Definition | Methylibium petroleiphilum PM1 chromosome, complete genome. |
---|---|
Accession | NC_008825 |
Length | 4,044,195 |
Click here to switch to the map view.
The map label for this gene is penA [H]
Identifier: 124265649
GI number: 124265649
Start: 493221
End: 495044
Strand: Direct
Name: penA [H]
Synonym: Mpe_A0456
Alternate gene names: 124265649
Gene position: 493221-495044 (Clockwise)
Preceding gene: 124265648
Following gene: 124265650
Centisome position: 12.2
GC content: 70.34
Gene sequence:
>1824_bases ATGAGCGCCTGGCGCGAATGGCTGGGCCGCCTCGGCCGGGGCGGTTCCCGCCGGCCCGGTGCACGCGCCGCCAGCGGTGC CGTGAGCGCGCGCAGCGTGCGCTACGCGAGCAGCCCGCTGCTGGCGTCGAAGACGCCGCCGTGGCGCTCCAAGTTCCTGG TCGCTCTGGTCGGTGCCGGCTTCCTGCTGCTGCTCGGCCGCGCGGTCTACGTGCAGGTGATCGGCACCGAGTTCTACCAG CAGCAGGGCGCGAGCCGCTACGCGCACAAGCTCGAGCTGCCGGCCAACCGCGGCCGCATCACCGACCGCGGTGGCGAACT GCTCGCCTCCAGCGTGGAGGCACCGACGCTGTGGGCCATCCCGCGCGACGTCACCGCCACCTCTGCCGAGAAGCGCCAGC TCGCCAGGCTGCTCGGCATGTCGGTCGGCGATCTGGAGAAGCGTCTGGCGGACAACCCGAACTTCGTCTACCTGCGCCGT CAGGTCGACGACTCGGTGGCGCTGCAGGTGCGCGCACTCAACCTCAAGGGCGTGCACCAGCTCACCGAGTACAAGCGGCG CTACCCGGCGGGCGAGGCGGCGGCCCACGTGGTGGGCTTCACCAACGTCGAGGACCGGGGGCAGGAGGGCATCGAACTCG CCTTCCAGTCCGACCTGGCCGGCCGCGACGGCAGTCGCCGCGTCATCAAGGACCGTCGCGGCCGCGTGGTCGAGGACATC GGCGAGCGCGTGCCACCGGTCGACGGTCGCGACATCGAGCTCGCGATCGACACCAAGGTGCAGTTCTTCGCCTACCAGCG CATCCGTGACGCGGTGGCCGAGCACAAGGCCAAGGCCGGCAGCGTGGTGGTGCTCGACGTGCAGAGCGGCGAGGTGCTGG CGCTGGCCAACTACCCGAGCTACACGCCGGGTGACCGCCGCAACCTCAGCGGAGCGCAGCTGCGCAACCGGGCGCTGACC GATACCTTCGAGCCCGGCTCGACCATGAAGCCCTTCATCATCGGCGAGGCACTGCAGGCCGGACGCGTGTCGCCCTCGAC GGTGATCGACACCGCACCCGGCCGCATGAGCGTCACCGGCAGCACCATCAGCGACGCCCACCCGCACGGCGCGCTCACCG TCGAGCAGGTGATCCAGAAATCGAGCAACGTCGGCACCGTGAAGATCTCCCAGCTGCTCTCCGAGCGGGAGATGTGGGAG ACCTTCAGCGCCATCGGCCTGGGCCAGAAGCCGCAGATCGACTTCCCCGGCGCCGTCACCGGCCGGCTGCGTCCCTACAA GACCTGGCGGCCGATCGAGAAGGCGACCATGAGCTACGGCTACGGCCTGTCGGCCAGCCTGTTCCAGCTCGCGCGCGCCT ACACCGTGTTCGCGCGCGACGGGGAGCTCATCCCGGTCAGCATCACCCGCGCGCAGCAGCCCGGCGCCGGCGTGCGCGTG TTCTCGCCCGAGGTCGCGCGCGATGTGCGCCACATGCTGCAGATGGCGGCGGGCCCCGGCGGCACCGGCCCGAAGGCGCA GACCATCGGCTACTCGGTCGGCGGCAAGTCAGGCACCGCGCACAAGCAGGAAGGCAAGGGCTACGCCGACAAGAAGTACC GCGCCTGGTTCGTCGGCCTGGCGCCGATCGACAAGCCGCGCATCGTGGTCGCGGTGATGGTCGACGAGCCGAACGCCGGC AAGTACTTCGGCGGCGAGGTCGCCGCACCGGTGTTCAGCGAGGTGGTGCAGAAGACGCTGCATGCGATGGGTGTTTCGCC CGATCTCGACGTCAAGCCGCAGATCGTGGCGCGCCACGAGGACGCTGTGGAGGAGAGCTTCTGA
Upstream 100 bases:
>100_bases GCGAGCGACTCGGCATGCGCAGCGCCACACCGGCGGTCACCGAGTACGTGGTGGTGCCGGTGGCCGCTGCGCCGGCGCCT GATGTCGCGGAGCTGCGCCG
Downstream 100 bases:
>100_bases TGCTCACCGCGTTGCGTTCGCCCGCCGCCGCGGCCCGCTGGCTCCAGGAATGGACCACCGGCACGCTGCGCACCGACAGC CGCCTGGTGCAGCGCGGCGA
Product: peptidoglycan synthetase FtsI
Products: NA
Alternate protein names: PBP-2 [H]
Number of amino acids: Translated: 607; Mature: 606
Protein sequence:
>607_residues MSAWREWLGRLGRGGSRRPGARAASGAVSARSVRYASSPLLASKTPPWRSKFLVALVGAGFLLLLGRAVYVQVIGTEFYQ QQGASRYAHKLELPANRGRITDRGGELLASSVEAPTLWAIPRDVTATSAEKRQLARLLGMSVGDLEKRLADNPNFVYLRR QVDDSVALQVRALNLKGVHQLTEYKRRYPAGEAAAHVVGFTNVEDRGQEGIELAFQSDLAGRDGSRRVIKDRRGRVVEDI GERVPPVDGRDIELAIDTKVQFFAYQRIRDAVAEHKAKAGSVVVLDVQSGEVLALANYPSYTPGDRRNLSGAQLRNRALT DTFEPGSTMKPFIIGEALQAGRVSPSTVIDTAPGRMSVTGSTISDAHPHGALTVEQVIQKSSNVGTVKISQLLSEREMWE TFSAIGLGQKPQIDFPGAVTGRLRPYKTWRPIEKATMSYGYGLSASLFQLARAYTVFARDGELIPVSITRAQQPGAGVRV FSPEVARDVRHMLQMAAGPGGTGPKAQTIGYSVGGKSGTAHKQEGKGYADKKYRAWFVGLAPIDKPRIVVAVMVDEPNAG KYFGGEVAAPVFSEVVQKTLHAMGVSPDLDVKPQIVARHEDAVEESF
Sequences:
>Translated_607_residues MSAWREWLGRLGRGGSRRPGARAASGAVSARSVRYASSPLLASKTPPWRSKFLVALVGAGFLLLLGRAVYVQVIGTEFYQ QQGASRYAHKLELPANRGRITDRGGELLASSVEAPTLWAIPRDVTATSAEKRQLARLLGMSVGDLEKRLADNPNFVYLRR QVDDSVALQVRALNLKGVHQLTEYKRRYPAGEAAAHVVGFTNVEDRGQEGIELAFQSDLAGRDGSRRVIKDRRGRVVEDI GERVPPVDGRDIELAIDTKVQFFAYQRIRDAVAEHKAKAGSVVVLDVQSGEVLALANYPSYTPGDRRNLSGAQLRNRALT DTFEPGSTMKPFIIGEALQAGRVSPSTVIDTAPGRMSVTGSTISDAHPHGALTVEQVIQKSSNVGTVKISQLLSEREMWE TFSAIGLGQKPQIDFPGAVTGRLRPYKTWRPIEKATMSYGYGLSASLFQLARAYTVFARDGELIPVSITRAQQPGAGVRV FSPEVARDVRHMLQMAAGPGGTGPKAQTIGYSVGGKSGTAHKQEGKGYADKKYRAWFVGLAPIDKPRIVVAVMVDEPNAG KYFGGEVAAPVFSEVVQKTLHAMGVSPDLDVKPQIVARHEDAVEESF >Mature_606_residues SAWREWLGRLGRGGSRRPGARAASGAVSARSVRYASSPLLASKTPPWRSKFLVALVGAGFLLLLGRAVYVQVIGTEFYQQ QGASRYAHKLELPANRGRITDRGGELLASSVEAPTLWAIPRDVTATSAEKRQLARLLGMSVGDLEKRLADNPNFVYLRRQ VDDSVALQVRALNLKGVHQLTEYKRRYPAGEAAAHVVGFTNVEDRGQEGIELAFQSDLAGRDGSRRVIKDRRGRVVEDIG ERVPPVDGRDIELAIDTKVQFFAYQRIRDAVAEHKAKAGSVVVLDVQSGEVLALANYPSYTPGDRRNLSGAQLRNRALTD TFEPGSTMKPFIIGEALQAGRVSPSTVIDTAPGRMSVTGSTISDAHPHGALTVEQVIQKSSNVGTVKISQLLSEREMWET FSAIGLGQKPQIDFPGAVTGRLRPYKTWRPIEKATMSYGYGLSASLFQLARAYTVFARDGELIPVSITRAQQPGAGVRVF SPEVARDVRHMLQMAAGPGGTGPKAQTIGYSVGGKSGTAHKQEGKGYADKKYRAWFVGLAPIDKPRIVVAVMVDEPNAGK YFGGEVAAPVFSEVVQKTLHAMGVSPDLDVKPQIVARHEDAVEESF
Specific function: Synthesis of cross-linked peptidoglycan from the lipid intermediates [H]
COG id: COG0768
COG function: function code M; Cell division protein FtsI/penicillin-binding protein 2
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transpeptidase family [H]
Homologues:
Organism=Escherichia coli, GI1786272, Length=548, Percent_Identity=39.2335766423358, Blast_Score=390, Evalue=1e-109, Organism=Escherichia coli, GI1786854, Length=595, Percent_Identity=25.3781512605042, Blast_Score=116, Evalue=5e-27,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR005311 - InterPro: IPR001460 [H]
Pfam domain/function: PF03717 PBP_dimer; PF00905 Transpeptidase [H]
EC number: NA
Molecular weight: Translated: 65810; Mature: 65679
Theoretical pI: Translated: 10.26; Mature: 10.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAWREWLGRLGRGGSRRPGARAASGAVSARSVRYASSPLLASKTPPWRSKFLVALVGAG CCHHHHHHHHHCCCCCCCCCCCHHCCCCHHHHEEECCCCCCCCCCCCHHHHHHHHHHHHH FLLLLGRAVYVQVIGTEFYQQQGASRYAHKLELPANRGRITDRGGELLASSVEAPTLWAI HHHHHHHHHHHHHHHHHHHHHCCHHHHHHEECCCCCCCCCCCCCHHHHHHCCCCCEEEEC PRDVTATSAEKRQLARLLGMSVGDLEKRLADNPNFVYLRRQVDDSVALQVRALNLKGVHQ CCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEEECCCCEEEEEEEECCCHHHH LTEYKRRYPAGEAAAHVVGFTNVEDRGQEGIELAFQSDLAGRDGSRRVIKDRRGRVVEDI HHHHHHHCCCCCHHEEEEEECCCHHCCCCCEEEEEECCCCCCCCCHHHHHHHCCCHHHHH GERVPPVDGRDIELAIDTKVQFFAYQRIRDAVAEHKAKAGSVVVLDVQSGEVLALANYPS HHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEECCCC YTPGDRRNLSGAQLRNRALTDTFEPGSTMKPFIIGEALQAGRVSPSTVIDTAPGRMSVTG CCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCEEHHHHHCCCCCCCCEEECCCCCEEECC STISDAHPHGALTVEQVIQKSSNVGTVKISQLLSEREMWETFSAIGLGQKPQIDFPGAVT CCCCCCCCCCCEEHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC GRLRPYKTWRPIEKATMSYGYGLSASLFQLARAYTVFARDGELIPVSITRAQQPGAGVRV CCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHEEEECCCCEEEEEEEECCCCCCCEEE FSPEVARDVRHMLQMAAGPGGTGPKAQTIGYSVGGKSGTAHKQEGKGYADKKYRAWFVGL ECHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCHHCCCCCCCCCEEEEEEEE APIDKPRIVVAVMVDEPNAGKYFGGEVAAPVFSEVVQKTLHAMGVSPDLDVKPQIVARHE CCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHEECCH DAVEESF HHHHCCC >Mature Secondary Structure SAWREWLGRLGRGGSRRPGARAASGAVSARSVRYASSPLLASKTPPWRSKFLVALVGAG CHHHHHHHHHCCCCCCCCCCCHHCCCCHHHHEEECCCCCCCCCCCCHHHHHHHHHHHHH FLLLLGRAVYVQVIGTEFYQQQGASRYAHKLELPANRGRITDRGGELLASSVEAPTLWAI HHHHHHHHHHHHHHHHHHHHHCCHHHHHHEECCCCCCCCCCCCCHHHHHHCCCCCEEEEC PRDVTATSAEKRQLARLLGMSVGDLEKRLADNPNFVYLRRQVDDSVALQVRALNLKGVHQ CCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEEECCCCEEEEEEEECCCHHHH LTEYKRRYPAGEAAAHVVGFTNVEDRGQEGIELAFQSDLAGRDGSRRVIKDRRGRVVEDI HHHHHHHCCCCCHHEEEEEECCCHHCCCCCEEEEEECCCCCCCCCHHHHHHHCCCHHHHH GERVPPVDGRDIELAIDTKVQFFAYQRIRDAVAEHKAKAGSVVVLDVQSGEVLALANYPS HHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEECCCC YTPGDRRNLSGAQLRNRALTDTFEPGSTMKPFIIGEALQAGRVSPSTVIDTAPGRMSVTG CCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCEEHHHHHCCCCCCCCEEECCCCCEEECC STISDAHPHGALTVEQVIQKSSNVGTVKISQLLSEREMWETFSAIGLGQKPQIDFPGAVT CCCCCCCCCCCEEHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC GRLRPYKTWRPIEKATMSYGYGLSASLFQLARAYTVFARDGELIPVSITRAQQPGAGVRV CCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHEEEECCCCEEEEEEEECCCCCCCEEE FSPEVARDVRHMLQMAAGPGGTGPKAQTIGYSVGGKSGTAHKQEGKGYADKKYRAWFVGL ECHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCHHCCCCCCCCCEEEEEEEE APIDKPRIVVAVMVDEPNAGKYFGGEVAAPVFSEVVQKTLHAMGVSPDLDVKPQIVARHE CCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHEECCH DAVEESF HHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 3126399 [H]