGQGNGNLVS
HHCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHCCCCEEEEEEECEECCCCCHHH
QMSMTAVALISLAIFLAFLWLSTKGLNTLKVIGGLAGTAMFVMSLLFIVMAIGAPFIAKD
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCC
FHIATPDMGNIKTYIPKFDFSYFTTISMLVFAVGGAEKISPYVNQTKNPAKEFPRGMFLL
CEECCCCCCCCHHHCCCCCHHHHHHHHHHHHHCCCHHHHCHHHHCCCCCHHHCCHHHHHH
AGMVGICAVLGSIAMGMIFSSGNLPKDLMANGAYAAFQILGQHFGVGNFLMIVYALTNGV
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHCCH
GQIAALAFSIDAPLRILLADADPEYVPAWLRKKTNKGTLKNGYTLTGILVSIIILLPLLG
HHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCC
IGDMNELVKWLTNLNSVVMPMRYLWVFFAFIMLNRAVKHFQSEYKFIKQKRLAMIAGAWC
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLFTLIACVLGMVPKLDYAANPSAWWFQLASNILTPIVLILLGMLLPFIARREQRKATSL
HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DLDTIVTPD
CCCCCCCCC
>Mature Secondary Structure
MDTKKIRWFTVAFIAFNMVWGMGNVVNNFAQQGITVVTSWLLILALYFIPYALIVGQLCS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TFKDSKGGVSSWVENTSTKRLAYYAAWTYWVVHIPYLAQKPQAILIAFGWVGQGNGNLVS
HHCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHCCCCEEEEEEECEECCCCCHHH
QMSMTAVALISLAIFLAFLWLSTKGLNTLKVIGGLAGTAMFVMSLLFIVMAIGAPFIAKD
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCC
FHIATPDMGNIKTYIPKFDFSYFTTISMLVFAVGGAEKISPYVNQTKNPAKEFPRGMFLL
CEECCCCCCCCHHHCCCCCHHHHHHHHHHHHHCCCHHHHCHHHHCCCCCHHHCCHHHHHH
AGMVGICAVLGSIAMGMIFSSGNLPKDLMANGAYAAFQILGQHFGVGNFLMIVYALTNGV
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHCCH
GQIAALAFSIDAPLRILLADADPEYVPAWLRKKTNKGTLKNGYTLTGILVSIIILLPLLG
HHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCC
IGDMNELVKWLTNLNSVVMPMRYLWVFFAFIMLNRAVKHFQSEYKFIKQKRLAMIAGAWC
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLFTLIACVLGMVPKLDYAANPSAWWFQLASNILTPIVLILLGMLLPFIARREQRKATSL
HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DLDTIVTPD
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]