| Definition | Methanocorpusculum labreanum Z chromosome, complete genome. |
|---|---|
| Accession | NC_008942 |
| Length | 1,804,962 |
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The map label for this gene is 124485563
Identifier: 124485563
GI number: 124485563
Start: 724599
End: 725780
Strand: Reverse
Name: 124485563
Synonym: Mlab_0741
Alternate gene names: NA
Gene position: 725780-724599 (Counterclockwise)
Preceding gene: 124485564
Following gene: 124485552
Centisome position: 40.21
GC content: 49.92
Gene sequence:
>1182_bases ATGAGGGCACGGACTCTTATTCTGAGCATTGACAGAGATGACGACGTGGGATATAAGGCCGGCGTGGAGAGCCCCGCGGT TGGAAGGGAAGCCTGCCTCGATGCGGCAATACGCCTTGGAACAGCTGATCCTGAAGATTCCGATACGAATGCCATTTTTC AGGCCATAAAAACCTACGATGAGCTGAAGGAGAACGGCGAAGACGTGGAAGTCGCCGTGATCGGTGGAAATCACATGAAC ATGCTCGAAGGGGACAGGAGAGTCAGCGAGCTTCTTGAACAGGTCATCGAAACCACCGGTGTGACCGAATGTATCCTCAT CTCCGACGGAGCGGAGGATGAATACGTCCTCCCGATCATCCAGTCCCACATCAAAGTGGCGAGCGTTGTCCGGGTAATAA TCAAACAGCTCCCGAACATCGAAGGCACATATTATATCATCAAGAAACTGATGAACGATCCAAAAATCGCAAAAAGCGTT CTGCTCCCAATCGGTTTCGTCCTTCTTCTCTACGCTCTTGTTGCCCTGCTTGCACCCGGCGTTTCCGCAACTCTTGTGGC GGTTGGAATCATCGGTATATATCTCCTCTTTAAGGGATTCAATTTTGACGAGTACTTCATTTATGCAGGACATGCGGTCA TCGAATCATTCAAAAAAGGCCAGTTCTCCTTCGTTGCCTATCTGGTAGCCGTGATCCTGGTCATCGGAGGTGTCATCTCG GGACTGATGAGCGTAATTACCAATTACCCAAACTCGGGAGATGTGGGTGTCCTCTACCTTGCACTGACATTCCTCTTTGG AGCGGTCATCTGGGTCATCATCGCCGCCCTTGTCGCCGCCGCCGGAAAGATCACGGATTACATCCAGAATAATCAGGAAG GTATTTCCAGAATATTCGTCGTGCCGTTCTTTGTCGTTGCCATAGGAATGATCACTTACGGCGCCGTGATCTACTTCCTC TCCATCGCACCGGTAGAACCATTTCCGTTCACCACTACAGACGGGATCATCGCAATGATGCTTCTTACCGTCACCGGCCT TGCAGTCGCTTTTATGGGCATCTACTTCAGACCCCGGGTGCAGAAAAGAGTTCAGACCTGGATGGAGATCCGGGAGAGAC TTGAGGAAGAGGAAACATCAGGAAATAAAGGAAAACCCGTATATAAAAAAGTAAAATACTAA
Upstream 100 bases:
>100_bases TTCAGCGCTCAAAGCTTATCTGAAGTTTTCAAATATAACCTATATTTTTTCCCGCTTTTTTCCCACAGATATTTAATCCA TAAATGGTAACTGTATAACA
Downstream 100 bases:
>100_bases TAGGACTTACGCGGTGTTAATCACAATTCAATTCGGAAGGGAGATTGTCCGGTTTGGACACCTGAATTTGACAGTTTGTG GAAATACCACTTAATGAATA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 393; Mature: 393
Protein sequence:
>393_residues MRARTLILSIDRDDDVGYKAGVESPAVGREACLDAAIRLGTADPEDSDTNAIFQAIKTYDELKENGEDVEVAVIGGNHMN MLEGDRRVSELLEQVIETTGVTECILISDGAEDEYVLPIIQSHIKVASVVRVIIKQLPNIEGTYYIIKKLMNDPKIAKSV LLPIGFVLLLYALVALLAPGVSATLVAVGIIGIYLLFKGFNFDEYFIYAGHAVIESFKKGQFSFVAYLVAVILVIGGVIS GLMSVITNYPNSGDVGVLYLALTFLFGAVIWVIIAALVAAAGKITDYIQNNQEGISRIFVVPFFVVAIGMITYGAVIYFL SIAPVEPFPFTTTDGIIAMMLLTVTGLAVAFMGIYFRPRVQKRVQTWMEIRERLEEEETSGNKGKPVYKKVKY
Sequences:
>Translated_393_residues MRARTLILSIDRDDDVGYKAGVESPAVGREACLDAAIRLGTADPEDSDTNAIFQAIKTYDELKENGEDVEVAVIGGNHMN MLEGDRRVSELLEQVIETTGVTECILISDGAEDEYVLPIIQSHIKVASVVRVIIKQLPNIEGTYYIIKKLMNDPKIAKSV LLPIGFVLLLYALVALLAPGVSATLVAVGIIGIYLLFKGFNFDEYFIYAGHAVIESFKKGQFSFVAYLVAVILVIGGVIS GLMSVITNYPNSGDVGVLYLALTFLFGAVIWVIIAALVAAAGKITDYIQNNQEGISRIFVVPFFVVAIGMITYGAVIYFL SIAPVEPFPFTTTDGIIAMMLLTVTGLAVAFMGIYFRPRVQKRVQTWMEIRERLEEEETSGNKGKPVYKKVKY >Mature_393_residues MRARTLILSIDRDDDVGYKAGVESPAVGREACLDAAIRLGTADPEDSDTNAIFQAIKTYDELKENGEDVEVAVIGGNHMN MLEGDRRVSELLEQVIETTGVTECILISDGAEDEYVLPIIQSHIKVASVVRVIIKQLPNIEGTYYIIKKLMNDPKIAKSV LLPIGFVLLLYALVALLAPGVSATLVAVGIIGIYLLFKGFNFDEYFIYAGHAVIESFKKGQFSFVAYLVAVILVIGGVIS GLMSVITNYPNSGDVGVLYLALTFLFGAVIWVIIAALVAAAGKITDYIQNNQEGISRIFVVPFFVVAIGMITYGAVIYFL SIAPVEPFPFTTTDGIIAMMLLTVTGLAVAFMGIYFRPRVQKRVQTWMEIRERLEEEETSGNKGKPVYKKVKY
Specific function: Unknown
COG id: COG2237
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To M.jannaschii MJ1032 [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007254 [H]
Pfam domain/function: PF04123 DUF373 [H]
EC number: NA
Molecular weight: Translated: 43032; Mature: 43032
Theoretical pI: Translated: 4.74; Mature: 4.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRARTLILSIDRDDDVGYKAGVESPAVGREACLDAAIRLGTADPEDSDTNAIFQAIKTYD CCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH ELKENGEDVEVAVIGGNHMNMLEGDRRVSELLEQVIETTGVTECILISDGAEDEYVLPII HHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEHHHH QSHIKVASVVRVIIKQLPNIEGTYYIIKKLMNDPKIAKSVLLPIGFVLLLYALVALLAPG HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCC VSATLVAVGIIGIYLLFKGFNFDEYFIYAGHAVIESFKKGQFSFVAYLVAVILVIGGVIS HHHHHHHHHHHHHHHHHHCCCCCHHHEEECHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH GLMSVITNYPNSGDVGVLYLALTFLFGAVIWVIIAALVAAAGKITDYIQNNQEGISRIFV HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH VPFFVVAIGMITYGAVIYFLSIAPVEPFPFTTTDGIIAMMLLTVTGLAVAFMGIYFRPRV HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHH QKRVQTWMEIRERLEEEETSGNKGKPVYKKVKY HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCC >Mature Secondary Structure MRARTLILSIDRDDDVGYKAGVESPAVGREACLDAAIRLGTADPEDSDTNAIFQAIKTYD CCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH ELKENGEDVEVAVIGGNHMNMLEGDRRVSELLEQVIETTGVTECILISDGAEDEYVLPII HHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEHHHH QSHIKVASVVRVIIKQLPNIEGTYYIIKKLMNDPKIAKSVLLPIGFVLLLYALVALLAPG HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCC VSATLVAVGIIGIYLLFKGFNFDEYFIYAGHAVIESFKKGQFSFVAYLVAVILVIGGVIS HHHHHHHHHHHHHHHHHHCCCCCHHHEEECHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH GLMSVITNYPNSGDVGVLYLALTFLFGAVIWVIIAALVAAAGKITDYIQNNQEGISRIFV HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH VPFFVVAIGMITYGAVIYFLSIAPVEPFPFTTTDGIIAMMLLTVTGLAVAFMGIYFRPRV HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHH QKRVQTWMEIRERLEEEETSGNKGKPVYKKVKY HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9389475 [H]