Definition | Methylibium petroleiphilum PM1 chromosome, complete genome. |
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Accession | NC_008825 |
Length | 4,044,195 |
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The map label for this gene is 124265787
Identifier: 124265787
GI number: 124265787
Start: 624378
End: 626093
Strand: Direct
Name: 124265787
Synonym: Mpe_A0594
Alternate gene names: NA
Gene position: 624378-626093 (Clockwise)
Preceding gene: 124265786
Following gene: 124265788
Centisome position: 15.44
GC content: 71.74
Gene sequence:
>1716_bases ATGATCCGTTACCGCCTCGAGGTGGCCGACGCCCTGGCCCACCAGTTCCGCGTCACCCTCACCATTGCGCAGCCGGCCGA AGAGCAGGCGCTGAGCCTGCCGGTGTGGATTCCCGGCAGCTACCTGGTGCGGGAGTTCGCCCGCCACCTGTCCCAGCTCG AGGCGCGCCAGGGCGATCGCAGCGTGCCCCTGATCCAGAGCGACAAGGCCGGCTGGGTAGCGCACTGCCGCGGCCGTGGC GCGCTGGTGGTGAGCTACGTGGTCTACGCCTTCGACACCTCGGTGCGCGCGGCCTACCTCGATGCCCGGCGCGGCTTCTT CAACGGCACCGGCGTGTTCCTGCACGTGCACGGCCGCGAGCACGAGCCGCACCGGCTGCGGATCGCCGGGCTGCCCAGGG GCTGGCAGGTCGCGACAGCGCTGCCGCTCGCCGGTGCCGACCACGAGGCGGCCGACTACGACGAACTGGTCGACCACCCG GTGGAGCTGGGCCGCTTCTGGCGCGGCAGCTTCAAGGCGGCGGGGGTGCCGCACGAGTTCATCGTGGCTGGAGCGCTGCC CAGCTTCGACGGCGAGCGCCTGCTGGCCGACACCCGGCGCATCTGCGAGGCGCAGATCGCCTTCTGGCACGGCGGCAAGA AGCCGCCGTTCAAGCGCTACGTCTTCCTGCTCAATGCGGTGGACGACGGCTACGGCGGCCTGGAGCACCGCGCCAGCACC GCGCTGATCGCCAACCGCCGCGACCTGCCGCGCAGCGGCATGAAGTCGGCGGGCGATGGCTACGTGACGTTGCTGGGCCT GATCAGCCACGAGTACTTCCACACCTGGAACGTCAAGCGGATGCGGCCGCGCGACTTCGAGCGCTACGACTACACGCGCG AGAACTACACCGAGCTGCTGTGGTTCTTCGAGGGCTTCACGTCCTACTACGACGACTTGGTGCTGCGGCGTACCGGCCTG ATCGACGAGGCACGCTACCTCAAGCTGCTGGCCAAGACCGTCAACAACGTGCGCGGCACGCCGGGGCGCACGGTGCAGAG CGTGGCCGAGGCCAGCTTCGACGCCTGGGTCAAGTACTACCGGCCCGACGAGAACACCGTCAACGCCACGGTCAGCTACT ACACCAAGGGCTCGCTGGTCGCGCTGGCGCTCGACCTGACGCTGCGCAGCGAGGGCGCCGGCACGCTCGACGACGTGATG CGCGGCCTGTGGGTGCGCAGCGGCGGTGGGCCGATCACCGAGACCGACATCGCCGCGGTGCTGGCCGAGGTCGGTGGCCG CTCTCTGGCGAGCGAATTGACCGCCTGGGTGCACGGCACCGGCGAACTGCCGCTGCAGCCGCTGCTGGCGAAGTTCGGCG TGGCCTGGAGCGAAGAGCTGCCCGTGCTGGCGCAGCGGCTCGGCGCGCGGCTCAGCGACAGCGGCGGCCTGCTGAAACTG CAGTCGGTCCTGCGCGGCGGCGCGGCCGAGCGCGCCGGGCTGGCGGCCGGCGACGAGCTGGTGGCACTCGACGGCTGGCG CCTCAAGCGCATCGACGACCTGAGTGCCCTGCAGGCCTGCGAGCGCCCGATGCCGCTGCTGGCGGCACGCGACCAGCGTC TGCTGGCTCTGACGCTGCCGGCGGCGCAGGCCGGCGGCGCGGTGACGCTGGTCGCGGCAGCGCAGGCCGACGCCGGAGAC CGTGCGCGCCGCCACGCCTGGCTCGGCGGCGCCTGA
Upstream 100 bases:
>100_bases CGCTTCCGGCTCAGCGCGGTCGCCAGCCTCAGCTGCTTCATCGCCGCGGCCGGCAGCTGATGCCCGCCGCCTCCCATTGC CTTCCGGAACCGAGTTCTCG
Downstream 100 bases:
>100_bases CCGTCCGGCCGTGAGCACCAGCTCGCAGCCTGCGCGCCGGCCGGTGCGGCGCGGCGTCTTTGCGCTGCTGGCCGGCCTCA GCCTGCTGCTGCACCTGTGG
Product: peptidase
Products: NA
Alternate protein names: Peptidase M; Protease; M61 Family Peptidase; Glycyl Aminopeptidase; M61 Glycyl Aminopeptidase; M61 Family Glycyl Aminopeptidase; Pdz/Dhr/Glgf; Trypsin-Like Serine Protease; Aminopeptidase N Family Protein; Metallopeptidase; Glycyl Aminopeptidase Protein; PDZ Domain-Containing Protein; PDZ Domain Family Protein; Protease With C-Terminal PDZ Domain-Containing Protein; PDZ/DHR/GLGFPeptidase M; PDZ Domain Protein; Protease With C-Terminal PDZ Domain; Aminopeptidase; Signaling Protein; M61 Glycyl Aminopeptidase Protein; M61 Glycyl Aminopeptidase Family Protein
Number of amino acids: Translated: 571; Mature: 571
Protein sequence:
>571_residues MIRYRLEVADALAHQFRVTLTIAQPAEEQALSLPVWIPGSYLVREFARHLSQLEARQGDRSVPLIQSDKAGWVAHCRGRG ALVVSYVVYAFDTSVRAAYLDARRGFFNGTGVFLHVHGREHEPHRLRIAGLPRGWQVATALPLAGADHEAADYDELVDHP VELGRFWRGSFKAAGVPHEFIVAGALPSFDGERLLADTRRICEAQIAFWHGGKKPPFKRYVFLLNAVDDGYGGLEHRAST ALIANRRDLPRSGMKSAGDGYVTLLGLISHEYFHTWNVKRMRPRDFERYDYTRENYTELLWFFEGFTSYYDDLVLRRTGL IDEARYLKLLAKTVNNVRGTPGRTVQSVAEASFDAWVKYYRPDENTVNATVSYYTKGSLVALALDLTLRSEGAGTLDDVM RGLWVRSGGGPITETDIAAVLAEVGGRSLASELTAWVHGTGELPLQPLLAKFGVAWSEELPVLAQRLGARLSDSGGLLKL QSVLRGGAAERAGLAAGDELVALDGWRLKRIDDLSALQACERPMPLLAARDQRLLALTLPAAQAGGAVTLVAAAQADAGD RARRHAWLGGA
Sequences:
>Translated_571_residues MIRYRLEVADALAHQFRVTLTIAQPAEEQALSLPVWIPGSYLVREFARHLSQLEARQGDRSVPLIQSDKAGWVAHCRGRG ALVVSYVVYAFDTSVRAAYLDARRGFFNGTGVFLHVHGREHEPHRLRIAGLPRGWQVATALPLAGADHEAADYDELVDHP VELGRFWRGSFKAAGVPHEFIVAGALPSFDGERLLADTRRICEAQIAFWHGGKKPPFKRYVFLLNAVDDGYGGLEHRAST ALIANRRDLPRSGMKSAGDGYVTLLGLISHEYFHTWNVKRMRPRDFERYDYTRENYTELLWFFEGFTSYYDDLVLRRTGL IDEARYLKLLAKTVNNVRGTPGRTVQSVAEASFDAWVKYYRPDENTVNATVSYYTKGSLVALALDLTLRSEGAGTLDDVM RGLWVRSGGGPITETDIAAVLAEVGGRSLASELTAWVHGTGELPLQPLLAKFGVAWSEELPVLAQRLGARLSDSGGLLKL QSVLRGGAAERAGLAAGDELVALDGWRLKRIDDLSALQACERPMPLLAARDQRLLALTLPAAQAGGAVTLVAAAQADAGD RARRHAWLGGA >Mature_571_residues MIRYRLEVADALAHQFRVTLTIAQPAEEQALSLPVWIPGSYLVREFARHLSQLEARQGDRSVPLIQSDKAGWVAHCRGRG ALVVSYVVYAFDTSVRAAYLDARRGFFNGTGVFLHVHGREHEPHRLRIAGLPRGWQVATALPLAGADHEAADYDELVDHP VELGRFWRGSFKAAGVPHEFIVAGALPSFDGERLLADTRRICEAQIAFWHGGKKPPFKRYVFLLNAVDDGYGGLEHRAST ALIANRRDLPRSGMKSAGDGYVTLLGLISHEYFHTWNVKRMRPRDFERYDYTRENYTELLWFFEGFTSYYDDLVLRRTGL IDEARYLKLLAKTVNNVRGTPGRTVQSVAEASFDAWVKYYRPDENTVNATVSYYTKGSLVALALDLTLRSEGAGTLDDVM RGLWVRSGGGPITETDIAAVLAEVGGRSLASELTAWVHGTGELPLQPLLAKFGVAWSEELPVLAQRLGARLSDSGGLLKL QSVLRGGAAERAGLAAGDELVALDGWRLKRIDDLSALQACERPMPLLAARDQRLLALTLPAAQAGGAVTLVAAAQADAGD RARRHAWLGGA
Specific function: Unknown
COG id: COG3975
COG function: function code R; Predicted protease with the C-terminal PDZ domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 62792; Mature: 62792
Theoretical pI: Translated: 8.12; Mature: 8.12
Prosite motif: PS50106 PDZ ; PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIRYRLEVADALAHQFRVTLTIAQPAEEQALSLPVWIPGSYLVREFARHLSQLEARQGDR CEEEEHHHHHHHHHCEEEEEEEECCCCHHHCCCEEECCHHHHHHHHHHHHHHHHHHCCCC SVPLIQSDKAGWVAHCRGRGALVVSYVVYAFDTSVRAAYLDARRGFFNGTGVFLHVHGRE CCCEEECCCCCCEEEECCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCEEEEEEECCC HEPHRLRIAGLPRGWQVATALPLAGADHEAADYDELVDHPVELGRFWRGSFKAAGVPHEF CCCCEEEEECCCCCCCCEEECCCCCCCCCCCCHHHHHCCHHHHHHHHCCCCCCCCCCHHH IVAGALPSFDGERLLADTRRICEAQIAFWHGGKKPPFKRYVFLLNAVDDGYGGLEHRAST EEEECCCCCCCCHHHHHHHHHHHHHHHEECCCCCCCHHHEEEEEECCCCCCCCHHHHHHH ALIANRRDLPRSGMKSAGDGYVTLLGLISHEYFHTWNVKRMRPRDFERYDYTRENYTELL HHEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHEECCCCCCCCCCCHHHCCCHHHHHHHH WFFEGFTSYYDDLVLRRTGLIDEARYLKLLAKTVNNVRGTPGRTVQSVAEASFDAWVKYY HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHEE RPDENTVNATVSYYTKGSLVALALDLTLRSEGAGTLDDVMRGLWVRSGGGPITETDIAAV CCCCCCEEEEEEEEECCCEEEEEEEEEEECCCCCCHHHHHHHHEEECCCCCCCHHHHHHH LAEVGGRSLASELTAWVHGTGELPLQPLLAKFGVAWSEELPVLAQRLGARLSDSGGLLKL HHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCEEHH QSVLRGGAAERAGLAAGDELVALDGWRLKRIDDLSALQACERPMPLLAARDQRLLALTLP HHHHCCCCCHHCCCCCCCCEEEECCCEECCHHHHHHHHHHCCCCCHHHCCCCEEEEEEEC AAQAGGAVTLVAAAQADAGDRARRHAWLGGA CCCCCCEEEEEEECCCCCCHHHHHCCCCCCC >Mature Secondary Structure MIRYRLEVADALAHQFRVTLTIAQPAEEQALSLPVWIPGSYLVREFARHLSQLEARQGDR CEEEEHHHHHHHHHCEEEEEEEECCCCHHHCCCEEECCHHHHHHHHHHHHHHHHHHCCCC SVPLIQSDKAGWVAHCRGRGALVVSYVVYAFDTSVRAAYLDARRGFFNGTGVFLHVHGRE CCCEEECCCCCCEEEECCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCEEEEEEECCC HEPHRLRIAGLPRGWQVATALPLAGADHEAADYDELVDHPVELGRFWRGSFKAAGVPHEF CCCCEEEEECCCCCCCCEEECCCCCCCCCCCCHHHHHCCHHHHHHHHCCCCCCCCCCHHH IVAGALPSFDGERLLADTRRICEAQIAFWHGGKKPPFKRYVFLLNAVDDGYGGLEHRAST EEEECCCCCCCCHHHHHHHHHHHHHHHEECCCCCCCHHHEEEEEECCCCCCCCHHHHHHH ALIANRRDLPRSGMKSAGDGYVTLLGLISHEYFHTWNVKRMRPRDFERYDYTRENYTELL HHEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHEECCCCCCCCCCCHHHCCCHHHHHHHH WFFEGFTSYYDDLVLRRTGLIDEARYLKLLAKTVNNVRGTPGRTVQSVAEASFDAWVKYY HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHEE RPDENTVNATVSYYTKGSLVALALDLTLRSEGAGTLDDVMRGLWVRSGGGPITETDIAAV CCCCCCEEEEEEEEECCCEEEEEEEEEEECCCCCCHHHHHHHHEEECCCCCCCHHHHHHH LAEVGGRSLASELTAWVHGTGELPLQPLLAKFGVAWSEELPVLAQRLGARLSDSGGLLKL HHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCEEHH QSVLRGGAAERAGLAAGDELVALDGWRLKRIDDLSALQACERPMPLLAARDQRLLALTLP HHHHCCCCCHHCCCCCCCCEEEECCCEECCHHHHHHHHHHCCCCCHHHCCCCEEEEEEEC AAQAGGAVTLVAAAQADAGDRARRHAWLGGA CCCCCCEEEEEEECCCCCCHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA