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The map label for this gene is ychF [C]

Identifier: 124485449

GI number: 124485449

Start: 600023

End: 601195

Strand: Reverse

Name: ychF [C]

Synonym: Mlab_0624

Alternate gene names: 124485449

Gene position: 601195-600023 (Counterclockwise)

Preceding gene: 124485450

Following gene: 124485448

Centisome position: 33.31

GC content: 53.88

Gene sequence:

>1173_bases
ATGTTACAAATTGCACTGGCTGGAAAACCAAACTGCGGCAAATCAACGTTTTATAAATCGCTGACTCTTGCAAATGTCGA
TATCGCCAATTATCCGTTCACGACCGTGAACCCGAACAAAGGGGTCGCCTATGTTCGGACGAGATGTCCGTGTAAGGAAC
TCGGGATCGAAGGATGTACTGAATGTATCGACGGAAACCGGTTTATTCCGGTCGAACTCATCGATGTGGCGGGCCTTGTC
CCCGATGCGCATTTAGGCCGCGGTCTTGGAAACCAATTCCTCGACACCCTTCGCGAGGCGGATGCGATCATTCAGGTCGT
TGACGCTTCCGGAAGCACGGACGCCGAAGGAAACCCGGTCGATATCGGGACCCGGAACCCCATCGAAGATGTCGAGTTTC
TGCGCTACGAGTTCGCCATGTGGATGGCGGGGATCGTCGAGAAGCACCGTCCCCGGCTCGTCCGTCAGGCGCAGGGAAAA
GAGCAGGTCCTGATCGATCTTTTAGGGGAAGCACTTGCGGGTCTTCGGATCAACGCGATCCAGATCAAAGAGGCGGTCGA
CGAATGCGGGATCAATCTCGCTAAGGCAACGCCGGAAGACATCGAGAAGATGTGCGAAGTTCTGCTCCGCGTTTCAAAAC
CGATGATCATTGCGGCAAACAAGGCCGATCTTGCTTCTGATGAAAACATCGAGGCACTCAAGGTTCTCGGCGCCGTCCCG
ACGATCGCGGCCGGCGAACTTGCTCTGAAAAGTGCCGCACATGCAAAGATCCTGAGATATCTTCCGGGAGATTCCAGTTT
CGCTCCGATCGAGGGAGCAAAACTTTCCGCACCCCAGGTAAAAGCCCTGACGATGATCGCCGAGCACATGAAAAAGTTCG
GAAGCACCGGCGTTCAGGAGATCTTAAACAAGATCGTCTTCGAGGATATCGGCATGATCGTGGTCTACCCGGTGGAAGAC
GACAACAAATACTGCAATGCGAAAGGGCAGGTCCTGCCGGATGCATTCCTTATGCCGATCGGATCGAACCCCAAAGACAT
GGCATTCCGCGTCCACACGGATATCGGGAACGGATTTTTGTATGCGGTCGATGCCCGCACGAAGATGCGGATCAAGGATA
CGACCGAACTGAAGTCCGGCGACATCATCAAGATCGTCAGTACCGCAAAATAA

Upstream 100 bases:

>100_bases
CATTTCACAGAAAACTGACTTTGGTCTTCTACACAACACATAAGAGTTCATCGGCCCTAATTATAGGTCAGAGATACCTC
GATACAAGGAAAGATACACA

Downstream 100 bases:

>100_bases
CCCCTCTTTTTTGGCAAATCTATATATCGGATAACTCCCTAATGTAGAATACTTATGGGAAGCGAAGTCTATCAGGCTCA
GGTCCTCCGGGCGTTTTTCG

Product: translation-associated GTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 390; Mature: 390

Protein sequence:

>390_residues
MLQIALAGKPNCGKSTFYKSLTLANVDIANYPFTTVNPNKGVAYVRTRCPCKELGIEGCTECIDGNRFIPVELIDVAGLV
PDAHLGRGLGNQFLDTLREADAIIQVVDASGSTDAEGNPVDIGTRNPIEDVEFLRYEFAMWMAGIVEKHRPRLVRQAQGK
EQVLIDLLGEALAGLRINAIQIKEAVDECGINLAKATPEDIEKMCEVLLRVSKPMIIAANKADLASDENIEALKVLGAVP
TIAAGELALKSAAHAKILRYLPGDSSFAPIEGAKLSAPQVKALTMIAEHMKKFGSTGVQEILNKIVFEDIGMIVVYPVED
DNKYCNAKGQVLPDAFLMPIGSNPKDMAFRVHTDIGNGFLYAVDARTKMRIKDTTELKSGDIIKIVSTAK

Sequences:

>Translated_390_residues
MLQIALAGKPNCGKSTFYKSLTLANVDIANYPFTTVNPNKGVAYVRTRCPCKELGIEGCTECIDGNRFIPVELIDVAGLV
PDAHLGRGLGNQFLDTLREADAIIQVVDASGSTDAEGNPVDIGTRNPIEDVEFLRYEFAMWMAGIVEKHRPRLVRQAQGK
EQVLIDLLGEALAGLRINAIQIKEAVDECGINLAKATPEDIEKMCEVLLRVSKPMIIAANKADLASDENIEALKVLGAVP
TIAAGELALKSAAHAKILRYLPGDSSFAPIEGAKLSAPQVKALTMIAEHMKKFGSTGVQEILNKIVFEDIGMIVVYPVED
DNKYCNAKGQVLPDAFLMPIGSNPKDMAFRVHTDIGNGFLYAVDARTKMRIKDTTELKSGDIIKIVSTAK
>Mature_390_residues
MLQIALAGKPNCGKSTFYKSLTLANVDIANYPFTTVNPNKGVAYVRTRCPCKELGIEGCTECIDGNRFIPVELIDVAGLV
PDAHLGRGLGNQFLDTLREADAIIQVVDASGSTDAEGNPVDIGTRNPIEDVEFLRYEFAMWMAGIVEKHRPRLVRQAQGK
EQVLIDLLGEALAGLRINAIQIKEAVDECGINLAKATPEDIEKMCEVLLRVSKPMIIAANKADLASDENIEALKVLGAVP
TIAAGELALKSAAHAKILRYLPGDSSFAPIEGAKLSAPQVKALTMIAEHMKKFGSTGVQEILNKIVFEDIGMIVVYPVED
DNKYCNAKGQVLPDAFLMPIGSNPKDMAFRVHTDIGNGFLYAVDARTKMRIKDTTELKSGDIIKIVSTAK

Specific function: Unknown

COG id: COG0012

COG function: function code J; Predicted GTPase, probable translation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI58761500, Length=392, Percent_Identity=23.9795918367347, Blast_Score=80, Evalue=3e-15,
Organism=Escherichia coli, GI1787454, Length=164, Percent_Identity=34.1463414634146, Blast_Score=92, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI17552324, Length=146, Percent_Identity=33.5616438356164, Blast_Score=73, Evalue=3e-13,
Organism=Saccharomyces cerevisiae, GI6321649, Length=361, Percent_Identity=35.1800554016621, Blast_Score=184, Evalue=2e-47,
Organism=Saccharomyces cerevisiae, GI6321773, Length=322, Percent_Identity=26.3975155279503, Blast_Score=69, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6319499, Length=264, Percent_Identity=27.2727272727273, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24640873, Length=229, Percent_Identity=28.82096069869, Blast_Score=78, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24640877, Length=229, Percent_Identity=28.82096069869, Blast_Score=78, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24640875, Length=229, Percent_Identity=28.82096069869, Blast_Score=78, Evalue=1e-14,

Paralogues:

None

Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012675
- InterPro:   IPR006073
- InterPro:   IPR013646
- InterPro:   IPR002917
- InterPro:   IPR004095
- InterPro:   IPR012676 [H]

Pfam domain/function: PF01926 MMR_HSR1; PF08438 MMR_HSR1_C; PF02824 TGS [H]

EC number: NA

Molecular weight: Translated: 42222; Mature: 42222

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQIALAGKPNCGKSTFYKSLTLANVDIANYPFTTVNPNKGVAYVRTRCPCKELGIEGCT
CEEEEECCCCCCCCHHHHHEEEEEEEEECCCCCEEECCCCCEEEEEECCCHHHHCHHHHH
ECIDGNRFIPVELIDVAGLVPDAHLGRGLGNQFLDTLREADAIIQVVDASGSTDAEGNPV
HHHCCCEEEEEEEEHHHCCCCCHHHCCCCCHHHHHHHHHHHHEEEEEECCCCCCCCCCCE
DIGTRNPIEDVEFLRYEFAMWMAGIVEKHRPRLVRQAQGKEQVLIDLLGEALAGLRINAI
ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCEEEEE
QIKEAVDECGINLAKATPEDIEKMCEVLLRVSKPMIIAANKADLASDENIEALKVLGAVP
HHHHHHHHHCCEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHCCC
TIAAGELALKSAAHAKILRYLPGDSSFAPIEGAKLSAPQVKALTMIAEHMKKFGSTGVQE
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHH
ILNKIVFEDIGMIVVYPVEDDNKYCNAKGQVLPDAFLMPIGSNPKDMAFRVHTDIGNGFL
HHHHHHHHCCCEEEEEEECCCCCEECCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCEE
YAVDARTKMRIKDTTELKSGDIIKIVSTAK
EEEECCEEEEECCCCCCCCCCEEEEEECCC
>Mature Secondary Structure
MLQIALAGKPNCGKSTFYKSLTLANVDIANYPFTTVNPNKGVAYVRTRCPCKELGIEGCT
CEEEEECCCCCCCCHHHHHEEEEEEEEECCCCCEEECCCCCEEEEEECCCHHHHCHHHHH
ECIDGNRFIPVELIDVAGLVPDAHLGRGLGNQFLDTLREADAIIQVVDASGSTDAEGNPV
HHHCCCEEEEEEEEHHHCCCCCHHHCCCCCHHHHHHHHHHHHEEEEEECCCCCCCCCCCE
DIGTRNPIEDVEFLRYEFAMWMAGIVEKHRPRLVRQAQGKEQVLIDLLGEALAGLRINAI
ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCEEEEE
QIKEAVDECGINLAKATPEDIEKMCEVLLRVSKPMIIAANKADLASDENIEALKVLGAVP
HHHHHHHHHCCEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHCCC
TIAAGELALKSAAHAKILRYLPGDSSFAPIEGAKLSAPQVKALTMIAEHMKKFGSTGVQE
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHH
ILNKIVFEDIGMIVVYPVEDDNKYCNAKGQVLPDAFLMPIGSNPKDMAFRVHTDIGNGFL
HHHHHHHHCCCEEEEEEECCCCCEECCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCEE
YAVDARTKMRIKDTTELKSGDIIKIVSTAK
EEEECCEEEEECCCCCCCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]