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The map label for this gene is msmR [H]

Identifier: 125624144

GI number: 125624144

Start: 1300331

End: 1300786

Strand: Direct

Name: msmR [H]

Synonym: llmg_1324

Alternate gene names: 125624144

Gene position: 1300331-1300786 (Clockwise)

Preceding gene: 125624142

Following gene: 125624162

Centisome position: 51.41

GC content: 31.14

Gene sequence:

>456_bases
ATGACAGAAAAACTTTTGATTGAATTAATGCTTAGTTTATATGATTACACCTTACTAGAGCAAAATATAGCTACATTATC
AGATAATTCATCGCTAATTTTAGCAAAATCAATCGCAGATACAATACAACAAAATTTTCGAACCTTTACTAAGCAACCTA
TCAAAGAAAACCAACAACTCCTCTCAATGCATGAGATAGCATATGCTTTAAATATAAGTGAAAGTACCATGTTGAAAGTC
TTTAGAAAAGTTTACTCAATTAGTCCTAAAAATTATCTAGATCAACTTCGTTACAACGAGTCAAAGTTTCTTCTTCATCA
ACCAAATCTTCCAATTAGCGAGATTGCTGAAACTATTGGATATCAGAATCTATCTCATTTTTCTCGACAATTTAAACAAT
GGAGCAATTTGTCTCCAAAGGAATATCGCGTTCATTTCCAAAAGAATGGTAGATAG

Upstream 100 bases:

>100_bases
ATTAAATAAAAATAATGATTCTTTTCCAAAAATAAAATCAGTTCTCCAAAAGTATATTACTCTCATTGAAACAAATACTT
TTTCTCTTAGGGAGAAATTA

Downstream 100 bases:

>100_bases
ATAAATAATTAAAAAACAAACTAATTAGACCCTCAGAATATAGACTTTTTATGTCTACAATTTTAGGGTCTTTTATTAAC
ATAAAACATTTTTTCTATTA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 151; Mature: 150

Protein sequence:

>151_residues
MTEKLLIELMLSLYDYTLLEQNIATLSDNSSLILAKSIADTIQQNFRTFTKQPIKENQQLLSMHEIAYALNISESTMLKV
FRKVYSISPKNYLDQLRYNESKFLLHQPNLPISEIAETIGYQNLSHFSRQFKQWSNLSPKEYRVHFQKNGR

Sequences:

>Translated_151_residues
MTEKLLIELMLSLYDYTLLEQNIATLSDNSSLILAKSIADTIQQNFRTFTKQPIKENQQLLSMHEIAYALNISESTMLKV
FRKVYSISPKNYLDQLRYNESKFLLHQPNLPISEIAETIGYQNLSHFSRQFKQWSNLSPKEYRVHFQKNGR
>Mature_150_residues
TEKLLIELMLSLYDYTLLEQNIATLSDNSSLILAKSIADTIQQNFRTFTKQPIKENQQLLSMHEIAYALNISESTMLKVF
RKVYSISPKNYLDQLRYNESKFLLHQPNLPISEIAETIGYQNLSHFSRQFKQWSNLSPKEYRVHFQKNGR

Specific function: Regulatory protein for the msm operon for multiple sugar metabolism. Activates the transcription of the msmEFGK, aga, dexB and gftA genes [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 17765; Mature: 17633

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEKLLIELMLSLYDYTLLEQNIATLSDNSSLILAKSIADTIQQNFRTFTKQPIKENQQL
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHCHHHHHHHH
LSMHEIAYALNISESTMLKVFRKVYSISPKNYLDQLRYNESKFLLHQPNLPISEIAETIG
HHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCEEEECCCCCHHHHHHHHC
YQNLSHFSRQFKQWSNLSPKEYRVHFQKNGR
CCHHHHHHHHHHHHCCCCCHHEEEEECCCCC
>Mature Secondary Structure 
TEKLLIELMLSLYDYTLLEQNIATLSDNSSLILAKSIADTIQQNFRTFTKQPIKENQQL
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHCHHHHHHHH
LSMHEIAYALNISESTMLKVFRKVYSISPKNYLDQLRYNESKFLLHQPNLPISEIAETIG
HHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCEEEECCCCCHHHHHHHHC
YQNLSHFSRQFKQWSNLSPKEYRVHFQKNGR
CCHHHHHHHHHHHHCCCCCHHEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1537846; 12397186 [H]