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The map label for this gene is xerS [H]

Identifier: 125624094

GI number: 125624094

Start: 1238314

End: 1239384

Strand: Direct

Name: xerS [H]

Synonym: llmg_1270

Alternate gene names: 125624094

Gene position: 1238314-1239384 (Clockwise)

Preceding gene: 125624093

Following gene: 125624109

Centisome position: 48.96

GC content: 35.11

Gene sequence:

>1071_bases
ATGAAACGTGAACAATTAATACAAAATATTGAAAAACTAAAGCATGTTATGCCTCCTTATGTTCTTGAATATTATCAATC
TAAACTTACTATTCCTTATAGTTTAAATACACTTTATGAATATTTAAAAGAATATGAACGCTTTTTTAGCTGGTTGGTGG
ACTCGGGGGTTGCTGATGTTGATAAAATAACTGACGTTTCACTCTCTGTTCTGGAAAACTTAACTAAACGAGATTTGGAG
TCGTTTATTCTCTATCTTAGGGAAAGGCCACGCTTAAATACCCATTCTACACGCTATGGGGTTAGCCAAACGACGATTAA
TCGTACTTTATCAGCTCTTTCTAGTCTTTATAAATACCTTACTGAGGAGGTTGAAAATGAAGATGGTGAGCCTTACTTCT
ATCGTAATGTTATGAAAAAAGTACAAACGAAGAAAAAATCTGAAACTTTAGCTTCTCGTGCTGAAAATATCAAAGGAAAA
TTATTTTTAGGAGATGAAACTCAGGGTTTCCTTGATTATATTGATAGTGAATATGAGAAAACATTATCAAATCGAGCCCG
CTCTAGTTTTTTCAAAAATAAAGAACGGGATTTAGCAATTATTGCCCTTATTTTAGCTTCTGGTATTCGTTTATCTGAGG
CAGTTAATGTTGATTTAAGAGATTTAAATCTTAACACTATGATTGTTGAAGTTACTCGTAAGGGAGGTAAAAGGGATGCT
GTTCCTTTTGCTCCTTTTGCCAAAACTTATTTTGAGCGCTATTTAGAGGTACGCAGTCAACGTTATAAAACAACTGCCAA
AGATACTGCATTTTTTGTCACTCTTTATCGTGATATAGCCAGTCGAATCGATCCGTCTAGTGTTGAAAAGTTAGTCGCTA
AATATTCACAAGCTTTTAAAGTTAGGGTGACACCTCACAAACTAAGACATACTCTTGCAACTCGGCTTTACGCTCAGACA
AATTCGCAGGTGTTGGTGAGTAATCAGCTAGGTCATGCTTCAACTCAGGTAACCGACCTCTATACGCATATCATTAATGA
GGAGCAAAAAAATGCCTTAGATAGTCTTTAA

Upstream 100 bases:

>100_bases
AAAAGGTGTGACACAGAACTCCTATATGTTTTAAGTAACATCTTTCCGAAAAACTGTAATTTTCTTGACAATTGGATATC
TCTTCTGGTATACTTAATCT

Downstream 100 bases:

>100_bases
AGTAATATATAAAAAAGCGCTTGATAAGCTTCAAGCGTTTTTTTATATATTATGCTAAATTTTCTTTTGAGATGATATCT
GTTAAAGTATTTAACGAACG

Product: site-specific tyrosine recombinase XerS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 356; Mature: 356

Protein sequence:

>356_residues
MKREQLIQNIEKLKHVMPPYVLEYYQSKLTIPYSLNTLYEYLKEYERFFSWLVDSGVADVDKITDVSLSVLENLTKRDLE
SFILYLRERPRLNTHSTRYGVSQTTINRTLSALSSLYKYLTEEVENEDGEPYFYRNVMKKVQTKKKSETLASRAENIKGK
LFLGDETQGFLDYIDSEYEKTLSNRARSSFFKNKERDLAIIALILASGIRLSEAVNVDLRDLNLNTMIVEVTRKGGKRDA
VPFAPFAKTYFERYLEVRSQRYKTTAKDTAFFVTLYRDIASRIDPSSVEKLVAKYSQAFKVRVTPHKLRHTLATRLYAQT
NSQVLVSNQLGHASTQVTDLYTHIINEEQKNALDSL

Sequences:

>Translated_356_residues
MKREQLIQNIEKLKHVMPPYVLEYYQSKLTIPYSLNTLYEYLKEYERFFSWLVDSGVADVDKITDVSLSVLENLTKRDLE
SFILYLRERPRLNTHSTRYGVSQTTINRTLSALSSLYKYLTEEVENEDGEPYFYRNVMKKVQTKKKSETLASRAENIKGK
LFLGDETQGFLDYIDSEYEKTLSNRARSSFFKNKERDLAIIALILASGIRLSEAVNVDLRDLNLNTMIVEVTRKGGKRDA
VPFAPFAKTYFERYLEVRSQRYKTTAKDTAFFVTLYRDIASRIDPSSVEKLVAKYSQAFKVRVTPHKLRHTLATRLYAQT
NSQVLVSNQLGHASTQVTDLYTHIINEEQKNALDSL
>Mature_356_residues
MKREQLIQNIEKLKHVMPPYVLEYYQSKLTIPYSLNTLYEYLKEYERFFSWLVDSGVADVDKITDVSLSVLENLTKRDLE
SFILYLRERPRLNTHSTRYGVSQTTINRTLSALSSLYKYLTEEVENEDGEPYFYRNVMKKVQTKKKSETLASRAENIKGK
LFLGDETQGFLDYIDSEYEKTLSNRARSSFFKNKERDLAIIALILASGIRLSEAVNVDLRDLNLNTMIVEVTRKGGKRDA
VPFAPFAKTYFERYLEVRSQRYKTTAKDTAFFVTLYRDIASRIDPSSVEKLVAKYSQAFKVRVTPHKLRHTLATRLYAQT
NSQVLVSNQLGHASTQVTDLYTHIINEEQKNALDSL

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. Essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerS subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=151, Percent_Identity=32.4503311258278, Blast_Score=85, Evalue=8e-18,
Organism=Escherichia coli, GI1789261, Length=167, Percent_Identity=29.3413173652695, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 41308; Mature: 41308

Theoretical pI: Translated: 9.61; Mature: 9.61

Prosite motif: PS00136 SUBTILASE_ASP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKREQLIQNIEKLKHVMPPYVLEYYQSKLTIPYSLNTLYEYLKEYERFFSWLVDSGVADV
CCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCHH
DKITDVSLSVLENLTKRDLESFILYLRERPRLNTHSTRYGVSQTTINRTLSALSSLYKYL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
TEEVENEDGEPYFYRNVMKKVQTKKKSETLASRAENIKGKLFLGDETQGFLDYIDSEYEK
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
TLSNRARSSFFKNKERDLAIIALILASGIRLSEAVNVDLRDLNLNTMIVEVTRKGGKRDA
HHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHCCCEEEECCCCEEEEEEECCCCCCCC
VPFAPFAKTYFERYLEVRSQRYKTTAKDTAFFVTLYRDIASRIDPSSVEKLVAKYSQAFK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHE
VRVTPHKLRHTLATRLYAQTNSQVLVSNQLGHASTQVTDLYTHIINEEQKNALDSL
EEECHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCHHHHHHHCCC
>Mature Secondary Structure
MKREQLIQNIEKLKHVMPPYVLEYYQSKLTIPYSLNTLYEYLKEYERFFSWLVDSGVADV
CCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCHH
DKITDVSLSVLENLTKRDLESFILYLRERPRLNTHSTRYGVSQTTINRTLSALSSLYKYL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
TEEVENEDGEPYFYRNVMKKVQTKKKSETLASRAENIKGKLFLGDETQGFLDYIDSEYEK
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
TLSNRARSSFFKNKERDLAIIALILASGIRLSEAVNVDLRDLNLNTMIVEVTRKGGKRDA
HHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHCCCEEEECCCCEEEEEEECCCCCCCC
VPFAPFAKTYFERYLEVRSQRYKTTAKDTAFFVTLYRDIASRIDPSSVEKLVAKYSQAFK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHE
VRVTPHKLRHTLATRLYAQTNSQVLVSNQLGHASTQVTDLYTHIINEEQKNALDSL
EEECHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11337471 [H]