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The map label for this gene is ynbD [H]

Identifier: 125624018

GI number: 125624018

Start: 1159956

End: 1160561

Strand: Direct

Name: ynbD [H]

Synonym: llmg_1188

Alternate gene names: 125624018

Gene position: 1159956-1160561 (Clockwise)

Preceding gene: 125624017

Following gene: 125624019

Centisome position: 45.86

GC content: 37.62

Gene sequence:

>606_bases
ATGGAAAATACACTTATTATTGCGACTAGAAATCCTGGTAAAACAAAAGAATTTAAAAAATTATTTGCTGACTTTGGTTA
TGAAATTAAAGACTTATCAGACTACCCAGAACTTCCTGAAATTGAAGAAACAGGAAGTACTTTTGAAGAAAATGCTCGCT
TAAAAGCAGAACAAATTGCTGAGTTGACTGGACAAGTAGTTATTGGAGACGATTCAGGACTATGTGTTGATGTACTAGGT
GGTTTGCCAGGCATTTGGTCACACCGTTTTTCAGCACCAGACCCTACTGATGAGAAAAATATTGCTAAACTTTTGCATGA
ACTTGCTCCGACAGCAATTACACCAGAACGTAGAAGCGCTCATTTCCATACTACTTTAGTAGCGGCAAGACCTAATCACG
ACAGCTTAGTTGTTGAAGCTGATTGGAATGGCTATATCGCCCTTGCTCCTAAAGGGGAAAATGGCTTTGGTTATGATCCT
GTTTTTATGGTTGATGCTTTCAGAACCGCTGCAGAATTATCAGAAAAAGAAAAAAATCAACTTTCACATCGAGGTCAAGC
ACTAAGAAAATTAATGCAAGAACTTCCAGAATGGTTAGAGAAATAA

Upstream 100 bases:

>100_bases
AGGGGTCAATTCTTTTCGAGAAATTGCAGAAAAATGGTTAAATATAGGACATCTTCATATTGAACATGCCGAAATAGAGA
ATTTCAATAAGGAAAAATAA

Downstream 100 bases:

>100_bases
ACTTAACATAAAATTAATTATGTAAAAGAGGGGTGCTTATGTTTGTAGTAATGTCTGATTCACACTATGATCGTGAAGTG
GTTGAATCTATAAAATCTAA

Product: hypothetical protein

Products: NA

Alternate protein names: Nucleoside triphosphate phosphohydrolase; NTPase [H]

Number of amino acids: Translated: 201; Mature: 201

Protein sequence:

>201_residues
MENTLIIATRNPGKTKEFKKLFADFGYEIKDLSDYPELPEIEETGSTFEENARLKAEQIAELTGQVVIGDDSGLCVDVLG
GLPGIWSHRFSAPDPTDEKNIAKLLHELAPTAITPERRSAHFHTTLVAARPNHDSLVVEADWNGYIALAPKGENGFGYDP
VFMVDAFRTAAELSEKEKNQLSHRGQALRKLMQELPEWLEK

Sequences:

>Translated_201_residues
MENTLIIATRNPGKTKEFKKLFADFGYEIKDLSDYPELPEIEETGSTFEENARLKAEQIAELTGQVVIGDDSGLCVDVLG
GLPGIWSHRFSAPDPTDEKNIAKLLHELAPTAITPERRSAHFHTTLVAARPNHDSLVVEADWNGYIALAPKGENGFGYDP
VFMVDAFRTAAELSEKEKNQLSHRGQALRKLMQELPEWLEK
>Mature_201_residues
MENTLIIATRNPGKTKEFKKLFADFGYEIKDLSDYPELPEIEETGSTFEENARLKAEQIAELTGQVVIGDDSGLCVDVLG
GLPGIWSHRFSAPDPTDEKNIAKLLHELAPTAITPERRSAHFHTTLVAARPNHDSLVVEADWNGYIALAPKGENGFGYDP
VFMVDAFRTAAELSEKEKNQLSHRGQALRKLMQELPEWLEK

Specific function: Hydrolyzes non-standard nucleotides such as XTP and dITP/ITP. Might exclude non-standard purines from DNA precursor pool, preventing thus incorporation into DNA and avoiding chromosomal lesions [H]

COG id: COG0127

COG function: function code F; Xanthosine triphosphate pyrophosphatase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HAM1 NTPase family [H]

Homologues:

Organism=Escherichia coli, GI1789324, Length=194, Percent_Identity=46.9072164948454, Blast_Score=161, Evalue=3e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002637
- InterPro:   IPR020922 [H]

Pfam domain/function: PF01725 Ham1p_like [H]

EC number: =3.6.1.15 [H]

Molecular weight: Translated: 22432; Mature: 22432

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENTLIIATRNPGKTKEFKKLFADFGYEIKDLSDYPELPEIEETGSTFEENARLKAEQIA
CCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCHHHHCCCCHHHHH
ELTGQVVIGDDSGLCVDVLGGLPGIWSHRFSAPDPTDEKNIAKLLHELAPTAITPERRSA
HHHCCEEEECCCCCHHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
HFHTTLVAARPNHDSLVVEADWNGYIALAPKGENGFGYDPVFMVDAFRTAAELSEKEKNQ
EEEEEEEEECCCCCCEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
LSHRGQALRKLMQELPEWLEK
HHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MENTLIIATRNPGKTKEFKKLFADFGYEIKDLSDYPELPEIEETGSTFEENARLKAEQIA
CCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCHHHHCCCCHHHHH
ELTGQVVIGDDSGLCVDVLGGLPGIWSHRFSAPDPTDEKNIAKLLHELAPTAITPERRSA
HHHCCEEEECCCCCHHHHHCCCCCHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
HFHTTLVAARPNHDSLVVEADWNGYIALAPKGENGFGYDPVFMVDAFRTAAELSEKEKNQ
EEEEEEEEECCCCCCEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
LSHRGQALRKLMQELPEWLEK
HHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11337471 [H]